EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000015076 (Gene tree)
Gene ID: 102230323
Gene Symbol: polr1c
Alias: zgc:65973
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 7625 bases
Position: chr22:28791315-28798939
Accession: 102230323
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000015114	RNA_pol_A_bac	PF01000.26	3.6e-32	1	1
ENSXMAP00000015114	RNA_pol_L	PF01193.24	3.8e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000015134	-	2005	XM_023327065	ENSXMAP00000015114	351 (aa)	XP_023182833	M4AKX0

Gene Model

Click here to download ENSXMAG00000015076's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03020	RNA polymerase	KEGG
xma04623	Cytosolic DNA-sensing pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000015076's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000015076	polr1c	100	72.934	ENSG00000171453	POLR1C	100	73.718	Homo_sapiens
ENSXMAG00000015076	polr1c	100	86.610	ENSAPOG00000024356	polr1c	100	86.610	Acanthochromis_polyacanthus
ENSXMAG00000015076	polr1c	99	73.066	ENSAMEG00000012205	POLR1C	99	72.779	Ailuropoda_melanoleuca
ENSXMAG00000015076	polr1c	94	77.946	ENSACIG00000016268	polr1c	91	77.946	Amphilophus_citrinellus
ENSXMAG00000015076	polr1c	100	86.040	ENSAOCG00000011687	polr1c	97	86.040	Amphiprion_ocellaris
ENSXMAG00000015076	polr1c	100	86.895	ENSAPEG00000002433	polr1c	100	86.895	Amphiprion_percula
ENSXMAG00000015076	polr1c	99	90.258	ENSATEG00000005985	polr1c	99	90.258	Anabas_testudineus
ENSXMAG00000015076	polr1c	87	71.711	ENSAPLG00000002908	POLR1C	100	71.382	Anas_platyrhynchos
ENSXMAG00000015076	polr1c	90	74.286	ENSACAG00000009764	POLR1C	89	73.968	Anolis_carolinensis
ENSXMAG00000015076	polr1c	100	73.219	ENSANAG00000025805	POLR1C	99	72.934	Aotus_nancymaae
ENSXMAG00000015076	polr1c	56	31.122	ENSACLG00000004854	polr2c	78	31.122	Astatotilapia_calliptera
ENSXMAG00000015076	polr1c	100	89.459	ENSACLG00000006573	polr1c	100	89.459	Astatotilapia_calliptera
ENSXMAG00000015076	polr1c	100	80.912	ENSAMXG00000012062	polr1c	99	80.627	Astyanax_mexicanus
ENSXMAG00000015076	polr1c	100	73.219	ENSBTAG00000018969	POLR1C	100	73.219	Bos_taurus
ENSXMAG00000015076	polr1c	56	30.918	WBGene00007971	rpb-3	67	30.918	Caenorhabditis_elegans
ENSXMAG00000015076	polr1c	92	46.154	WBGene00019275	rpac-40	92	46.154	Caenorhabditis_elegans
ENSXMAG00000015076	polr1c	100	72.365	ENSCJAG00000005594	POLR1C	100	72.080	Callithrix_jacchus
ENSXMAG00000015076	polr1c	100	72.650	ENSCAFG00000001872	POLR1C	100	72.365	Canis_familiaris
ENSXMAG00000015076	polr1c	100	72.650	ENSCAFG00020012018	POLR1C	100	72.365	Canis_lupus_dingo
ENSXMAG00000015076	polr1c	60	31.336	ENSCAFG00020007660	POLR2C	60	31.336	Canis_lupus_dingo
ENSXMAG00000015076	polr1c	100	72.650	ENSCHIG00000004352	POLR1C	100	72.365	Capra_hircus
ENSXMAG00000015076	polr1c	100	73.219	ENSTSYG00000011921	POLR1C	100	72.934	Carlito_syrichta
ENSXMAG00000015076	polr1c	86	74.587	ENSCAPG00000015364	POLR1C	88	74.257	Cavia_aperea
ENSXMAG00000015076	polr1c	100	74.074	ENSCPOG00000038098	POLR1C	100	73.789	Cavia_porcellus
ENSXMAG00000015076	polr1c	100	72.934	ENSCCAG00000020169	POLR1C	100	72.650	Cebus_capucinus
ENSXMAG00000015076	polr1c	100	72.650	ENSCATG00000044045	POLR1C	100	72.650	Cercocebus_atys
ENSXMAG00000015076	polr1c	60	31.336	ENSCLAG00000013676	POLR2C	52	31.336	Chinchilla_lanigera
ENSXMAG00000015076	polr1c	100	74.359	ENSCLAG00000009266	POLR1C	100	74.074	Chinchilla_lanigera
ENSXMAG00000015076	polr1c	100	71.795	ENSCSAG00000011913	POLR1C	100	71.795	Chlorocebus_sabaeus
ENSXMAG00000015076	polr1c	60	68.868	ENSCHOG00000006601	POLR1C	100	68.868	Choloepus_hoffmanni
ENSXMAG00000015076	polr1c	99	75.072	ENSCPBG00000025203	POLR1C	99	74.785	Chrysemys_picta_bellii
ENSXMAG00000015076	polr1c	97	54.678	ENSCING00000003563	-	97	54.678	Ciona_intestinalis
ENSXMAG00000015076	polr1c	58	30.698	ENSCSAVG00000002167	-	72	30.698	Ciona_savignyi
ENSXMAG00000015076	polr1c	100	72.650	ENSCANG00000043167	POLR1C	100	72.365	Colobus_angolensis_palliatus
ENSXMAG00000015076	polr1c	100	72.080	ENSCGRG00001017533	Polr1c	100	71.510	Cricetulus_griseus_chok1gshd
ENSXMAG00000015076	polr1c	86	72.277	ENSCGRG00000013225	Polr1c	100	71.617	Cricetulus_griseus_crigri
ENSXMAG00000015076	polr1c	100	84.046	ENSCSEG00000018097	polr1c	100	84.046	Cynoglossus_semilaevis
ENSXMAG00000015076	polr1c	60	93.396	ENSCVAG00000005684	polr1c	85	93.396	Cyprinodon_variegatus
ENSXMAG00000015076	polr1c	56	30.612	ENSCVAG00000017931	polr2c	74	30.612	Cyprinodon_variegatus
ENSXMAG00000015076	polr1c	100	79.772	ENSDARG00000039400	polr1c	96	79.487	Danio_rerio
ENSXMAG00000015076	polr1c	100	72.365	ENSDNOG00000042693	POLR1C	100	72.080	Dasypus_novemcinctus
ENSXMAG00000015076	polr1c	100	73.219	ENSDORG00000000429	Polr1c	100	72.934	Dipodomys_ordii
ENSXMAG00000015076	polr1c	90	52.050	FBgn0031657	CG3756	93	51.735	Drosophila_melanogaster
ENSXMAG00000015076	polr1c	99	68.857	ENSETEG00000010807	POLR1C	99	68.857	Echinops_telfairi
ENSXMAG00000015076	polr1c	97	67.353	ENSEBUG00000013725	polr1c	98	66.570	Eptatretus_burgeri
ENSXMAG00000015076	polr1c	100	72.934	ENSEASG00005003338	POLR1C	100	72.650	Equus_asinus_asinus
ENSXMAG00000015076	polr1c	100	72.934	ENSECAG00000023516	POLR1C	98	72.650	Equus_caballus
ENSXMAG00000015076	polr1c	99	73.639	ENSEEUG00000005471	POLR1C	99	73.352	Erinaceus_europaeus
ENSXMAG00000015076	polr1c	100	80.057	ENSELUG00000013027	polr1c	100	79.772	Esox_lucius
ENSXMAG00000015076	polr1c	100	72.934	ENSFCAG00000009735	POLR1C	100	72.650	Felis_catus
ENSXMAG00000015076	polr1c	93	71.865	ENSFALG00000012111	POLR1C	100	71.560	Ficedula_albicollis
ENSXMAG00000015076	polr1c	100	74.074	ENSFDAG00000008428	POLR1C	100	73.789	Fukomys_damarensis
ENSXMAG00000015076	polr1c	100	80.627	ENSFHEG00000000262	polr1c	100	81.197	Fundulus_heteroclitus
ENSXMAG00000015076	polr1c	93	80.183	ENSGMOG00000013878	polr1c	100	79.268	Gadus_morhua
ENSXMAG00000015076	polr1c	100	72.934	ENSGALG00000010349	POLR1C	100	72.650	Gallus_gallus
ENSXMAG00000015076	polr1c	100	98.006	ENSGAFG00000010153	polr1c	100	98.006	Gambusia_affinis
ENSXMAG00000015076	polr1c	100	84.330	ENSGACG00000002453	polr1c	100	84.330	Gasterosteus_aculeatus
ENSXMAG00000015076	polr1c	99	74.566	ENSGAGG00000010640	POLR1C	99	74.277	Gopherus_agassizii
ENSXMAG00000015076	polr1c	100	72.934	ENSGGOG00000010903	POLR1C	100	72.650	Gorilla_gorilla
ENSXMAG00000015076	polr1c	100	79.487	ENSHBUG00000017816	polr1c	100	79.487	Haplochromis_burtoni
ENSXMAG00000015076	polr1c	56	31.122	ENSHBUG00000023040	polr2c	78	31.122	Haplochromis_burtoni
ENSXMAG00000015076	polr1c	100	73.219	ENSHGLG00000019441	POLR1C	100	72.934	Heterocephalus_glaber_female
ENSXMAG00000015076	polr1c	100	73.504	ENSHGLG00100005970	POLR1C	100	73.219	Heterocephalus_glaber_male
ENSXMAG00000015076	polr1c	99	80.802	ENSHCOG00000002179	polr1c	99	80.802	Hippocampus_comes
ENSXMAG00000015076	polr1c	99	80.802	ENSIPUG00000024464	polr1c	99	80.516	Ictalurus_punctatus
ENSXMAG00000015076	polr1c	60	31.336	ENSSTOG00000015150	-	50	31.336	Ictidomys_tridecemlineatus
ENSXMAG00000015076	polr1c	100	73.219	ENSSTOG00000010631	POLR1C	100	72.934	Ictidomys_tridecemlineatus
ENSXMAG00000015076	polr1c	100	73.219	ENSJJAG00000023110	Polr1c	100	72.934	Jaculus_jaculus
ENSXMAG00000015076	polr1c	100	91.453	ENSKMAG00000014305	polr1c	97	91.453	Kryptolebias_marmoratus
ENSXMAG00000015076	polr1c	100	87.749	ENSLBEG00000014925	polr1c	100	87.749	Labrus_bergylta
ENSXMAG00000015076	polr1c	95	59.524	ENSLACG00000012567	POLR1C	98	59.226	Latimeria_chalumnae
ENSXMAG00000015076	polr1c	100	78.348	ENSLOCG00000016710	polr1c	96	78.063	Lepisosteus_oculatus
ENSXMAG00000015076	polr1c	87	73.115	ENSLAFG00000026248	POLR1C	100	72.787	Loxodonta_africana
ENSXMAG00000015076	polr1c	64	31.140	ENSLAFG00000027230	POLR2C	78	31.140	Loxodonta_africana
ENSXMAG00000015076	polr1c	100	72.365	ENSMFAG00000046295	POLR1C	100	72.365	Macaca_fascicularis
ENSXMAG00000015076	polr1c	100	72.365	ENSMMUG00000015192	POLR1C	100	72.365	Macaca_mulatta
ENSXMAG00000015076	polr1c	100	72.365	ENSMNEG00000028073	POLR1C	100	72.365	Macaca_nemestrina
ENSXMAG00000015076	polr1c	100	72.365	ENSMLEG00000034818	POLR1C	100	72.365	Mandrillus_leucophaeus
ENSXMAG00000015076	polr1c	100	88.604	ENSMAMG00000008700	polr1c	100	88.604	Mastacembelus_armatus
ENSXMAG00000015076	polr1c	100	89.174	ENSMZEG00005018545	polr1c	100	89.174	Maylandia_zebra
ENSXMAG00000015076	polr1c	84	68.814	ENSMGAG00000011020	POLR1C	100	68.475	Meleagris_gallopavo
ENSXMAG00000015076	polr1c	100	72.080	ENSMAUG00000014329	Polr1c	100	71.510	Mesocricetus_auratus
ENSXMAG00000015076	polr1c	100	71.795	ENSMICG00000005027	POLR1C	99	72.524	Microcebus_murinus
ENSXMAG00000015076	polr1c	60	31.628	ENSMOCG00000013652	Polr2c	73	31.628	Microtus_ochrogaster
ENSXMAG00000015076	polr1c	100	72.650	ENSMOCG00000017549	Polr1c	100	72.080	Microtus_ochrogaster
ENSXMAG00000015076	polr1c	100	69.516	ENSMMOG00000005380	polr1c	100	70.085	Mola_mola
ENSXMAG00000015076	polr1c	84	73.220	ENSMODG00000018964	POLR1C	100	73.220	Monodelphis_domestica
ENSXMAG00000015076	polr1c	100	74.074	ENSMALG00000011711	polr1c	100	74.644	Monopterus_albus
ENSXMAG00000015076	polr1c	100	63.818	MGP_CAROLIEiJ_G0021662	Polr1c	100	70.076	Mus_caroli
ENSXMAG00000015076	polr1c	100	72.365	ENSMUSG00000067148	Polr1c	99	75.728	Mus_musculus
ENSXMAG00000015076	polr1c	100	72.934	MGP_PahariEiJ_G0020654	Polr1c	99	76.699	Mus_pahari
ENSXMAG00000015076	polr1c	100	72.365	MGP_SPRETEiJ_G0022574	Polr1c	99	75.728	Mus_spretus
ENSXMAG00000015076	polr1c	100	72.934	ENSMPUG00000012916	POLR1C	91	72.650	Mustela_putorius_furo
ENSXMAG00000015076	polr1c	100	73.219	ENSMLUG00000017751	POLR1C	99	72.934	Myotis_lucifugus
ENSXMAG00000015076	polr1c	100	72.934	ENSNGAG00000023487	Polr1c	100	72.650	Nannospalax_galili
ENSXMAG00000015076	polr1c	100	89.174	ENSNBRG00000018742	polr1c	100	89.174	Neolamprologus_brichardi
ENSXMAG00000015076	polr1c	100	72.650	ENSNLEG00000004035	POLR1C	100	72.365	Nomascus_leucogenys
ENSXMAG00000015076	polr1c	99	62.178	ENSMEUG00000006778	POLR1C	99	62.178	Notamacropus_eugenii
ENSXMAG00000015076	polr1c	78	73.626	ENSOPRG00000000145	POLR1C	100	73.626	Ochotona_princeps
ENSXMAG00000015076	polr1c	62	70.320	ENSODEG00000017109	-	97	71.226	Octodon_degus
ENSXMAG00000015076	polr1c	100	74.074	ENSODEG00000015831	-	100	73.789	Octodon_degus
ENSXMAG00000015076	polr1c	100	89.744	ENSONIG00000013133	polr1c	98	89.744	Oreochromis_niloticus
ENSXMAG00000015076	polr1c	99	70.774	ENSOANG00000003043	POLR1C	99	70.487	Ornithorhynchus_anatinus
ENSXMAG00000015076	polr1c	100	72.080	ENSOCUG00000005504	POLR1C	99	71.795	Oryctolagus_cuniculus
ENSXMAG00000015076	polr1c	99	85.879	ENSORLG00000019743	polr1c	99	85.879	Oryzias_latipes
ENSXMAG00000015076	polr1c	76	67.037	ENSORLG00020005555	polr1c	81	66.544	Oryzias_latipes_hni
ENSXMAG00000015076	polr1c	99	86.455	ENSORLG00020006489	POLR1C	99	86.455	Oryzias_latipes_hni
ENSXMAG00000015076	polr1c	99	85.591	ENSORLG00015013322	polr1c	100	84.615	Oryzias_latipes_hsok
ENSXMAG00000015076	polr1c	99	86.127	ENSOMEG00000016527	polr1c	99	86.127	Oryzias_melastigma
ENSXMAG00000015076	polr1c	99	71.920	ENSOGAG00000016318	POLR1C	99	71.347	Otolemur_garnettii
ENSXMAG00000015076	polr1c	100	72.934	ENSOARG00000007503	POLR1C	100	72.934	Ovis_aries
ENSXMAG00000015076	polr1c	100	72.934	ENSPPAG00000043678	POLR1C	100	72.650	Pan_paniscus
ENSXMAG00000015076	polr1c	100	73.219	ENSPPRG00000009760	POLR1C	100	72.934	Panthera_pardus
ENSXMAG00000015076	polr1c	100	73.219	ENSPTIG00000014813	POLR1C	100	72.934	Panthera_tigris_altaica
ENSXMAG00000015076	polr1c	100	72.934	ENSPTRG00000018202	POLR1C	100	72.650	Pan_troglodytes
ENSXMAG00000015076	polr1c	100	72.650	ENSPANG00000009025	POLR1C	99	72.650	Papio_anubis
ENSXMAG00000015076	polr1c	100	79.202	ENSPKIG00000009858	polr1c	100	78.917	Paramormyrops_kingsleyae
ENSXMAG00000015076	polr1c	99	74.212	ENSPSIG00000012580	POLR1C	94	73.926	Pelodiscus_sinensis
ENSXMAG00000015076	polr1c	100	71.225	ENSPMGG00000012121	polr1c	100	71.225	Periophthalmus_magnuspinnatus
ENSXMAG00000015076	polr1c	57	30.500	ENSPMGG00000021249	polr2c	77	30.500	Periophthalmus_magnuspinnatus
ENSXMAG00000015076	polr1c	100	72.080	ENSPEMG00000006970	Polr1c	100	71.510	Peromyscus_maniculatus_bairdii
ENSXMAG00000015076	polr1c	56	34.653	ENSPMAG00000004827	polr2c	81	34.653	Petromyzon_marinus
ENSXMAG00000015076	polr1c	99	70.286	ENSPMAG00000005560	polr1c	99	70.000	Petromyzon_marinus
ENSXMAG00000015076	polr1c	99	73.926	ENSPCIG00000028137	POLR1C	98	73.926	Phascolarctos_cinereus
ENSXMAG00000015076	polr1c	100	98.291	ENSPFOG00000014342	POLR1C	100	98.291	Poecilia_formosa
ENSXMAG00000015076	polr1c	100	98.291	ENSPFOG00000014357	polr1c	98	98.291	Poecilia_formosa
ENSXMAG00000015076	polr1c	63	98.198	ENSPLAG00000004111	polr1c	93	98.198	Poecilia_latipinna
ENSXMAG00000015076	polr1c	100	98.291	ENSPMEG00000011877	-	100	98.291	Poecilia_mexicana
ENSXMAG00000015076	polr1c	100	98.291	ENSPMEG00000008420	polr1c	100	98.291	Poecilia_mexicana
ENSXMAG00000015076	polr1c	100	96.866	ENSPREG00000007985	polr1c	100	96.866	Poecilia_reticulata
ENSXMAG00000015076	polr1c	100	72.650	ENSPPYG00000016645	POLR1C	100	72.365	Pongo_abelii
ENSXMAG00000015076	polr1c	100	71.510	ENSPCOG00000024628	POLR1C	100	71.225	Propithecus_coquereli
ENSXMAG00000015076	polr1c	100	67.521	ENSPVAG00000005689	POLR1C	100	67.521	Pteropus_vampyrus
ENSXMAG00000015076	polr1c	100	89.174	ENSPNYG00000003620	polr1c	100	89.174	Pundamilia_nyererei
ENSXMAG00000015076	polr1c	100	82.336	ENSPNAG00000008443	polr1c	100	82.051	Pygocentrus_nattereri
ENSXMAG00000015076	polr1c	100	72.080	ENSRNOG00000019079	Polr1c	100	71.510	Rattus_norvegicus
ENSXMAG00000015076	polr1c	100	72.934	ENSRBIG00000007155	POLR1C	100	72.650	Rhinopithecus_bieti
ENSXMAG00000015076	polr1c	100	72.650	ENSRROG00000000257	POLR1C	100	72.365	Rhinopithecus_roxellana
ENSXMAG00000015076	polr1c	92	47.826	YPR110C	RPC40	95	47.826	Saccharomyces_cerevisiae
ENSXMAG00000015076	polr1c	100	72.934	ENSSBOG00000025735	POLR1C	99	73.718	Saimiri_boliviensis_boliviensis
ENSXMAG00000015076	polr1c	99	66.476	ENSSHAG00000014456	POLR1C	99	66.476	Sarcophilus_harrisii
ENSXMAG00000015076	polr1c	100	81.197	ENSSFOG00015019860	polr1c	100	80.912	Scleropages_formosus
ENSXMAG00000015076	polr1c	100	86.895	ENSSMAG00000018865	polr1c	100	86.895	Scophthalmus_maximus
ENSXMAG00000015076	polr1c	100	90.028	ENSSDUG00000015745	polr1c	91	90.028	Seriola_dumerili
ENSXMAG00000015076	polr1c	100	89.744	ENSSLDG00000018285	polr1c	91	89.744	Seriola_lalandi_dorsalis
ENSXMAG00000015076	polr1c	99	72.543	ENSSPUG00000011822	POLR1C	99	71.676	Sphenodon_punctatus
ENSXMAG00000015076	polr1c	100	87.749	ENSSPAG00000022369	polr1c	100	87.749	Stegastes_partitus
ENSXMAG00000015076	polr1c	100	72.650	ENSSSCG00000028007	POLR1C	99	72.365	Sus_scrofa
ENSXMAG00000015076	polr1c	97	72.271	ENSTGUG00000009159	POLR1C	99	71.976	Taeniopygia_guttata
ENSXMAG00000015076	polr1c	100	83.761	ENSTRUG00000006264	polr1c	100	83.761	Takifugu_rubripes
ENSXMAG00000015076	polr1c	51	71.910	ENSTBEG00000002254	POLR1C	100	71.910	Tupaia_belangeri
ENSXMAG00000015076	polr1c	76	69.663	ENSTTRG00000006344	POLR1C	76	69.288	Tursiops_truncatus
ENSXMAG00000015076	polr1c	100	73.219	ENSUAMG00000025602	POLR1C	100	72.934	Ursus_americanus
ENSXMAG00000015076	polr1c	100	73.219	ENSUMAG00000005938	POLR1C	100	72.934	Ursus_maritimus
ENSXMAG00000015076	polr1c	100	70.370	ENSVVUG00000028922	POLR1C	100	70.370	Vulpes_vulpes
ENSXMAG00000015076	polr1c	100	67.705	ENSXETG00000010882	polr1c	100	66.477	Xenopus_tropicalis
ENSXMAG00000015076	polr1c	100	98.575	ENSXCOG00000014185	polr1c	100	98.575	Xiphophorus_couchianus