EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000015142 (Gene tree)
Gene ID
102226602
Gene Symbol
lig4
Alias
zgc:165595
Full Name
DNA ligase 4
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
4860 bases
Position
chr24:9997610-10002469
Accession
102226602
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000015171RNA_ligasePF09414.101.1e-0811
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000015191-4482XM_005813318ENSXMAP00000015171909 (aa)XP_005813375M4AL27
Gene Model
Click here to download ENSXMAG00000015142's gene model file
Pathways
Pathway IDPathway NameSource
xma03450Non-homologous end-joiningKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000015142's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000015142lig49965.423ENSG00000174405LIG410066.391Homo_sapiens
ENSXMAG00000015142lig49988.816ENSAPOG00000000866lig410088.377Acanthochromis_polyacanthus
ENSXMAG00000015142lig49964.544ENSAMEG00000019685LIG49864.889Ailuropoda_melanoleuca
ENSXMAG00000015142lig49989.572ENSACIG00000018309lig410089.035Amphilophus_citrinellus
ENSXMAG00000015142lig49988.706ENSAOCG00000011768lig410088.268Amphiprion_ocellaris
ENSXMAG00000015142lig49988.925ENSAPEG00000017815lig410088.487Amphiprion_percula
ENSXMAG00000015142lig49988.158ENSATEG00000005583lig410088.268Anabas_testudineus
ENSXMAG00000015142lig49667.617ENSAPLG00000001673LIG49967.617Anas_platyrhynchos
ENSXMAG00000015142lig49967.660ENSACAG00000014566LIG49968.004Anolis_carolinensis
ENSXMAG00000015142lig49965.313ENSANAG00000012446LIG49965.778Aotus_nancymaae
ENSXMAG00000015142lig49987.706ENSACLG00000027051lig410087.281Astatotilapia_calliptera
ENSXMAG00000015142lig410080.828ENSAMXG00000008192lig49580.828Astyanax_mexicanus
ENSXMAG00000015142lig49964.874ENSBTAG00000015868LIG49965.333Bos_taurus
ENSXMAG00000015142lig49964.764ENSCJAG00000014689LIG49965.222Callithrix_jacchus
ENSXMAG00000015142lig49964.654ENSCAFG00000006031LIG49965.111Canis_familiaris
ENSXMAG00000015142lig49964.654ENSCAFG00020021230LIG49965.111Canis_lupus_dingo
ENSXMAG00000015142lig49964.764ENSCHIG00000001019LIG49965.222Capra_hircus
ENSXMAG00000015142lig49864.381ENSCAPG00000006284LIG49964.444Cavia_aperea
ENSXMAG00000015142lig49963.886ENSCPOG00000014266LIG49964.333Cavia_porcellus
ENSXMAG00000015142lig49965.093ENSCCAG00000019971LIG49965.556Cebus_capucinus
ENSXMAG00000015142lig49965.642ENSCATG00000021075LIG49965.778Cercocebus_atys
ENSXMAG00000015142lig49965.093ENSCLAG00000003376LIG49965.556Chinchilla_lanigera
ENSXMAG00000015142lig49965.313ENSCSAG00000000211LIG49965.778Chlorocebus_sabaeus
ENSXMAG00000015142lig49869.256ENSCPBG00000023291LIG49869.420Chrysemys_picta_bellii
ENSXMAG00000015142lig46947.642ENSCING00000009536-9647.468Ciona_intestinalis
ENSXMAG00000015142lig48344.868ENSCSAVG00000010336-9844.782Ciona_savignyi
ENSXMAG00000015142lig49964.654ENSCANG00000005805LIG49965.111Colobus_angolensis_palliatus
ENSXMAG00000015142lig49964.254ENSCGRG00001012072Lig49964.706Cricetulus_griseus_chok1gshd
ENSXMAG00000015142lig49964.254ENSCGRG00000013417Lig49964.706Cricetulus_griseus_crigri
ENSXMAG00000015142lig49784.927ENSCSEG00000013905lig49684.927Cynoglossus_semilaevis
ENSXMAG00000015142lig49991.238ENSCVAG00000007896lig410090.690Cyprinodon_variegatus
ENSXMAG00000015142lig49979.276ENSDARG00000060620lig49879.978Danio_rerio
ENSXMAG00000015142lig49964.693ENSDNOG00000000513LIG49965.150Dasypus_novemcinctus
ENSXMAG00000015142lig49965.313ENSDORG00000027303Lig49965.667Dipodomys_ordii
ENSXMAG00000015142lig48930.824FBgn0030506Lig49030.851Drosophila_melanogaster
ENSXMAG00000015142lig49863.344ENSETEG00000015563LIG49963.596Echinops_telfairi
ENSXMAG00000015142lig410044.620ENSEBUG00000014243lig49944.305Eptatretus_burgeri
ENSXMAG00000015142lig49964.874ENSEASG00005022073LIG49965.333Equus_asinus_asinus
ENSXMAG00000015142lig49964.654ENSECAG00000003257LIG49965.111Equus_caballus
ENSXMAG00000015142lig49981.998ENSELUG00000006787lig49882.943Esox_lucius
ENSXMAG00000015142lig49864.452ENSFCAG00000031985LIG49964.516Felis_catus
ENSXMAG00000015142lig48869.765ENSFALG00000004214LIG49670.455Ficedula_albicollis
ENSXMAG00000015142lig49963.407ENSFDAG00000008973LIG49963.849Fukomys_damarensis
ENSXMAG00000015142lig410092.114ENSFHEG00000007398lig49191.566Fundulus_heteroclitus
ENSXMAG00000015142lig48578.177ENSGMOG00000012843lig49978.065Gadus_morhua
ENSXMAG00000015142lig49965.899ENSGALG00000016854LIG49866.444Gallus_gallus
ENSXMAG00000015142lig49997.582ENSGAFG00000019779lig49697.582Gambusia_affinis
ENSXMAG00000015142lig49983.991ENSGACG00000014135lig49884.787Gasterosteus_aculeatus
ENSXMAG00000015142lig49965.203ENSGGOG00000027771LIG49965.667Gorilla_gorilla
ENSXMAG00000015142lig49987.486ENSHBUG00000006245lig410087.061Haplochromis_burtoni
ENSXMAG00000015142lig49964.105ENSHGLG00000000718LIG49964.556Heterocephalus_glaber_female
ENSXMAG00000015142lig49964.105ENSHGLG00100003265LIG49964.556Heterocephalus_glaber_male
ENSXMAG00000015142lig49981.818ENSHCOG00000012010lig410081.818Hippocampus_comes
ENSXMAG00000015142lig49978.516ENSIPUG00000013748lig49878.747Ictalurus_punctatus
ENSXMAG00000015142lig49865.819ENSSTOG00000024303LIG49965.889Ictidomys_tridecemlineatus
ENSXMAG00000015142lig49964.325ENSJJAG00000006750Lig49964.667Jaculus_jaculus
ENSXMAG00000015142lig410086.528ENSKMAG00000001149lig410086.623Kryptolebias_marmoratus
ENSXMAG00000015142lig49186.941ENSLBEG00000014578lig410086.941Labrus_bergylta
ENSXMAG00000015142lig49869.077ENSLACG00000003282LIG49869.162Latimeria_chalumnae
ENSXMAG00000015142lig49972.878ENSLOCG00000008901lig49773.163Lepisosteus_oculatus
ENSXMAG00000015142lig49964.074ENSLAFG00000031152LIG49964.412Loxodonta_africana
ENSXMAG00000015142lig49965.423ENSMFAG00000037235LIG49965.889Macaca_fascicularis
ENSXMAG00000015142lig49965.203ENSMMUG00000008874LIG49965.667Macaca_mulatta
ENSXMAG00000015142lig49965.423ENSMNEG00000023575LIG49965.889Macaca_nemestrina
ENSXMAG00000015142lig49965.203ENSMLEG00000026720LIG49965.667Mandrillus_leucophaeus
ENSXMAG00000015142lig49988.487ENSMAMG00000008472lig49988.048Mastacembelus_armatus
ENSXMAG00000015142lig49987.706ENSMZEG00005001855lig410087.281Maylandia_zebra
ENSXMAG00000015142lig49866.482ENSMGAG00000015532LIG49866.555Meleagris_gallopavo
ENSXMAG00000015142lig49963.447ENSMOCG00000019000Lig49963.889Microtus_ochrogaster
ENSXMAG00000015142lig49986.184ENSMMOG00000004390lig410086.184Mola_mola
ENSXMAG00000015142lig49965.680ENSMODG00000025064LIG49965.927Monodelphis_domestica
ENSXMAG00000015142lig49987.445ENSMALG00000008555lig410087.445Monopterus_albus
ENSXMAG00000015142lig49964.215MGP_CAROLIEiJ_G0030809Lig49964.667Mus_caroli
ENSXMAG00000015142lig49963.886ENSMUSG00000049717Lig49964.333Mus_musculus
ENSXMAG00000015142lig49964.325MGP_PahariEiJ_G0021270Lig49964.778Mus_pahari
ENSXMAG00000015142lig49964.215MGP_SPRETEiJ_G0031917Lig49964.667Mus_spretus
ENSXMAG00000015142lig49964.874ENSMPUG00000018675LIG49965.222Mustela_putorius_furo
ENSXMAG00000015142lig49965.423ENSMLUG00000001267LIG49965.889Myotis_lucifugus
ENSXMAG00000015142lig49964.654ENSNGAG00000013258Lig49965.000Nannospalax_galili
ENSXMAG00000015142lig49987.486ENSNBRG00000021252lig410087.390Neolamprologus_brichardi
ENSXMAG00000015142lig49964.764ENSNLEG00000007888LIG49965.222Nomascus_leucogenys
ENSXMAG00000015142lig49963.447ENSOPRG00000005765LIG49963.778Ochotona_princeps
ENSXMAG00000015142lig49963.557ENSODEG00000019683LIG49964.000Octodon_degus
ENSXMAG00000015142lig49987.925ENSONIG00000011969lig49987.500Oreochromis_niloticus
ENSXMAG00000015142lig49964.105ENSOCUG00000015734LIG49964.444Oryctolagus_cuniculus
ENSXMAG00000015142lig49983.716ENSORLG00000004041lig49884.615Oryzias_latipes
ENSXMAG00000015142lig49984.153ENSORLG00020019607lig49885.061Oryzias_latipes_hni
ENSXMAG00000015142lig49984.044ENSORLG00015017754lig49884.950Oryzias_latipes_hsok
ENSXMAG00000015142lig47689.275ENSOMEG00000003459lig410089.275Oryzias_melastigma
ENSXMAG00000015142lig49964.912ENSOGAG00000032120LIG49865.222Otolemur_garnettii
ENSXMAG00000015142lig48268.683ENSOARG00000005590LIG49769.304Ovis_aries
ENSXMAG00000015142lig49965.203ENSPPAG00000032998LIG49965.667Pan_paniscus
ENSXMAG00000015142lig49865.155ENSPPRG00000017804LIG49965.222Panthera_pardus
ENSXMAG00000015142lig49865.044ENSPTIG00000010051LIG49965.111Panthera_tigris_altaica
ENSXMAG00000015142lig49965.313ENSPTRG00000006025LIG49965.778Pan_troglodytes
ENSXMAG00000015142lig49965.752ENSPANG00000007562LIG49965.889Papio_anubis
ENSXMAG00000015142lig49978.477ENSPKIG00000011645lig49779.083Paramormyrops_kingsleyae
ENSXMAG00000015142lig49869.299ENSPSIG00000001504LIG49869.351Pelodiscus_sinensis
ENSXMAG00000015142lig49881.180ENSPMGG00000013486lig49881.180Periophthalmus_magnuspinnatus
ENSXMAG00000015142lig49864.309ENSPEMG00000000076Lig49964.262Peromyscus_maniculatus_bairdii
ENSXMAG00000015142lig49964.912ENSPCIG00000021882LIG49965.372Phascolarctos_cinereus
ENSXMAG00000015142lig49998.128ENSPFOG00000000797lig410098.128Poecilia_formosa
ENSXMAG00000015142lig49998.018ENSPLAG00000001196lig410098.018Poecilia_latipinna
ENSXMAG00000015142lig49998.238ENSPMEG00000021353lig410098.238Poecilia_mexicana
ENSXMAG00000015142lig49997.577ENSPREG00000007323lig410097.577Poecilia_reticulata
ENSXMAG00000015142lig49964.654ENSPPYG00000005540LIG49965.111Pongo_abelii
ENSXMAG00000015142lig49964.544ENSPVAG00000016403LIG49965.000Pteropus_vampyrus
ENSXMAG00000015142lig49987.706ENSPNYG00000009660lig410087.281Pundamilia_nyererei
ENSXMAG00000015142lig49882.294ENSPNAG00000028056lig49982.215Pygocentrus_nattereri
ENSXMAG00000015142lig49882.294ENSPNAG00000028069LIG49982.215Pygocentrus_nattereri
ENSXMAG00000015142lig49963.996ENSRNOG00000014605Lig49964.333Rattus_norvegicus
ENSXMAG00000015142lig49964.544ENSRBIG00000039962LIG49965.000Rhinopithecus_bieti
ENSXMAG00000015142lig49965.093ENSRROG00000006040LIG49965.556Rhinopithecus_roxellana
ENSXMAG00000015142lig49964.984ENSSBOG00000019029LIG49965.444Saimiri_boliviensis_boliviensis
ENSXMAG00000015142lig49962.939ENSSHAG00000009525LIG49963.707Sarcophilus_harrisii
ENSXMAG00000015142lig49978.965ENSSFOG00015012835lig49879.642Scleropages_formosus
ENSXMAG00000015142lig49983.224ENSSMAG00000011267lig410082.675Scophthalmus_maximus
ENSXMAG00000015142lig49987.869ENSSDUG00000010343lig410087.650Seriola_dumerili
ENSXMAG00000015142lig49986.339ENSSLDG00000003239lig410086.120Seriola_lalandi_dorsalis
ENSXMAG00000015142lig49964.466ENSSARG00000006573LIG49964.302Sorex_araneus
ENSXMAG00000015142lig49269.048ENSSPUG00000002444LIG410068.810Sphenodon_punctatus
ENSXMAG00000015142lig49988.816ENSSPAG00000001609lig410088.816Stegastes_partitus
ENSXMAG00000015142lig49964.725ENSSSCG00000009540LIG49965.072Sus_scrofa
ENSXMAG00000015142lig49867.222ENSTGUG00000010795LIG49967.299Taeniopygia_guttata
ENSXMAG00000015142lig49986.732ENSTRUG00000009984lig410086.184Takifugu_rubripes
ENSXMAG00000015142lig49984.101ENSTNIG00000010348lig410083.991Tetraodon_nigroviridis
ENSXMAG00000015142lig49964.874ENSTBEG00000017741LIG49965.333Tupaia_belangeri
ENSXMAG00000015142lig49964.215ENSTTRG00000012660LIG49964.667Tursiops_truncatus
ENSXMAG00000015142lig49964.544ENSUAMG00000003773LIG49964.889Ursus_americanus
ENSXMAG00000015142lig49868.151ENSXETG00000002654lig49768.707Xenopus_tropicalis
ENSXMAG00000015142lig49998.568ENSXCOG00000017401lig410098.568Xiphophorus_couchianus

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