EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000015540 (Gene tree)
Gene ID: 102221245
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 5920 bases
Position: chr5:31077040-31082959
Accession: 102221245
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000015564	PPR	PF01535.20	2.3e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000015587	-	4344	XM_005811967	ENSXMAP00000015564	691 (aa)	XP_005812024	M4AM70

Gene Model

Click here to download ENSXMAG00000015540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000015540's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000015540	ptcd1	84	47.204	ENSG00000248919	ATP5MF-PTCD1	80	47.039	Homo_sapiens
ENSXMAG00000015540	ptcd1	84	47.204	ENSG00000106246	PTCD1	86	47.039	Homo_sapiens
ENSXMAG00000015540	ptcd1	88	64.355	ENSAPOG00000010679	ptcd1	96	64.355	Acanthochromis_polyacanthus
ENSXMAG00000015540	ptcd1	86	48.784	ENSAMEG00000006224	-	78	49.831	Ailuropoda_melanoleuca
ENSXMAG00000015540	ptcd1	86	71.287	ENSACIG00000017861	ptcd1	87	71.933	Amphilophus_citrinellus
ENSXMAG00000015540	ptcd1	98	63.415	ENSAOCG00000020741	-	98	62.984	Amphiprion_ocellaris
ENSXMAG00000015540	ptcd1	87	65.000	ENSAOCG00000022617	ptcd1	93	64.677	Amphiprion_ocellaris
ENSXMAG00000015540	ptcd1	99	62.589	ENSAPEG00000022632	ptcd1	98	62.162	Amphiprion_percula
ENSXMAG00000015540	ptcd1	91	67.610	ENSATEG00000007016	ptcd1	92	67.431	Anabas_testudineus
ENSXMAG00000015540	ptcd1	84	47.333	ENSAPLG00000006862	-	91	47.952	Anas_platyrhynchos
ENSXMAG00000015540	ptcd1	82	48.054	ENSACAG00000012871	-	78	48.054	Anolis_carolinensis
ENSXMAG00000015540	ptcd1	82	48.129	ENSANAG00000035790	-	92	46.105	Aotus_nancymaae
ENSXMAG00000015540	ptcd1	90	69.953	ENSACLG00000002824	ptcd1	89	69.797	Astatotilapia_calliptera
ENSXMAG00000015540	ptcd1	82	50.163	ENSAMXG00000037292	ptcd1	87	49.679	Astyanax_mexicanus
ENSXMAG00000015540	ptcd1	84	46.906	ENSBTAG00000020440	-	75	47.068	Bos_taurus
ENSXMAG00000015540	ptcd1	86	45.298	ENSCJAG00000015815	-	90	45.298	Callithrix_jacchus
ENSXMAG00000015540	ptcd1	92	45.362	ENSCAFG00000015055	-	83	47.596	Canis_familiaris
ENSXMAG00000015540	ptcd1	92	45.362	ENSCAFG00020014480	-	83	47.596	Canis_lupus_dingo
ENSXMAG00000015540	ptcd1	90	46.130	ENSCHIG00000027000	-	90	46.285	Capra_hircus
ENSXMAG00000015540	ptcd1	82	45.896	ENSTSYG00000029495	-	85	45.634	Carlito_syrichta
ENSXMAG00000015540	ptcd1	82	46.644	ENSCAPG00000014660	-	90	46.281	Cavia_aperea
ENSXMAG00000015540	ptcd1	82	47.315	ENSCPOG00000001780	-	89	45.683	Cavia_porcellus
ENSXMAG00000015540	ptcd1	82	48.217	ENSCCAG00000034025	-	86	47.525	Cebus_capucinus
ENSXMAG00000015540	ptcd1	85	47.974	ENSCATG00000040859	-	90	47.152	Cercocebus_atys
ENSXMAG00000015540	ptcd1	82	48.217	ENSCLAG00000006354	-	84	48.311	Chinchilla_lanigera
ENSXMAG00000015540	ptcd1	77	48.654	ENSCSAG00000017794	-	82	48.393	Chlorocebus_sabaeus
ENSXMAG00000015540	ptcd1	81	47.204	ENSCPBG00000020866	-	82	47.291	Chrysemys_picta_bellii
ENSXMAG00000015540	ptcd1	87	46.677	ENSCANG00000023441	-	86	47.841	Colobus_angolensis_palliatus
ENSXMAG00000015540	ptcd1	86	46.365	ENSCGRG00001023686	Ptcd1	83	47.973	Cricetulus_griseus_chok1gshd
ENSXMAG00000015540	ptcd1	86	46.365	ENSCGRG00000015031	Ptcd1	83	47.973	Cricetulus_griseus_crigri
ENSXMAG00000015540	ptcd1	93	61.019	ENSCSEG00000002378	ptcd1	94	60.392	Cynoglossus_semilaevis
ENSXMAG00000015540	ptcd1	99	75.676	ENSCVAG00000015826	ptcd1	99	74.964	Cyprinodon_variegatus
ENSXMAG00000015540	ptcd1	92	77.743	ENSCVAG00000003621	ptcd1	98	77.280	Cyprinodon_variegatus
ENSXMAG00000015540	ptcd1	92	48.657	ENSDARG00000076176	ptcd1	93	48.204	Danio_rerio
ENSXMAG00000015540	ptcd1	82	48.223	ENSDNOG00000009957	-	86	46.962	Dasypus_novemcinctus
ENSXMAG00000015540	ptcd1	82	46.769	ENSDORG00000000740	Ptcd1	85	46.780	Dipodomys_ordii
ENSXMAG00000015540	ptcd1	80	38.413	ENSEBUG00000014515	ptcd1	93	38.036	Eptatretus_burgeri
ENSXMAG00000015540	ptcd1	85	47.974	ENSEASG00005002480	-	84	49.336	Equus_asinus_asinus
ENSXMAG00000015540	ptcd1	85	47.974	ENSECAG00000016617	-	84	49.169	Equus_caballus
ENSXMAG00000015540	ptcd1	87	56.124	ENSELUG00000016517	ptcd1	84	56.556	Esox_lucius
ENSXMAG00000015540	ptcd1	82	48.904	ENSFCAG00000015069	-	84	49.076	Felis_catus
ENSXMAG00000015540	ptcd1	89	44.796	ENSFALG00000013803	-	92	44.578	Ficedula_albicollis
ENSXMAG00000015540	ptcd1	82	48.731	ENSFDAG00000006393	-	84	48.822	Fukomys_damarensis
ENSXMAG00000015540	ptcd1	78	79.228	ENSFHEG00000012491	ptcd1	94	79.044	Fundulus_heteroclitus
ENSXMAG00000015540	ptcd1	87	62.439	ENSGMOG00000007639	ptcd1	98	62.378	Gadus_morhua
ENSXMAG00000015540	ptcd1	81	46.434	ENSGALG00000004711	-	78	48.294	Gallus_gallus
ENSXMAG00000015540	ptcd1	100	92.693	ENSGAFG00000013175	ptcd1	100	92.550	Gambusia_affinis
ENSXMAG00000015540	ptcd1	90	68.850	ENSGACG00000016607	ptcd1	97	68.900	Gasterosteus_aculeatus
ENSXMAG00000015540	ptcd1	78	47.257	ENSGAGG00000021832	-	83	47.237	Gopherus_agassizii
ENSXMAG00000015540	ptcd1	88	45.925	ENSGGOG00000015123	-	86	47.368	Gorilla_gorilla
ENSXMAG00000015540	ptcd1	90	69.797	ENSHBUG00000018275	ptcd1	89	69.640	Haplochromis_burtoni
ENSXMAG00000015540	ptcd1	87	46.069	ENSHGLG00000017621	-	89	46.226	Heterocephalus_glaber_female
ENSXMAG00000015540	ptcd1	87	46.069	ENSHGLG00100007218	-	89	46.226	Heterocephalus_glaber_male
ENSXMAG00000015540	ptcd1	91	57.937	ENSHCOG00000010784	ptcd1	91	58.003	Hippocampus_comes
ENSXMAG00000015540	ptcd1	83	49.833	ENSSTOG00000001682	-	85	49.416	Ictidomys_tridecemlineatus
ENSXMAG00000015540	ptcd1	89	45.525	ENSJJAG00000000319	Ptcd1	89	46.709	Jaculus_jaculus
ENSXMAG00000015540	ptcd1	94	70.758	ENSKMAG00000008708	ptcd1	94	70.606	Kryptolebias_marmoratus
ENSXMAG00000015540	ptcd1	98	62.569	ENSLBEG00000008061	ptcd1	98	62.983	Labrus_bergylta
ENSXMAG00000015540	ptcd1	84	49.340	ENSLACG00000011172	ptcd1	82	50.170	Latimeria_chalumnae
ENSXMAG00000015540	ptcd1	86	49.922	ENSLOCG00000004833	ptcd1	93	50.000	Lepisosteus_oculatus
ENSXMAG00000015540	ptcd1	85	45.719	ENSLAFG00000002588	-	76	48.073	Loxodonta_africana
ENSXMAG00000015540	ptcd1	85	47.974	ENSMFAG00000041324	-	90	47.152	Macaca_fascicularis
ENSXMAG00000015540	ptcd1	85	47.812	ENSMMUG00000030408	-	90	46.994	Macaca_mulatta
ENSXMAG00000015540	ptcd1	85	47.974	ENSMNEG00000043786	-	90	47.152	Macaca_nemestrina
ENSXMAG00000015540	ptcd1	85	36.304	ENSMLEG00000031179	-	81	37.997	Mandrillus_leucophaeus
ENSXMAG00000015540	ptcd1	99	63.827	ENSMAMG00000007623	ptcd1	98	63.827	Mastacembelus_armatus
ENSXMAG00000015540	ptcd1	90	70.000	ENSMZEG00005012722	ptcd1	89	69.844	Maylandia_zebra
ENSXMAG00000015540	ptcd1	81	47.973	ENSMGAG00000004211	-	72	49.177	Meleagris_gallopavo
ENSXMAG00000015540	ptcd1	82	46.441	ENSMICG00000017428	-	85	46.500	Microcebus_murinus
ENSXMAG00000015540	ptcd1	99	64.138	ENSMMOG00000020243	ptcd1	94	70.724	Mola_mola
ENSXMAG00000015540	ptcd1	84	44.984	ENSMODG00000001350	-	82	45.875	Monodelphis_domestica
ENSXMAG00000015540	ptcd1	97	63.728	ENSMALG00000018442	ptcd1	99	63.165	Monopterus_albus
ENSXMAG00000015540	ptcd1	87	46.106	MGP_CAROLIEiJ_G0028011	Ptcd1	91	45.950	Mus_caroli
ENSXMAG00000015540	ptcd1	87	45.086	ENSMUSG00000029624	Ptcd1	91	45.866	Mus_musculus
ENSXMAG00000015540	ptcd1	87	46.646	MGP_PahariEiJ_G0024580	Ptcd1	91	46.490	Mus_pahari
ENSXMAG00000015540	ptcd1	87	45.866	MGP_SPRETEiJ_G0029012	Ptcd1	91	45.710	Mus_spretus
ENSXMAG00000015540	ptcd1	86	48.377	ENSMPUG00000016518	-	89	48.325	Mustela_putorius_furo
ENSXMAG00000015540	ptcd1	85	48.613	ENSMLUG00000010994	-	78	49.493	Myotis_lucifugus
ENSXMAG00000015540	ptcd1	98	64.132	ENSNBRG00000010079	ptcd1	95	67.688	Neolamprologus_brichardi
ENSXMAG00000015540	ptcd1	75	46.196	ENSNLEG00000011060	-	88	47.510	Nomascus_leucogenys
ENSXMAG00000015540	ptcd1	83	45.605	ENSMEUG00000006930	-	85	45.605	Notamacropus_eugenii
ENSXMAG00000015540	ptcd1	75	61.947	ENSOPRG00000013647	-	74	61.538	Ochotona_princeps
ENSXMAG00000015540	ptcd1	86	68.966	ENSONIG00000003168	ptcd1	100	68.801	Oreochromis_niloticus
ENSXMAG00000015540	ptcd1	77	45.796	ENSOANG00000007728	-	73	45.796	Ornithorhynchus_anatinus
ENSXMAG00000015540	ptcd1	87	46.624	ENSOCUG00000010584	-	84	47.264	Oryctolagus_cuniculus
ENSXMAG00000015540	ptcd1	89	70.645	ENSORLG00000009275	ptcd1	87	72.542	Oryzias_latipes
ENSXMAG00000015540	ptcd1	89	70.806	ENSORLG00020000988	ptcd1	87	72.712	Oryzias_latipes_hni
ENSXMAG00000015540	ptcd1	96	66.519	ENSORLG00015010557	ptcd1	95	68.062	Oryzias_latipes_hsok
ENSXMAG00000015540	ptcd1	96	67.656	ENSOMEG00000020627	ptcd1	95	69.243	Oryzias_melastigma
ENSXMAG00000015540	ptcd1	82	47.547	ENSOGAG00000010877	-	85	47.643	Otolemur_garnettii
ENSXMAG00000015540	ptcd1	84	42.468	ENSOARG00000018676	-	86	42.628	Ovis_aries
ENSXMAG00000015540	ptcd1	84	46.016	ENSPPAG00000036024	-	86	45.854	Pan_paniscus
ENSXMAG00000015540	ptcd1	82	49.412	ENSPPRG00000003478	-	84	49.412	Panthera_pardus
ENSXMAG00000015540	ptcd1	88	44.876	ENSPTRG00000019452	-	86	46.016	Pan_troglodytes
ENSXMAG00000015540	ptcd1	85	48.136	ENSPANG00000016730	-	90	47.310	Papio_anubis
ENSXMAG00000015540	ptcd1	85	49.515	ENSPKIG00000014215	ptcd1	86	51.433	Paramormyrops_kingsleyae
ENSXMAG00000015540	ptcd1	81	46.508	ENSPSIG00000011184	-	98	46.167	Pelodiscus_sinensis
ENSXMAG00000015540	ptcd1	71	40.848	ENSPMAG00000009667	ptcd1	100	40.848	Petromyzon_marinus
ENSXMAG00000015540	ptcd1	82	45.410	ENSPCIG00000024778	-	83	44.872	Phascolarctos_cinereus
ENSXMAG00000015540	ptcd1	100	91.989	ENSPFOG00000004458	ptcd1	99	91.989	Poecilia_formosa
ENSXMAG00000015540	ptcd1	100	91.559	ENSPLAG00000011051	ptcd1	99	91.559	Poecilia_latipinna
ENSXMAG00000015540	ptcd1	100	91.559	ENSPMEG00000020547	ptcd1	99	91.559	Poecilia_mexicana
ENSXMAG00000015540	ptcd1	100	89.143	ENSPREG00000000059	ptcd1	100	89.000	Poecilia_reticulata
ENSXMAG00000015540	ptcd1	87	46.530	ENSPPYG00000017377	-	91	47.769	Pongo_abelii
ENSXMAG00000015540	ptcd1	72	60.976	ENSPCAG00000001852	-	81	60.976	Procavia_capensis
ENSXMAG00000015540	ptcd1	82	47.288	ENSPCOG00000018596	-	85	47.333	Propithecus_coquereli
ENSXMAG00000015540	ptcd1	56	55.052	ENSPVAG00000007529	-	54	59.504	Pteropus_vampyrus
ENSXMAG00000015540	ptcd1	90	69.797	ENSPNYG00000019993	ptcd1	89	69.640	Pundamilia_nyererei
ENSXMAG00000015540	ptcd1	86	49.302	ENSPNAG00000014931	ptcd1	90	49.762	Pygocentrus_nattereri
ENSXMAG00000015540	ptcd1	81	47.797	ENSRNOG00000000987	Ptcd1	85	47.723	Rattus_norvegicus
ENSXMAG00000015540	ptcd1	88	46.154	ENSRBIG00000043393	-	86	47.030	Rhinopithecus_bieti
ENSXMAG00000015540	ptcd1	88	47.393	ENSRROG00000036420	-	86	48.339	Rhinopithecus_roxellana
ENSXMAG00000015540	ptcd1	82	48.552	ENSSBOG00000024114	-	90	46.508	Saimiri_boliviensis_boliviensis
ENSXMAG00000015540	ptcd1	83	47.563	ENSSHAG00000011376	-	92	47.185	Sarcophilus_harrisii
ENSXMAG00000015540	ptcd1	85	50.968	ENSSFOG00015007909	ptcd1	84	50.806	Scleropages_formosus
ENSXMAG00000015540	ptcd1	89	66.035	ENSSMAG00000000218	ptcd1	99	65.877	Scophthalmus_maximus
ENSXMAG00000015540	ptcd1	89	68.829	ENSSDUG00000015671	ptcd1	88	72.259	Seriola_dumerili
ENSXMAG00000015540	ptcd1	89	68.829	ENSSLDG00000014261	ptcd1	86	72.259	Seriola_lalandi_dorsalis
ENSXMAG00000015540	ptcd1	88	45.098	ENSSPUG00000003540	-	89	44.947	Sphenodon_punctatus
ENSXMAG00000015540	ptcd1	99	64.656	ENSSPAG00000011049	ptcd1	99	64.516	Stegastes_partitus
ENSXMAG00000015540	ptcd1	82	49.320	ENSSSCG00000007622	-	89	49.239	Sus_scrofa
ENSXMAG00000015540	ptcd1	81	46.724	ENSTGUG00000007563	-	95	46.907	Taeniopygia_guttata
ENSXMAG00000015540	ptcd1	90	66.202	ENSTRUG00000013471	ptcd1	90	66.260	Takifugu_rubripes
ENSXMAG00000015540	ptcd1	90	65.630	ENSTNIG00000008271	ptcd1	90	67.044	Tetraodon_nigroviridis
ENSXMAG00000015540	ptcd1	88	46.445	ENSTBEG00000011021	-	86	47.368	Tupaia_belangeri
ENSXMAG00000015540	ptcd1	84	47.769	ENSTTRG00000003006	-	87	47.769	Tursiops_truncatus
ENSXMAG00000015540	ptcd1	82	48.818	ENSUAMG00000008049	-	84	49.155	Ursus_americanus
ENSXMAG00000015540	ptcd1	86	48.077	ENSVVUG00000008836	-	89	48.077	Vulpes_vulpes
ENSXMAG00000015540	ptcd1	82	48.067	ENSXETG00000009891	ptcd1	85	47.739	Xenopus_tropicalis