EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000016090 (Gene tree)
Gene ID: 102237787
Gene Symbol: -
Alias: -
Full Name: probable ATP-dependent RNA helicase ddx6
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 12002 bases
Position: chr13:14094230-14106231
Accession: 102237787
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000026470	DEAD	PF00270.29	3.5e-42	1	1
ENSXMAP00000016124	DEAD	PF00270.29	1.5e-25	1	2
ENSXMAP00000016124	DEAD	PF00270.29	1.5e-25	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000040626	-	6874	XM_014470161	ENSXMAP00000026470	483 (aa)	XP_014325647	UPI000293DEAF
ENSXMAT00000016148	-	1305	-	ENSXMAP00000016124	434 (aa)	-	M4ANS9

Gene Model

Click here to download ENSXMAG00000016090's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000016090's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000016090	-	98	86.392	ENSAPOG00000014829	ddx61	99	86.392	Acanthochromis_polyacanthus
ENSXMAG00000016090	-	78	95.745	ENSAPOG00000023627	-	95	95.745	Acanthochromis_polyacanthus
ENSXMAG00000016090	-	100	85.510	ENSACIG00000018355	-	100	85.510	Amphilophus_citrinellus
ENSXMAG00000016090	-	100	92.057	ENSAOCG00000006269	-	100	92.653	Amphiprion_ocellaris
ENSXMAG00000016090	-	98	87.190	ENSAOCG00000007627	ddx61	99	87.190	Amphiprion_ocellaris
ENSXMAG00000016090	-	98	87.190	ENSAPEG00000007293	ddx61	99	87.190	Amphiprion_percula
ENSXMAG00000016090	-	100	92.057	ENSAPEG00000020642	-	100	92.653	Amphiprion_percula
ENSXMAG00000016090	-	100	92.057	ENSAPEG00000021368	-	100	92.653	Amphiprion_percula
ENSXMAG00000016090	-	100	91.633	ENSATEG00000005424	-	100	91.633	Anabas_testudineus
ENSXMAG00000016090	-	98	86.486	ENSATEG00000011302	ddx61	99	86.486	Anabas_testudineus
ENSXMAG00000016090	-	100	92.857	ENSACLG00000003260	-	100	92.857	Astatotilapia_calliptera
ENSXMAG00000016090	-	97	86.875	ENSACLG00000027620	ddx61	99	86.875	Astatotilapia_calliptera
ENSXMAG00000016090	-	98	89.072	ENSAMXG00000033980	-	98	89.072	Astyanax_mexicanus
ENSXMAG00000016090	-	95	88.034	ENSAMXG00000032542	ddx61	99	86.542	Astyanax_mexicanus
ENSXMAG00000016090	-	100	90.612	ENSCSEG00000009893	-	100	90.612	Cynoglossus_semilaevis
ENSXMAG00000016090	-	100	95.859	ENSCVAG00000011006	-	100	95.859	Cyprinodon_variegatus
ENSXMAG00000016090	-	98	85.892	ENSDARG00000018425	ddx61	99	85.892	Danio_rerio
ENSXMAG00000016090	-	98	89.256	ENSELUG00000022538	-	98	89.256	Esox_lucius
ENSXMAG00000016090	-	98	88.358	ENSELUG00000020545	ddx61	98	88.358	Esox_lucius
ENSXMAG00000016090	-	100	96.273	ENSFHEG00000015487	-	100	96.273	Fundulus_heteroclitus
ENSXMAG00000016090	-	95	87.686	ENSGMOG00000013762	ddx61	99	86.667	Gadus_morhua
ENSXMAG00000016090	-	65	85.410	ENSGMOG00000003561	-	100	86.850	Gadus_morhua
ENSXMAG00000016090	-	100	99.586	ENSGAFG00000015865	-	100	99.586	Gambusia_affinis
ENSXMAG00000016090	-	99	90.496	ENSGACG00000002413	-	100	90.496	Gasterosteus_aculeatus
ENSXMAG00000016090	-	98	85.421	ENSGACG00000003401	ddx61	100	85.421	Gasterosteus_aculeatus
ENSXMAG00000016090	-	97	87.083	ENSHBUG00000017832	ddx61	99	87.083	Haplochromis_burtoni
ENSXMAG00000016090	-	100	92.857	ENSHBUG00000017033	-	100	92.857	Haplochromis_burtoni
ENSXMAG00000016090	-	100	86.327	ENSHCOG00000012238	-	100	86.327	Hippocampus_comes
ENSXMAG00000016090	-	97	84.926	ENSHCOG00000008184	ddx61	98	84.926	Hippocampus_comes
ENSXMAG00000016090	-	96	88.699	ENSIPUG00000008367	-	99	86.957	Ictalurus_punctatus
ENSXMAG00000016090	-	95	85.961	ENSIPUG00000012823	DDX6	99	84.034	Ictalurus_punctatus
ENSXMAG00000016090	-	100	93.061	ENSKMAG00000007213	-	100	93.061	Kryptolebias_marmoratus
ENSXMAG00000016090	-	98	86.694	ENSLBEG00000001740	ddx61	99	86.694	Labrus_bergylta
ENSXMAG00000016090	-	100	89.336	ENSLBEG00000016890	-	100	89.955	Labrus_bergylta
ENSXMAG00000016090	-	95	85.865	ENSLACG00000015214	ddx61	98	85.865	Latimeria_chalumnae
ENSXMAG00000016090	-	99	49.380	ENSLOCG00000004352	ddx61	98	50.113	Lepisosteus_oculatus
ENSXMAG00000016090	-	98	87.526	ENSMAMG00000005321	ddx61	98	87.526	Mastacembelus_armatus
ENSXMAG00000016090	-	100	92.261	ENSMAMG00000005559	-	100	92.261	Mastacembelus_armatus
ENSXMAG00000016090	-	97	87.083	ENSMZEG00005003556	ddx61	99	87.083	Maylandia_zebra
ENSXMAG00000016090	-	100	92.857	ENSMZEG00005026268	-	100	92.857	Maylandia_zebra
ENSXMAG00000016090	-	96	87.131	ENSMMOG00000007415	ddx61	98	87.131	Mola_mola
ENSXMAG00000016090	-	73	76.487	ENSMMOG00000008825	-	92	76.487	Mola_mola
ENSXMAG00000016090	-	100	91.156	ENSMMOG00000013694	-	100	91.156	Mola_mola
ENSXMAG00000016090	-	98	75.670	ENSMALG00000013776	ddx61	97	75.670	Monopterus_albus
ENSXMAG00000016090	-	100	91.429	ENSMALG00000013817	-	100	91.429	Monopterus_albus
ENSXMAG00000016090	-	100	86.327	ENSNBRG00000015075	-	100	86.327	Neolamprologus_brichardi
ENSXMAG00000016090	-	98	79.917	ENSNBRG00000015800	ddx61	100	79.917	Neolamprologus_brichardi
ENSXMAG00000016090	-	98	86.749	ENSONIG00000011418	ddx61	100	86.749	Oreochromis_niloticus
ENSXMAG00000016090	-	100	93.061	ENSONIG00000013748	-	100	93.061	Oreochromis_niloticus
ENSXMAG00000016090	-	100	90.930	ENSORLG00000009178	-	100	90.930	Oryzias_latipes
ENSXMAG00000016090	-	100	91.383	ENSORLG00020015515	-	100	91.383	Oryzias_latipes_hni
ENSXMAG00000016090	-	100	91.156	ENSORLG00015006764	-	100	91.156	Oryzias_latipes_hsok
ENSXMAG00000016090	-	97	92.757	ENSOMEG00000022326	-	99	92.757	Oryzias_melastigma
ENSXMAG00000016090	-	96	90.063	ENSPKIG00000024264	ddx61	99	88.660	Paramormyrops_kingsleyae
ENSXMAG00000016090	-	100	81.520	ENSPMGG00000013355	-	100	81.520	Periophthalmus_magnuspinnatus
ENSXMAG00000016090	-	100	99.586	ENSPFOG00000005750	-	100	99.586	Poecilia_formosa
ENSXMAG00000016090	-	100	99.586	ENSPLAG00000000403	-	100	99.586	Poecilia_latipinna
ENSXMAG00000016090	-	100	99.172	ENSPMEG00000023737	-	100	99.172	Poecilia_mexicana
ENSXMAG00000016090	-	97	80.851	ENSPNYG00000015045	ddx61	99	80.851	Pundamilia_nyererei
ENSXMAG00000016090	-	100	92.857	ENSPNYG00000003986	-	100	92.857	Pundamilia_nyererei
ENSXMAG00000016090	-	98	88.866	ENSPNAG00000008742	-	98	88.866	Pygocentrus_nattereri
ENSXMAG00000016090	-	98	86.307	ENSPNAG00000024072	ddx61	99	86.307	Pygocentrus_nattereri
ENSXMAG00000016090	-	95	89.831	ENSSFOG00015021404	ddx61	99	87.602	Scleropages_formosus
ENSXMAG00000016090	-	95	87.420	ENSSMAG00000006591	ddx61	99	84.394	Scophthalmus_maximus
ENSXMAG00000016090	-	100	90.612	ENSSMAG00000001793	-	100	90.612	Scophthalmus_maximus
ENSXMAG00000016090	-	95	88.889	ENSSDUG00000009713	ddx61	97	87.866	Seriola_dumerili
ENSXMAG00000016090	-	100	92.261	ENSSDUG00000007530	-	100	92.261	Seriola_dumerili
ENSXMAG00000016090	-	95	88.699	ENSSLDG00000000132	ddx61	97	87.683	Seriola_lalandi_dorsalis
ENSXMAG00000016090	-	100	92.261	ENSSLDG00000007608	-	100	92.261	Seriola_lalandi_dorsalis
ENSXMAG00000016090	-	100	93.265	ENSSPAG00000013878	-	100	93.265	Stegastes_partitus
ENSXMAG00000016090	-	95	88.248	ENSSPAG00000001578	ddx61	99	86.957	Stegastes_partitus
ENSXMAG00000016090	-	99	86.503	ENSTRUG00000012432	-	99	87.018	Takifugu_rubripes
ENSXMAG00000016090	-	98	88.981	ENSTNIG00000003560	-	100	88.981	Tetraodon_nigroviridis
ENSXMAG00000016090	-	100	100.000	ENSXCOG00000001406	-	100	100.000	Xiphophorus_couchianus