EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000016765 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 13436 bases
Position: chr13:14498026-14511461
Accession: 102218576
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000016799	zf-C2H2	PF00096.26	3.9e-19	1	3
ENSXMAP00000016799	zf-C2H2	PF00096.26	3.9e-19	2	3
ENSXMAP00000016799	zf-C2H2	PF00096.26	3.9e-19	3	3
ENSXMAP00000021358	zf-C2H2	PF00096.26	1.5e-18	1	3
ENSXMAP00000021358	zf-C2H2	PF00096.26	1.5e-18	2	3
ENSXMAP00000021358	zf-C2H2	PF00096.26	1.5e-18	3	3
ENSXMAP00000016799	zf-met	PF12874.7	1.2e-06	1	1
ENSXMAP00000021358	zf-met	PF12874.7	4.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000033365	-	2286	XM_014474238	ENSXMAP00000021358	761 (aa)	XP_014329724	-
ENSXMAT00000016823	-	1815	-	ENSXMAP00000016799	604 (aa)	-	M4AQQ4

Gene Model

Click here to download ENSXMAG00000016765's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000016765's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000016765	prdm1b	92	40.263	ENSAPOG00000014135	-	94	40.263	Acanthochromis_polyacanthus
ENSXMAG00000016765	prdm1b	69	72.182	ENSAPOG00000022084	prdm1b	89	73.223	Acanthochromis_polyacanthus
ENSXMAG00000016765	prdm1b	95	77.265	ENSACIG00000014426	prdm1b	95	77.265	Amphilophus_citrinellus
ENSXMAG00000016765	prdm1b	59	62.500	ENSACIG00000009747	-	91	38.995	Amphilophus_citrinellus
ENSXMAG00000016765	prdm1b	96	71.698	ENSAOCG00000002230	prdm1b	99	71.477	Amphiprion_ocellaris
ENSXMAG00000016765	prdm1b	95	71.972	ENSAPEG00000019826	prdm1b	100	69.577	Amphiprion_percula
ENSXMAG00000016765	prdm1b	95	77.513	ENSATEG00000006924	prdm1b	99	74.057	Anabas_testudineus
ENSXMAG00000016765	prdm1b	94	38.333	ENSATEG00000014034	-	96	38.333	Anabas_testudineus
ENSXMAG00000016765	prdm1b	69	59.722	ENSATEG00000021017	prdm1a	70	55.114	Anabas_testudineus
ENSXMAG00000016765	prdm1b	93	80.702	ENSACLG00000005487	prdm1b	89	80.035	Astatotilapia_calliptera
ENSXMAG00000016765	prdm1b	68	60.000	ENSCSEG00000009707	prdm1a	71	52.542	Cynoglossus_semilaevis
ENSXMAG00000016765	prdm1b	95	80.862	ENSCVAG00000016746	prdm1b	100	77.839	Cyprinodon_variegatus
ENSXMAG00000016765	prdm1b	54	59.722	ENSCVAG00000019081	prdm1a	55	59.722	Cyprinodon_variegatus
ENSXMAG00000016765	prdm1b	96	83.305	ENSFHEG00000019848	prdm1b	94	83.305	Fundulus_heteroclitus
ENSXMAG00000016765	prdm1b	57	67.188	ENSGAFG00000013012	-	53	54.601	Gambusia_affinis
ENSXMAG00000016765	prdm1b	96	93.570	ENSGAFG00000016191	prdm1b	98	93.570	Gambusia_affinis
ENSXMAG00000016765	prdm1b	92	69.421	ENSGACG00000002716	prdm1b	100	68.846	Gasterosteus_aculeatus
ENSXMAG00000016765	prdm1b	97	78.094	ENSHBUG00000001475	prdm1b	97	78.094	Haplochromis_burtoni
ENSXMAG00000016765	prdm1b	95	70.769	ENSHCOG00000003617	prdm1b	99	65.994	Hippocampus_comes
ENSXMAG00000016765	prdm1b	90	57.143	ENSIPUG00000013740	prdm1b	93	56.000	Ictalurus_punctatus
ENSXMAG00000016765	prdm1b	54	59.722	ENSKMAG00000017597	prdm1a	95	41.356	Kryptolebias_marmoratus
ENSXMAG00000016765	prdm1b	93	74.956	ENSKMAG00000011218	prdm1b	91	74.956	Kryptolebias_marmoratus
ENSXMAG00000016765	prdm1b	88	38.861	ENSKMAG00000016247	-	87	40.331	Kryptolebias_marmoratus
ENSXMAG00000016765	prdm1b	97	75.372	ENSLBEG00000020955	prdm1b	100	75.204	Labrus_bergylta
ENSXMAG00000016765	prdm1b	79	74.405	ENSLOCG00000004978	prdm1b	78	74.405	Lepisosteus_oculatus
ENSXMAG00000016765	prdm1b	95	77.568	ENSMZEG00005026361	prdm1b	95	72.841	Maylandia_zebra
ENSXMAG00000016765	prdm1b	97	76.014	ENSMMOG00000013458	prdm1b	98	76.014	Mola_mola
ENSXMAG00000016765	prdm1b	88	40.000	ENSMALG00000000462	-	92	40.000	Monopterus_albus
ENSXMAG00000016765	prdm1b	92	75.614	ENSMALG00000011410	prdm1b	93	75.789	Monopterus_albus
ENSXMAG00000016765	prdm1b	87	84.146	ENSONIG00000013583	prdm1b	83	87.574	Oreochromis_niloticus
ENSXMAG00000016765	prdm1b	96	67.769	ENSORLG00000010025	prdm1b	98	67.769	Oryzias_latipes
ENSXMAG00000016765	prdm1b	94	67.828	ENSORLG00015009022	prdm1b	94	67.828	Oryzias_latipes_hsok
ENSXMAG00000016765	prdm1b	77	73.585	ENSPKIG00000022335	prdm1b	97	50.744	Paramormyrops_kingsleyae
ENSXMAG00000016765	prdm1b	85	85.930	ENSPFOG00000003103	prdm1b	100	85.930	Poecilia_formosa
ENSXMAG00000016765	prdm1b	94	89.292	ENSPLAG00000018491	prdm1b	99	82.669	Poecilia_latipinna
ENSXMAG00000016765	prdm1b	94	89.983	ENSPMEG00000007869	prdm1b	99	83.951	Poecilia_mexicana
ENSXMAG00000016765	prdm1b	96	91.826	ENSPREG00000011327	prdm1b	97	91.826	Poecilia_reticulata
ENSXMAG00000016765	prdm1b	95	39.381	ENSPVAG00000011732	PRDM1	70	57.225	Pteropus_vampyrus
ENSXMAG00000016765	prdm1b	90	41.147	ENSPNAG00000028442	prdm1a	88	43.497	Pygocentrus_nattereri
ENSXMAG00000016765	prdm1b	90	60.182	ENSSFOG00015021896	prdm1b	92	57.080	Scleropages_formosus
ENSXMAG00000016765	prdm1b	95	74.536	ENSSMAG00000020467	prdm1b	100	72.629	Scophthalmus_maximus
ENSXMAG00000016765	prdm1b	55	64.706	ENSSMAG00000017518	-	55	52.907	Scophthalmus_maximus
ENSXMAG00000016765	prdm1b	97	77.167	ENSSDUG00000020610	prdm1b	99	75.039	Seriola_dumerili
ENSXMAG00000016765	prdm1b	54	68.750	ENSSDUG00000000524	-	55	54.494	Seriola_dumerili
ENSXMAG00000016765	prdm1b	54	67.188	ENSSLDG00000001957	-	55	54.307	Seriola_lalandi_dorsalis
ENSXMAG00000016765	prdm1b	97	78.188	ENSSLDG00000021973	prdm1b	100	77.069	Seriola_lalandi_dorsalis
ENSXMAG00000016765	prdm1b	89	40.890	ENSSPAG00000009830	-	91	40.890	Stegastes_partitus
ENSXMAG00000016765	prdm1b	93	79.012	ENSSPAG00000000803	prdm1b	97	77.482	Stegastes_partitus
ENSXMAG00000016765	prdm1b	52	70.000	ENSTNIG00000003926	prdm1a	90	40.496	Tetraodon_nigroviridis
ENSXMAG00000016765	prdm1b	100	99.606	ENSXCOG00000018920	prdm1b	100	99.606	Xiphophorus_couchianus