EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000016861 (Gene tree)
Gene ID: 102220815
Gene Symbol: si:ch211-117n7.8
Alias: -
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 51611 bases
Position: chr22:21130933-21182543
Accession: 102220815
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000016898	S1	PF00575.23	4.6e-12	1	1
ENSXMAP00000034194	S1	PF00575.23	4.6e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000016922	-	3890	XM_005807852	ENSXMAP00000016898	1002 (aa)	XP_005807909	M4AR03
ENSXMAT00000041524	-	3996	XM_023326923	ENSXMAP00000034194	1002 (aa)	XP_023182691	UPI000293AB7C

Gene Model

Click here to download ENSXMAG00000016861's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000016861's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000016861	si:ch211-117n7.8	97	51.160	ENSG00000068784	SRBD1	98	50.844	Homo_sapiens
ENSXMAG00000016861	si:ch211-117n7.8	100	78.452	ENSAPOG00000005103	si:ch211-117n7.8	100	78.452	Acanthochromis_polyacanthus
ENSXMAG00000016861	si:ch211-117n7.8	93	52.746	ENSAMEG00000005993	SRBD1	96	52.746	Ailuropoda_melanoleuca
ENSXMAG00000016861	si:ch211-117n7.8	97	78.969	ENSACIG00000009875	si:ch211-117n7.8	100	79.112	Amphilophus_citrinellus
ENSXMAG00000016861	si:ch211-117n7.8	100	78.193	ENSAOCG00000024718	si:ch211-117n7.8	100	78.193	Amphiprion_ocellaris
ENSXMAG00000016861	si:ch211-117n7.8	97	78.942	ENSAPEG00000002645	si:ch211-117n7.8	99	78.942	Amphiprion_percula
ENSXMAG00000016861	si:ch211-117n7.8	100	77.591	ENSATEG00000010844	si:ch211-117n7.8	100	77.591	Anabas_testudineus
ENSXMAG00000016861	si:ch211-117n7.8	95	53.939	ENSAPLG00000006313	SRBD1	100	52.642	Anas_platyrhynchos
ENSXMAG00000016861	si:ch211-117n7.8	97	51.261	ENSANAG00000025573	SRBD1	98	50.943	Aotus_nancymaae
ENSXMAG00000016861	si:ch211-117n7.8	100	79.610	ENSACLG00000024219	si:ch211-117n7.8	100	79.610	Astatotilapia_calliptera
ENSXMAG00000016861	si:ch211-117n7.8	100	63.056	ENSAMXG00000004294	SRBD1	100	64.195	Astyanax_mexicanus
ENSXMAG00000016861	si:ch211-117n7.8	93	52.474	ENSBTAG00000007508	SRBD1	97	49.850	Bos_taurus
ENSXMAG00000016861	si:ch211-117n7.8	97	51.111	ENSCJAG00000000727	SRBD1	98	50.696	Callithrix_jacchus
ENSXMAG00000016861	si:ch211-117n7.8	88	55.322	ENSCAFG00000002554	SRBD1	88	55.322	Canis_familiaris
ENSXMAG00000016861	si:ch211-117n7.8	85	57.277	ENSCAFG00020026284	SRBD1	99	57.277	Canis_lupus_dingo
ENSXMAG00000016861	si:ch211-117n7.8	93	52.567	ENSCHIG00000016535	SRBD1	97	51.076	Capra_hircus
ENSXMAG00000016861	si:ch211-117n7.8	93	53.553	ENSTSYG00000012797	SRBD1	99	51.346	Carlito_syrichta
ENSXMAG00000016861	si:ch211-117n7.8	93	53.530	ENSCPOG00000004773	SRBD1	95	53.530	Cavia_porcellus
ENSXMAG00000016861	si:ch211-117n7.8	97	51.362	ENSCCAG00000025589	SRBD1	98	51.043	Cebus_capucinus
ENSXMAG00000016861	si:ch211-117n7.8	97	51.564	ENSCATG00000039530	SRBD1	98	51.241	Cercocebus_atys
ENSXMAG00000016861	si:ch211-117n7.8	93	54.119	ENSCLAG00000008623	SRBD1	96	54.119	Chinchilla_lanigera
ENSXMAG00000016861	si:ch211-117n7.8	97	51.717	ENSCSAG00000013350	SRBD1	98	51.392	Chlorocebus_sabaeus
ENSXMAG00000016861	si:ch211-117n7.8	71	79.070	ENSCHOG00000003805	SRBD1	69	79.070	Choloepus_hoffmanni
ENSXMAG00000016861	si:ch211-117n7.8	97	52.048	ENSCPBG00000005677	SRBD1	100	52.330	Chrysemys_picta_bellii
ENSXMAG00000016861	si:ch211-117n7.8	78	40.075	ENSCING00000005950	-	99	40.075	Ciona_intestinalis
ENSXMAG00000016861	si:ch211-117n7.8	78	42.532	ENSCSAVG00000000861	-	99	42.532	Ciona_savignyi
ENSXMAG00000016861	si:ch211-117n7.8	97	51.313	ENSCANG00000016307	SRBD1	98	50.895	Colobus_angolensis_palliatus
ENSXMAG00000016861	si:ch211-117n7.8	99	51.032	ENSCGRG00001000513	Srbd1	99	51.032	Cricetulus_griseus_chok1gshd
ENSXMAG00000016861	si:ch211-117n7.8	99	51.032	ENSCGRG00000002283	Srbd1	99	51.032	Cricetulus_griseus_crigri
ENSXMAG00000016861	si:ch211-117n7.8	100	71.105	ENSCSEG00000000856	si:ch211-117n7.8	100	71.302	Cynoglossus_semilaevis
ENSXMAG00000016861	si:ch211-117n7.8	98	81.939	ENSCVAG00000020212	si:ch211-117n7.8	99	81.939	Cyprinodon_variegatus
ENSXMAG00000016861	si:ch211-117n7.8	83	55.986	ENSDNOG00000018686	SRBD1	83	55.986	Dasypus_novemcinctus
ENSXMAG00000016861	si:ch211-117n7.8	84	56.941	ENSDORG00000010468	Srbd1	84	56.941	Dipodomys_ordii
ENSXMAG00000016861	si:ch211-117n7.8	99	32.287	FBgn0051156	CG31156	79	35.975	Drosophila_melanogaster
ENSXMAG00000016861	si:ch211-117n7.8	73	58.212	ENSETEG00000000739	SRBD1	77	58.076	Echinops_telfairi
ENSXMAG00000016861	si:ch211-117n7.8	72	48.623	ENSEBUG00000008902	si:ch211-117n7.8	95	48.623	Eptatretus_burgeri
ENSXMAG00000016861	si:ch211-117n7.8	93	50.823	ENSEASG00005003132	SRBD1	98	55.894	Equus_asinus_asinus
ENSXMAG00000016861	si:ch211-117n7.8	93	52.778	ENSECAG00000013865	SRBD1	97	51.131	Equus_caballus
ENSXMAG00000016861	si:ch211-117n7.8	100	64.639	ENSELUG00000012592	si:ch211-117n7.8	100	64.599	Esox_lucius
ENSXMAG00000016861	si:ch211-117n7.8	93	52.572	ENSFCAG00000005101	SRBD1	98	51.234	Felis_catus
ENSXMAG00000016861	si:ch211-117n7.8	84	57.870	ENSFALG00000012966	SRBD1	97	53.673	Ficedula_albicollis
ENSXMAG00000016861	si:ch211-117n7.8	97	51.923	ENSFDAG00000016670	SRBD1	99	51.923	Fukomys_damarensis
ENSXMAG00000016861	si:ch211-117n7.8	100	85.000	ENSFHEG00000019480	si:ch211-117n7.8	100	85.000	Fundulus_heteroclitus
ENSXMAG00000016861	si:ch211-117n7.8	50	71.631	ENSGMOG00000018010	-	100	71.631	Gadus_morhua
ENSXMAG00000016861	si:ch211-117n7.8	83	59.788	ENSGALG00000009990	SRBD1	98	54.283	Gallus_gallus
ENSXMAG00000016861	si:ch211-117n7.8	100	96.707	ENSGAFG00000019664	si:ch211-117n7.8	100	96.707	Gambusia_affinis
ENSXMAG00000016861	si:ch211-117n7.8	62	81.153	ENSGACG00000010794	si:ch211-117n7.8	100	81.153	Gasterosteus_aculeatus
ENSXMAG00000016861	si:ch211-117n7.8	83	58.657	ENSGAGG00000006166	SRBD1	99	58.657	Gopherus_agassizii
ENSXMAG00000016861	si:ch211-117n7.8	97	51.414	ENSGGOG00000005910	SRBD1	99	51.414	Gorilla_gorilla
ENSXMAG00000016861	si:ch211-117n7.8	97	67.378	ENSHBUG00000013207	si:ch211-117n7.8	100	67.581	Haplochromis_burtoni
ENSXMAG00000016861	si:ch211-117n7.8	98	51.351	ENSHGLG00000018153	-	98	51.351	Heterocephalus_glaber_female
ENSXMAG00000016861	si:ch211-117n7.8	98	51.351	ENSHGLG00100015183	-	98	51.351	Heterocephalus_glaber_male
ENSXMAG00000016861	si:ch211-117n7.8	100	63.148	ENSIPUG00000009661	srbd1	100	64.377	Ictalurus_punctatus
ENSXMAG00000016861	si:ch211-117n7.8	98	52.800	ENSSTOG00000005898	SRBD1	98	52.800	Ictidomys_tridecemlineatus
ENSXMAG00000016861	si:ch211-117n7.8	98	49.850	ENSJJAG00000022244	Srbd1	98	49.850	Jaculus_jaculus
ENSXMAG00000016861	si:ch211-117n7.8	99	82.143	ENSKMAG00000003473	si:ch211-117n7.8	100	82.143	Kryptolebias_marmoratus
ENSXMAG00000016861	si:ch211-117n7.8	100	77.233	ENSLBEG00000027518	si:ch211-117n7.8	100	77.233	Labrus_bergylta
ENSXMAG00000016861	si:ch211-117n7.8	84	58.665	ENSLACG00000009790	SRBD1	99	58.665	Latimeria_chalumnae
ENSXMAG00000016861	si:ch211-117n7.8	96	61.446	ENSLOCG00000016360	si:ch211-117n7.8	99	60.742	Lepisosteus_oculatus
ENSXMAG00000016861	si:ch211-117n7.8	97	51.414	ENSMFAG00000042026	SRBD1	98	51.093	Macaca_fascicularis
ENSXMAG00000016861	si:ch211-117n7.8	88	54.889	ENSMMUG00000003490	SRBD1	98	51.093	Macaca_mulatta
ENSXMAG00000016861	si:ch211-117n7.8	97	49.899	ENSMNEG00000034701	SRBD1	98	49.602	Macaca_nemestrina
ENSXMAG00000016861	si:ch211-117n7.8	97	51.613	ENSMLEG00000000745	SRBD1	98	51.290	Mandrillus_leucophaeus
ENSXMAG00000016861	si:ch211-117n7.8	100	76.256	ENSMAMG00000021921	si:ch211-117n7.8	100	76.946	Mastacembelus_armatus
ENSXMAG00000016861	si:ch211-117n7.8	100	79.512	ENSMZEG00005027369	si:ch211-117n7.8	100	79.707	Maylandia_zebra
ENSXMAG00000016861	si:ch211-117n7.8	79	56.740	ENSMGAG00000010273	SRBD1	100	56.740	Meleagris_gallopavo
ENSXMAG00000016861	si:ch211-117n7.8	78	55.961	ENSMAUG00000013916	Srbd1	95	55.961	Mesocricetus_auratus
ENSXMAG00000016861	si:ch211-117n7.8	97	52.004	ENSMICG00000007835	SRBD1	99	51.113	Microcebus_murinus
ENSXMAG00000016861	si:ch211-117n7.8	99	51.137	ENSMOCG00000018716	Srbd1	99	51.137	Microtus_ochrogaster
ENSXMAG00000016861	si:ch211-117n7.8	97	75.051	ENSMMOG00000007507	si:ch211-117n7.8	100	75.051	Mola_mola
ENSXMAG00000016861	si:ch211-117n7.8	100	76.078	ENSMALG00000001562	si:ch211-117n7.8	100	76.176	Monopterus_albus
ENSXMAG00000016861	si:ch211-117n7.8	84	57.109	MGP_CAROLIEiJ_G0021934	Srbd1	99	59.283	Mus_caroli
ENSXMAG00000016861	si:ch211-117n7.8	89	55.127	ENSMUSG00000024135	Srbd1	99	56.631	Mus_musculus
ENSXMAG00000016861	si:ch211-117n7.8	89	54.796	MGP_PahariEiJ_G0020924	Srbd1	90	54.796	Mus_pahari
ENSXMAG00000016861	si:ch211-117n7.8	84	57.109	MGP_SPRETEiJ_G0022850	Srbd1	85	57.109	Mus_spretus
ENSXMAG00000016861	si:ch211-117n7.8	93	53.402	ENSMLUG00000007039	SRBD1	98	51.465	Myotis_lucifugus
ENSXMAG00000016861	si:ch211-117n7.8	98	49.707	ENSNGAG00000011893	Srbd1	99	49.707	Nannospalax_galili
ENSXMAG00000016861	si:ch211-117n7.8	98	76.133	ENSNBRG00000012873	si:ch211-117n7.8	100	76.334	Neolamprologus_brichardi
ENSXMAG00000016861	si:ch211-117n7.8	97	51.060	ENSNLEG00000016877	SRBD1	98	50.745	Nomascus_leucogenys
ENSXMAG00000016861	si:ch211-117n7.8	92	52.910	ENSODEG00000012095	SRBD1	96	52.910	Octodon_degus
ENSXMAG00000016861	si:ch211-117n7.8	100	79.610	ENSONIG00000000945	si:ch211-117n7.8	100	84.706	Oreochromis_niloticus
ENSXMAG00000016861	si:ch211-117n7.8	93	53.320	ENSOCUG00000015385	SRBD1	95	53.631	Oryctolagus_cuniculus
ENSXMAG00000016861	si:ch211-117n7.8	100	72.407	ENSORLG00000004427	si:ch211-117n7.8	100	72.407	Oryzias_latipes
ENSXMAG00000016861	si:ch211-117n7.8	100	74.951	ENSORLG00020012792	si:ch211-117n7.8	100	75.758	Oryzias_latipes_hni
ENSXMAG00000016861	si:ch211-117n7.8	100	75.538	ENSORLG00015018598	si:ch211-117n7.8	100	75.538	Oryzias_latipes_hsok
ENSXMAG00000016861	si:ch211-117n7.8	99	74.877	ENSOMEG00000012229	si:ch211-117n7.8	99	79.167	Oryzias_melastigma
ENSXMAG00000016861	si:ch211-117n7.8	83	55.241	ENSOGAG00000001076	SRBD1	84	55.241	Otolemur_garnettii
ENSXMAG00000016861	si:ch211-117n7.8	93	49.353	ENSOARG00000005958	SRBD1	98	48.053	Ovis_aries
ENSXMAG00000016861	si:ch211-117n7.8	83	56.486	ENSPPAG00000038442	SRBD1	98	50.645	Pan_paniscus
ENSXMAG00000016861	si:ch211-117n7.8	88	54.746	ENSPPRG00000003449	SRBD1	98	51.186	Panthera_pardus
ENSXMAG00000016861	si:ch211-117n7.8	88	54.746	ENSPTIG00000012495	SRBD1	98	51.186	Panthera_tigris_altaica
ENSXMAG00000016861	si:ch211-117n7.8	83	56.722	ENSPTRG00000011889	SRBD1	98	50.844	Pan_troglodytes
ENSXMAG00000016861	si:ch211-117n7.8	97	51.210	ENSPANG00000008063	SRBD1	98	50.893	Papio_anubis
ENSXMAG00000016861	si:ch211-117n7.8	94	63.788	ENSPKIG00000021973	si:ch211-117n7.8	99	61.111	Paramormyrops_kingsleyae
ENSXMAG00000016861	si:ch211-117n7.8	83	57.193	ENSPSIG00000008992	SRBD1	98	51.236	Pelodiscus_sinensis
ENSXMAG00000016861	si:ch211-117n7.8	85	79.181	ENSPMGG00000013348	si:ch211-117n7.8	99	72.838	Periophthalmus_magnuspinnatus
ENSXMAG00000016861	si:ch211-117n7.8	98	50.195	ENSPEMG00000020684	Srbd1	99	50.195	Peromyscus_maniculatus_bairdii
ENSXMAG00000016861	si:ch211-117n7.8	100	95.010	ENSPFOG00000010650	si:ch211-117n7.8	100	95.010	Poecilia_formosa
ENSXMAG00000016861	si:ch211-117n7.8	100	95.010	ENSPLAG00000002141	si:ch211-117n7.8	100	95.010	Poecilia_latipinna
ENSXMAG00000016861	si:ch211-117n7.8	100	95.210	ENSPMEG00000018537	si:ch211-117n7.8	100	95.210	Poecilia_mexicana
ENSXMAG00000016861	si:ch211-117n7.8	100	90.963	ENSPREG00000003258	si:ch211-117n7.8	100	90.963	Poecilia_reticulata
ENSXMAG00000016861	si:ch211-117n7.8	88	50.938	ENSPPYG00000012444	SRBD1	97	47.610	Pongo_abelii
ENSXMAG00000016861	si:ch211-117n7.8	75	51.974	ENSPCAG00000005629	SRBD1	80	51.974	Procavia_capensis
ENSXMAG00000016861	si:ch211-117n7.8	97	43.756	ENSPCOG00000017669	SRBD1	99	43.147	Propithecus_coquereli
ENSXMAG00000016861	si:ch211-117n7.8	83	50.648	ENSPVAG00000001782	SRBD1	98	45.391	Pteropus_vampyrus
ENSXMAG00000016861	si:ch211-117n7.8	97	74.134	ENSPNYG00000000508	si:ch211-117n7.8	100	74.338	Pundamilia_nyererei
ENSXMAG00000016861	si:ch211-117n7.8	94	67.644	ENSPNAG00000013492	SRBD1	99	65.507	Pygocentrus_nattereri
ENSXMAG00000016861	si:ch211-117n7.8	84	56.066	ENSRNOG00000014720	Srbd1	84	56.155	Rattus_norvegicus
ENSXMAG00000016861	si:ch211-117n7.8	97	51.212	ENSRBIG00000033486	SRBD1	98	50.795	Rhinopithecus_bieti
ENSXMAG00000016861	si:ch211-117n7.8	97	51.212	ENSRROG00000041599	SRBD1	98	50.795	Rhinopithecus_roxellana
ENSXMAG00000016861	si:ch211-117n7.8	97	51.212	ENSSBOG00000024982	SRBD1	98	51.246	Saimiri_boliviensis_boliviensis
ENSXMAG00000016861	si:ch211-117n7.8	86	66.897	ENSSFOG00015001128	si:ch211-117n7.8	94	66.897	Scleropages_formosus
ENSXMAG00000016861	si:ch211-117n7.8	100	76.706	ENSSMAG00000018256	si:ch211-117n7.8	100	76.706	Scophthalmus_maximus
ENSXMAG00000016861	si:ch211-117n7.8	93	79.543	ENSSLDG00000023189	si:ch211-117n7.8	99	78.020	Seriola_lalandi_dorsalis
ENSXMAG00000016861	si:ch211-117n7.8	83	53.073	ENSSARG00000009740	SRBD1	85	53.191	Sorex_araneus
ENSXMAG00000016861	si:ch211-117n7.8	85	58.596	ENSSPUG00000010475	SRBD1	94	58.596	Sphenodon_punctatus
ENSXMAG00000016861	si:ch211-117n7.8	97	75.050	ENSSPAG00000008092	-	100	75.050	Stegastes_partitus
ENSXMAG00000016861	si:ch211-117n7.8	97	51.460	ENSSSCG00000008445	SRBD1	97	51.045	Sus_scrofa
ENSXMAG00000016861	si:ch211-117n7.8	83	58.373	ENSTGUG00000003878	SRBD1	100	58.373	Taeniopygia_guttata
ENSXMAG00000016861	si:ch211-117n7.8	99	73.756	ENSTRUG00000007080	si:ch211-117n7.8	99	78.924	Takifugu_rubripes
ENSXMAG00000016861	si:ch211-117n7.8	98	72.871	ENSTNIG00000007464	si:ch211-117n7.8	98	72.871	Tetraodon_nigroviridis
ENSXMAG00000016861	si:ch211-117n7.8	64	80.851	ENSTBEG00000004556	SRBD1	69	80.851	Tupaia_belangeri
ENSXMAG00000016861	si:ch211-117n7.8	76	57.968	ENSTTRG00000011871	SRBD1	90	56.771	Tursiops_truncatus
ENSXMAG00000016861	si:ch211-117n7.8	83	57.008	ENSUAMG00000008126	SRBD1	97	54.710	Ursus_americanus
ENSXMAG00000016861	si:ch211-117n7.8	83	57.008	ENSUMAG00000012902	SRBD1	83	57.008	Ursus_maritimus
ENSXMAG00000016861	si:ch211-117n7.8	83	56.604	ENSVPAG00000006825	SRBD1	92	56.604	Vicugna_pacos
ENSXMAG00000016861	si:ch211-117n7.8	93	53.679	ENSVVUG00000005389	SRBD1	98	51.443	Vulpes_vulpes
ENSXMAG00000016861	si:ch211-117n7.8	98	45.977	ENSXETG00000002760	srbd1	98	45.977	Xenopus_tropicalis