EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000017048 (Gene tree)
Gene ID: 102238047
Gene Symbol: cpsf2
Alias: zgc:92484
Full Name: cleavage and polyadenylation specific factor 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 10071 bases
Position: chr15:7077377-7087447
Accession: 102238047
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000017128	Beta-Casp	PF10996.8	3.4e-21	1	1
ENSXMAP00000017128	Lactamase_B	PF00753.27	4.1e-05	1	1
ENSXMAP00000017128	RMMBL	PF07521.12	2.5e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000017152	-	3771	XM_005803104	ENSXMAP00000017128	787 (aa)	XP_005803161	M4ARN3

Gene Model

Click here to download ENSXMAG00000017048's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000017048's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000017048	cpsf2	100	85.805	ENSG00000165934	CPSF2	100	87.500	Homo_sapiens
ENSXMAG00000017048	cpsf2	100	95.426	ENSAPOG00000001242	cpsf2	100	95.426	Acanthochromis_polyacanthus
ENSXMAG00000017048	cpsf2	100	95.178	ENSACIG00000009331	cpsf2	100	95.178	Amphilophus_citrinellus
ENSXMAG00000017048	cpsf2	100	96.188	ENSAOCG00000014095	cpsf2	100	96.188	Amphiprion_ocellaris
ENSXMAG00000017048	cpsf2	100	96.188	ENSAPEG00000009158	cpsf2	100	96.188	Amphiprion_percula
ENSXMAG00000017048	cpsf2	97	94.010	ENSATEG00000017644	cpsf2	99	93.960	Anabas_testudineus
ENSXMAG00000017048	cpsf2	100	85.570	ENSAPLG00000006330	CPSF2	100	85.570	Anas_platyrhynchos
ENSXMAG00000017048	cpsf2	100	85.171	ENSACAG00000009245	CPSF2	100	85.171	Anolis_carolinensis
ENSXMAG00000017048	cpsf2	100	86.058	ENSANAG00000022915	CPSF2	100	86.058	Aotus_nancymaae
ENSXMAG00000017048	cpsf2	100	89.734	ENSAMXG00000018696	cpsf2	100	89.734	Astyanax_mexicanus
ENSXMAG00000017048	cpsf2	100	85.932	ENSBTAG00000010227	CPSF2	100	85.932	Bos_taurus
ENSXMAG00000017048	cpsf2	100	42.173	WBGene00017313	cpsf-2	100	41.939	Caenorhabditis_elegans
ENSXMAG00000017048	cpsf2	100	86.058	ENSCJAG00000018069	CPSF2	100	86.058	Callithrix_jacchus
ENSXMAG00000017048	cpsf2	100	85.805	ENSCAFG00000010909	CPSF2	100	85.805	Canis_familiaris
ENSXMAG00000017048	cpsf2	100	85.805	ENSCAFG00020020670	CPSF2	100	85.805	Canis_lupus_dingo
ENSXMAG00000017048	cpsf2	100	85.932	ENSCHIG00000023848	CPSF2	100	85.932	Capra_hircus
ENSXMAG00000017048	cpsf2	100	86.058	ENSTSYG00000009036	CPSF2	100	86.058	Carlito_syrichta
ENSXMAG00000017048	cpsf2	100	85.932	ENSCPOG00000010899	CPSF2	100	85.932	Cavia_porcellus
ENSXMAG00000017048	cpsf2	100	86.058	ENSCCAG00000028088	CPSF2	100	86.058	Cebus_capucinus
ENSXMAG00000017048	cpsf2	100	85.932	ENSCATG00000030132	CPSF2	100	85.932	Cercocebus_atys
ENSXMAG00000017048	cpsf2	100	86.058	ENSCLAG00000012404	CPSF2	100	86.058	Chinchilla_lanigera
ENSXMAG00000017048	cpsf2	100	85.932	ENSCSAG00000011300	CPSF2	100	85.932	Chlorocebus_sabaeus
ENSXMAG00000017048	cpsf2	100	80.355	ENSCHOG00000012904	CPSF2	100	80.355	Choloepus_hoffmanni
ENSXMAG00000017048	cpsf2	100	85.678	ENSCPBG00000008766	CPSF2	97	85.678	Chrysemys_picta_bellii
ENSXMAG00000017048	cpsf2	100	53.109	ENSCING00000007881	-	100	52.912	Ciona_intestinalis
ENSXMAG00000017048	cpsf2	94	85.946	ENSCANG00000041651	CPSF2	100	85.927	Colobus_angolensis_palliatus
ENSXMAG00000017048	cpsf2	100	85.298	ENSCGRG00001006901	Cpsf2	100	85.298	Cricetulus_griseus_chok1gshd
ENSXMAG00000017048	cpsf2	100	85.298	ENSCGRG00000012416	Cpsf2	100	85.298	Cricetulus_griseus_crigri
ENSXMAG00000017048	cpsf2	100	93.401	ENSCSEG00000004116	cpsf2	100	93.401	Cynoglossus_semilaevis
ENSXMAG00000017048	cpsf2	100	98.475	ENSCVAG00000000095	cpsf2	100	98.475	Cyprinodon_variegatus
ENSXMAG00000017048	cpsf2	100	88.101	ENSDARG00000028971	cpsf2	100	88.101	Danio_rerio
ENSXMAG00000017048	cpsf2	100	85.932	ENSDNOG00000042757	CPSF2	100	85.932	Dasypus_novemcinctus
ENSXMAG00000017048	cpsf2	100	85.932	ENSDORG00000013709	Cpsf2	100	85.932	Dipodomys_ordii
ENSXMAG00000017048	cpsf2	100	53.770	FBgn0027873	Cpsf100	100	53.656	Drosophila_melanogaster
ENSXMAG00000017048	cpsf2	100	78.101	ENSETEG00000012123	CPSF2	100	78.101	Echinops_telfairi
ENSXMAG00000017048	cpsf2	52	76.039	ENSEBUG00000012098	cpsf2	93	76.039	Eptatretus_burgeri
ENSXMAG00000017048	cpsf2	89	90.102	ENSEASG00005021193	CPSF2	100	90.102	Equus_asinus_asinus
ENSXMAG00000017048	cpsf2	100	85.805	ENSECAG00000023935	CPSF2	100	85.805	Equus_caballus
ENSXMAG00000017048	cpsf2	100	88.945	ENSELUG00000008442	cpsf2	100	88.945	Esox_lucius
ENSXMAG00000017048	cpsf2	100	85.805	ENSFCAG00000007886	CPSF2	100	85.805	Felis_catus
ENSXMAG00000017048	cpsf2	100	85.660	ENSFALG00000002412	CPSF2	100	85.660	Ficedula_albicollis
ENSXMAG00000017048	cpsf2	100	85.805	ENSFDAG00000006327	CPSF2	100	85.805	Fukomys_damarensis
ENSXMAG00000017048	cpsf2	96	96.859	ENSFHEG00000015465	cpsf2	98	96.859	Fundulus_heteroclitus
ENSXMAG00000017048	cpsf2	100	89.899	ENSGMOG00000008761	cpsf2	100	89.899	Gadus_morhua
ENSXMAG00000017048	cpsf2	100	85.914	ENSGALG00000010783	CPSF2	100	85.914	Gallus_gallus
ENSXMAG00000017048	cpsf2	100	99.492	ENSGAFG00000001407	cpsf2	100	99.492	Gambusia_affinis
ENSXMAG00000017048	cpsf2	100	94.663	ENSGACG00000008418	cpsf2	100	94.663	Gasterosteus_aculeatus
ENSXMAG00000017048	cpsf2	100	85.551	ENSGAGG00000008287	CPSF2	100	85.551	Gopherus_agassizii
ENSXMAG00000017048	cpsf2	100	85.805	ENSGGOG00000011799	CPSF2	100	85.805	Gorilla_gorilla
ENSXMAG00000017048	cpsf2	100	93.774	ENSHBUG00000023466	cpsf2	100	93.774	Haplochromis_burtoni
ENSXMAG00000017048	cpsf2	100	85.932	ENSHGLG00000018311	CPSF2	100	85.932	Heterocephalus_glaber_female
ENSXMAG00000017048	cpsf2	100	85.932	ENSHGLG00100016460	CPSF2	100	85.932	Heterocephalus_glaber_male
ENSXMAG00000017048	cpsf2	100	93.393	ENSHCOG00000019527	cpsf2	98	93.393	Hippocampus_comes
ENSXMAG00000017048	cpsf2	100	89.734	ENSIPUG00000020857	cpsf2	100	89.734	Ictalurus_punctatus
ENSXMAG00000017048	cpsf2	100	86.058	ENSSTOG00000009528	CPSF2	100	86.058	Ictidomys_tridecemlineatus
ENSXMAG00000017048	cpsf2	100	85.678	ENSJJAG00000017925	Cpsf2	100	85.678	Jaculus_jaculus
ENSXMAG00000017048	cpsf2	100	95.299	ENSKMAG00000019429	cpsf2	100	95.299	Kryptolebias_marmoratus
ENSXMAG00000017048	cpsf2	95	93.700	ENSLBEG00000011585	cpsf2	100	93.700	Labrus_bergylta
ENSXMAG00000017048	cpsf2	100	83.756	ENSLACG00000019024	CPSF2	100	84.030	Latimeria_chalumnae
ENSXMAG00000017048	cpsf2	100	88.608	ENSLOCG00000014102	cpsf2	100	88.608	Lepisosteus_oculatus
ENSXMAG00000017048	cpsf2	100	85.335	ENSLAFG00000004891	CPSF2	100	85.335	Loxodonta_africana
ENSXMAG00000017048	cpsf2	100	85.932	ENSMFAG00000041212	CPSF2	100	85.932	Macaca_fascicularis
ENSXMAG00000017048	cpsf2	100	85.932	ENSMMUG00000000699	CPSF2	100	85.932	Macaca_mulatta
ENSXMAG00000017048	cpsf2	100	85.932	ENSMNEG00000031584	CPSF2	100	85.932	Macaca_nemestrina
ENSXMAG00000017048	cpsf2	100	85.932	ENSMLEG00000029394	CPSF2	100	85.932	Mandrillus_leucophaeus
ENSXMAG00000017048	cpsf2	100	95.680	ENSMAMG00000004235	cpsf2	100	95.680	Mastacembelus_armatus
ENSXMAG00000017048	cpsf2	100	93.901	ENSMZEG00005001769	cpsf2	100	93.901	Maylandia_zebra
ENSXMAG00000017048	cpsf2	100	85.678	ENSMGAG00000013122	CPSF2	100	85.678	Meleagris_gallopavo
ENSXMAG00000017048	cpsf2	100	85.298	ENSMAUG00000015160	Cpsf2	100	85.298	Mesocricetus_auratus
ENSXMAG00000017048	cpsf2	100	85.932	ENSMICG00000016441	CPSF2	100	85.932	Microcebus_murinus
ENSXMAG00000017048	cpsf2	100	85.298	ENSMOCG00000015372	Cpsf2	100	85.298	Microtus_ochrogaster
ENSXMAG00000017048	cpsf2	100	88.818	ENSMMOG00000015590	cpsf2	100	88.818	Mola_mola
ENSXMAG00000017048	cpsf2	100	85.932	ENSMODG00000002042	CPSF2	100	85.932	Monodelphis_domestica
ENSXMAG00000017048	cpsf2	100	91.741	ENSMALG00000022275	cpsf2	100	91.741	Monopterus_albus
ENSXMAG00000017048	cpsf2	100	85.551	ENSMUSG00000041781	Cpsf2	100	85.551	Mus_musculus
ENSXMAG00000017048	cpsf2	100	85.425	MGP_PahariEiJ_G0029791	Cpsf2	100	85.425	Mus_pahari
ENSXMAG00000017048	cpsf2	100	85.551	MGP_SPRETEiJ_G0018877	Cpsf2	100	85.551	Mus_spretus
ENSXMAG00000017048	cpsf2	100	85.932	ENSMPUG00000007617	CPSF2	98	85.932	Mustela_putorius_furo
ENSXMAG00000017048	cpsf2	100	85.425	ENSMLUG00000005570	CPSF2	100	85.425	Myotis_lucifugus
ENSXMAG00000017048	cpsf2	100	85.678	ENSNGAG00000020312	Cpsf2	100	85.678	Nannospalax_galili
ENSXMAG00000017048	cpsf2	100	94.282	ENSNBRG00000022402	cpsf2	100	94.282	Neolamprologus_brichardi
ENSXMAG00000017048	cpsf2	100	85.298	ENSNLEG00000017132	CPSF2	100	85.298	Nomascus_leucogenys
ENSXMAG00000017048	cpsf2	91	92.880	ENSMEUG00000008138	CPSF2	91	92.880	Notamacropus_eugenii
ENSXMAG00000017048	cpsf2	94	81.436	ENSOPRG00000008484	-	100	81.436	Ochotona_princeps
ENSXMAG00000017048	cpsf2	100	85.678	ENSODEG00000008682	CPSF2	100	85.678	Octodon_degus
ENSXMAG00000017048	cpsf2	100	94.028	ENSONIG00000005901	cpsf2	100	94.028	Oreochromis_niloticus
ENSXMAG00000017048	cpsf2	100	85.551	ENSOANG00000003822	CPSF2	100	85.551	Ornithorhynchus_anatinus
ENSXMAG00000017048	cpsf2	100	85.678	ENSOCUG00000005713	CPSF2	100	85.678	Oryctolagus_cuniculus
ENSXMAG00000017048	cpsf2	100	88.818	ENSORLG00000011628	cpsf2	100	88.818	Oryzias_latipes
ENSXMAG00000017048	cpsf2	100	94.663	ENSORLG00020016980	cpsf2	100	94.663	Oryzias_latipes_hni
ENSXMAG00000017048	cpsf2	100	94.663	ENSORLG00015011910	cpsf2	100	94.663	Oryzias_latipes_hsok
ENSXMAG00000017048	cpsf2	100	94.924	ENSOMEG00000022876	cpsf2	100	94.924	Oryzias_melastigma
ENSXMAG00000017048	cpsf2	100	82.933	ENSOARG00000012889	CPSF2	100	82.933	Ovis_aries
ENSXMAG00000017048	cpsf2	100	85.805	ENSPPAG00000039666	CPSF2	100	85.805	Pan_paniscus
ENSXMAG00000017048	cpsf2	99	85.787	ENSPPRG00000010869	CPSF2	100	85.787	Panthera_pardus
ENSXMAG00000017048	cpsf2	100	85.805	ENSPTIG00000021202	CPSF2	100	85.805	Panthera_tigris_altaica
ENSXMAG00000017048	cpsf2	100	85.805	ENSPTRG00000006651	CPSF2	100	85.805	Pan_troglodytes
ENSXMAG00000017048	cpsf2	100	85.932	ENSPANG00000017417	CPSF2	100	85.932	Papio_anubis
ENSXMAG00000017048	cpsf2	100	85.298	ENSPKIG00000021453	cpsf2	100	85.298	Paramormyrops_kingsleyae
ENSXMAG00000017048	cpsf2	100	85.044	ENSPSIG00000006289	CPSF2	100	85.044	Pelodiscus_sinensis
ENSXMAG00000017048	cpsf2	76	87.022	ENSPMGG00000002511	cpsf2	99	88.167	Periophthalmus_magnuspinnatus
ENSXMAG00000017048	cpsf2	100	85.678	ENSPEMG00000007917	Cpsf2	100	85.678	Peromyscus_maniculatus_bairdii
ENSXMAG00000017048	cpsf2	100	72.647	ENSPMAG00000006205	cpsf2	100	73.034	Petromyzon_marinus
ENSXMAG00000017048	cpsf2	100	85.932	ENSPCIG00000011393	CPSF2	100	85.932	Phascolarctos_cinereus
ENSXMAG00000017048	cpsf2	100	99.238	ENSPFOG00000018648	cpsf2	100	99.238	Poecilia_formosa
ENSXMAG00000017048	cpsf2	100	99.238	ENSPLAG00000019199	cpsf2	99	99.238	Poecilia_latipinna
ENSXMAG00000017048	cpsf2	96	99.339	ENSPMEG00000012100	cpsf2	100	99.196	Poecilia_mexicana
ENSXMAG00000017048	cpsf2	100	98.729	ENSPREG00000008960	cpsf2	100	98.729	Poecilia_reticulata
ENSXMAG00000017048	cpsf2	64	82.107	ENSPPYG00000029685	-	100	82.107	Pongo_abelii
ENSXMAG00000017048	cpsf2	100	85.425	ENSPCAG00000012477	CPSF2	100	85.425	Procavia_capensis
ENSXMAG00000017048	cpsf2	100	86.058	ENSPCOG00000026387	CPSF2	100	86.058	Propithecus_coquereli
ENSXMAG00000017048	cpsf2	64	90.816	ENSPVAG00000004223	CPSF2	65	90.816	Pteropus_vampyrus
ENSXMAG00000017048	cpsf2	100	93.528	ENSPNYG00000023356	cpsf2	100	93.528	Pundamilia_nyererei
ENSXMAG00000017048	cpsf2	100	90.621	ENSPNAG00000001849	cpsf2	100	90.621	Pygocentrus_nattereri
ENSXMAG00000017048	cpsf2	100	85.678	ENSRNOG00000005733	Cpsf2	100	85.678	Rattus_norvegicus
ENSXMAG00000017048	cpsf2	100	85.932	ENSRBIG00000044792	CPSF2	100	85.932	Rhinopithecus_bieti
ENSXMAG00000017048	cpsf2	100	85.932	ENSRROG00000034875	CPSF2	100	85.932	Rhinopithecus_roxellana
ENSXMAG00000017048	cpsf2	100	86.058	ENSSBOG00000024571	CPSF2	100	86.058	Saimiri_boliviensis_boliviensis
ENSXMAG00000017048	cpsf2	100	86.058	ENSSHAG00000010458	CPSF2	100	86.058	Sarcophilus_harrisii
ENSXMAG00000017048	cpsf2	100	90.748	ENSSFOG00015002117	cpsf2	100	90.875	Scleropages_formosus
ENSXMAG00000017048	cpsf2	100	93.528	ENSSMAG00000002001	cpsf2	100	94.416	Scophthalmus_maximus
ENSXMAG00000017048	cpsf2	100	95.807	ENSSDUG00000004084	cpsf2	100	95.807	Seriola_dumerili
ENSXMAG00000017048	cpsf2	100	95.426	ENSSLDG00000024330	cpsf2	100	95.426	Seriola_lalandi_dorsalis
ENSXMAG00000017048	cpsf2	58	93.069	ENSSARG00000009784	-	63	93.069	Sorex_araneus
ENSXMAG00000017048	cpsf2	100	85.551	ENSSPUG00000013485	CPSF2	100	85.551	Sphenodon_punctatus
ENSXMAG00000017048	cpsf2	100	95.299	ENSSPAG00000013284	cpsf2	100	95.299	Stegastes_partitus
ENSXMAG00000017048	cpsf2	100	85.678	ENSSSCG00000002447	CPSF2	100	85.678	Sus_scrofa
ENSXMAG00000017048	cpsf2	100	85.787	ENSTGUG00000012571	-	100	85.787	Taeniopygia_guttata
ENSXMAG00000017048	cpsf2	100	92.757	ENSTRUG00000003742	cpsf2	100	92.757	Takifugu_rubripes
ENSXMAG00000017048	cpsf2	100	91.508	ENSTNIG00000012228	cpsf2	100	92.522	Tetraodon_nigroviridis
ENSXMAG00000017048	cpsf2	91	83.913	ENSTBEG00000004530	CPSF2	94	83.913	Tupaia_belangeri
ENSXMAG00000017048	cpsf2	88	87.500	ENSTTRG00000008697	CPSF2	88	87.500	Tursiops_truncatus
ENSXMAG00000017048	cpsf2	100	85.932	ENSUAMG00000028071	CPSF2	100	85.932	Ursus_americanus
ENSXMAG00000017048	cpsf2	100	85.932	ENSUMAG00000005029	CPSF2	99	90.097	Ursus_maritimus
ENSXMAG00000017048	cpsf2	99	85.787	ENSVPAG00000003503	CPSF2	100	85.787	Vicugna_pacos
ENSXMAG00000017048	cpsf2	100	85.805	ENSVVUG00000024642	CPSF2	100	85.805	Vulpes_vulpes
ENSXMAG00000017048	cpsf2	100	84.284	ENSXETG00000010289	cpsf2	100	84.284	Xenopus_tropicalis
ENSXMAG00000017048	cpsf2	100	99.365	ENSXCOG00000001764	cpsf2	100	99.365	Xiphophorus_couchianus