EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000017135 (Gene tree)
Gene ID
102230133
Gene Symbol
pabpc1l
Alias
fi20g03|wu:fi20g03|zgc:55855
Full Name
embryonic polyadenylate-binding protein-like
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
8840 bases
Position
chr1:20305741-20314580
Accession
102230133
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000027813PABPPF00658.182.1e-2811
ENSXMAP00000017183PABPPF00658.182.4e-2811
ENSXMAP00000039772PABPPF00658.182.6e-2811
ENSXMAP00000039772RRM_5PF13893.67e-1113
ENSXMAP00000039772RRM_5PF13893.67e-1123
ENSXMAP00000039772RRM_5PF13893.67e-1133
ENSXMAP00000027813RRM_5PF13893.62.4e-1013
ENSXMAP00000027813RRM_5PF13893.62.4e-1023
ENSXMAP00000027813RRM_5PF13893.62.4e-1033
ENSXMAP00000017183RRM_5PF13893.64e-1013
ENSXMAP00000017183RRM_5PF13893.64e-1023
ENSXMAP00000017183RRM_5PF13893.64e-1033
ENSXMAP00000027813RRM_1PF00076.222.1e-8914
ENSXMAP00000027813RRM_1PF00076.222.1e-8924
ENSXMAP00000027813RRM_1PF00076.222.1e-8934
ENSXMAP00000027813RRM_1PF00076.222.1e-8944
ENSXMAP00000039772RRM_1PF00076.223e-8914
ENSXMAP00000039772RRM_1PF00076.223e-8924
ENSXMAP00000039772RRM_1PF00076.223e-8934
ENSXMAP00000039772RRM_1PF00076.223e-8944
ENSXMAP00000017183RRM_1PF00076.223.6e-8914
ENSXMAP00000017183RRM_1PF00076.223.6e-8924
ENSXMAP00000017183RRM_1PF00076.223.6e-8934
ENSXMAP00000017183RRM_1PF00076.223.6e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000017207-1883XM_023331898ENSXMAP00000017183619 (aa)XP_023187666M4ART8
ENSXMAT00000031550-1686-ENSXMAP00000027813561 (aa)--
ENSXMAT00000033773-1979XM_023331892ENSXMAP00000039772651 (aa)XP_023187660UPI000C6DC06A
Gene Model
Click here to download ENSXMAG00000017135's gene model file
Pathways
Pathway IDPathway NameSource
xma03013RNA transportKEGG
xma03015mRNA surveillance pathwayKEGG
xma03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000017135's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000017135pabpc1l9969.206ENSG00000101104PABPC1L9876.543Homo_sapiens
ENSXMAG00000017135pabpc1l9982.183ENSAPOG00000010842pabpc1l9982.183Acanthochromis_polyacanthus
ENSXMAG00000017135pabpc1l8979.545ENSAMEG00000004099PABPC1L8779.545Ailuropoda_melanoleuca
ENSXMAG00000017135pabpc1l10087.241ENSACIG00000021004-10091.211Amphilophus_citrinellus
ENSXMAG00000017135pabpc1l10084.665ENSAOCG00000006167-10084.665Amphiprion_ocellaris
ENSXMAG00000017135pabpc1l10083.227ENSAPEG00000010558-9989.450Amphiprion_percula
ENSXMAG00000017135pabpc1l10086.010ENSATEG00000007428pabpc1l10086.645Anabas_testudineus
ENSXMAG00000017135pabpc1l9871.820ENSAPLG00000008415PABPC1L9971.770Anas_platyrhynchos
ENSXMAG00000017135pabpc1l9973.354ENSACAG00000011841PABPC1L9973.354Anolis_carolinensis
ENSXMAG00000017135pabpc1l9968.770ENSANAG00000026826PABPC1L9968.770Aotus_nancymaae
ENSXMAG00000017135pabpc1l10088.339ENSACLG00000024791pabpc1l10088.339Astatotilapia_calliptera
ENSXMAG00000017135pabpc1l10080.127ENSAMXG00000013552pabpc1l10080.127Astyanax_mexicanus
ENSXMAG00000017135pabpc1l6987.500ENSBTAG00000055300-10087.500Bos_taurus
ENSXMAG00000017135pabpc1l7362.807ENSBTAG00000016849PABPC1L8364.364Bos_taurus
ENSXMAG00000017135pabpc1l6580.460ENSCJAG00000038506-10080.460Callithrix_jacchus
ENSXMAG00000017135pabpc1l9968.932ENSCJAG00000017628PABPC1L9968.932Callithrix_jacchus
ENSXMAG00000017135pabpc1l9971.861ENSCAFG00000009573PABPC1L10064.264Canis_familiaris
ENSXMAG00000017135pabpc1l9969.144ENSCAFG00020013828PABPC1L9969.144Canis_lupus_dingo
ENSXMAG00000017135pabpc1l9868.637ENSCHIG00000025759PABPC1L9168.637Capra_hircus
ENSXMAG00000017135pabpc1l9968.285ENSTSYG00000006645PABPC1L9968.285Carlito_syrichta
ENSXMAG00000017135pabpc1l9862.842ENSCAPG00000014519PABPC1L9962.842Cavia_aperea
ENSXMAG00000017135pabpc1l9965.378ENSCPOG00000013633PABPC1L9965.378Cavia_porcellus
ENSXMAG00000017135pabpc1l9968.285ENSCCAG00000023338PABPC1L9968.932Cebus_capucinus
ENSXMAG00000017135pabpc1l9969.206ENSCATG00000034065PABPC1L9969.579Cercocebus_atys
ENSXMAG00000017135pabpc1l9964.573ENSCLAG00000005298PABPC1L9965.217Chinchilla_lanigera
ENSXMAG00000017135pabpc1l9969.206ENSCSAG00000014242PABPC1L9969.579Chlorocebus_sabaeus
ENSXMAG00000017135pabpc1l5589.916ENSCPBG00000007810-8189.916Chrysemys_picta_bellii
ENSXMAG00000017135pabpc1l7880.045ENSCPBG00000017755-9980.045Chrysemys_picta_bellii
ENSXMAG00000017135pabpc1l8370.115ENSCING00000002796-8370.115Ciona_intestinalis
ENSXMAG00000017135pabpc1l9568.889ENSCSAVG00000003102-10083.893Ciona_savignyi
ENSXMAG00000017135pabpc1l9961.913ENSCSAVG00000004246-8972.185Ciona_savignyi
ENSXMAG00000017135pabpc1l9965.815ENSCANG00000037530PABPC1L9966.188Colobus_angolensis_palliatus
ENSXMAG00000017135pabpc1l9961.637ENSCGRG00001021938Pabpc1l9961.637Cricetulus_griseus_chok1gshd
ENSXMAG00000017135pabpc1l9961.637ENSCGRG00000007946Pabpc1l9961.637Cricetulus_griseus_crigri
ENSXMAG00000017135pabpc1l9981.593ENSCSEG00000021295pabpc1l9981.593Cynoglossus_semilaevis
ENSXMAG00000017135pabpc1l10090.821ENSCVAG00000015943-9997.710Cyprinodon_variegatus
ENSXMAG00000017135pabpc1l9978.185ENSDARG00000002597pabpc1l8896.154Danio_rerio
ENSXMAG00000017135pabpc1l9968.153ENSDNOG00000048450PABPC1L9968.153Dasypus_novemcinctus
ENSXMAG00000017135pabpc1l9965.964ENSDORG00000001067Pabpc1l9965.964Dipodomys_ordii
ENSXMAG00000017135pabpc1l9576.829ENSETEG00000009969PABPC1L7276.829Echinops_telfairi
ENSXMAG00000017135pabpc1l5674.684ENSEASG00005023407-6474.684Equus_asinus_asinus
ENSXMAG00000017135pabpc1l6985.119ENSEASG00005023408-10085.119Equus_asinus_asinus
ENSXMAG00000017135pabpc1l7267.857ENSECAG00000040139-8863.525Equus_caballus
ENSXMAG00000017135pabpc1l9966.181ENSEEUG00000005978PABPC1L9966.181Erinaceus_europaeus
ENSXMAG00000017135pabpc1l10080.817ENSELUG00000001811pabpc1l10080.817Esox_lucius
ENSXMAG00000017135pabpc1l9968.790ENSFCAG00000011692PABPC1L9968.790Felis_catus
ENSXMAG00000017135pabpc1l8375.625ENSFALG00000005372PABPC1L9271.091Ficedula_albicollis
ENSXMAG00000017135pabpc1l9967.517ENSFDAG00000008291PABPC1L9967.517Fukomys_damarensis
ENSXMAG00000017135pabpc1l10094.032ENSFHEG00000003398pabpc1l10094.032Fundulus_heteroclitus
ENSXMAG00000017135pabpc1l9981.571ENSGMOG00000004437pabpc1l9981.571Gadus_morhua
ENSXMAG00000017135pabpc1l9573.792ENSGALG00000004123PABPC1L9980.048Gallus_gallus
ENSXMAG00000017135pabpc1l10098.618ENSGAFG00000021057pabpc1l10098.618Gambusia_affinis
ENSXMAG00000017135pabpc1l9985.209ENSGACG00000002792pabpc1l10085.209Gasterosteus_aculeatus
ENSXMAG00000017135pabpc1l9974.690ENSGAGG00000000589PABPC1L9878.899Gopherus_agassizii
ENSXMAG00000017135pabpc1l9969.206ENSGGOG00000004584PABPC1L9969.579Gorilla_gorilla
ENSXMAG00000017135pabpc1l10088.179ENSHBUG00000006134pabpc1l10088.179Haplochromis_burtoni
ENSXMAG00000017135pabpc1l10065.495ENSHGLG00000008434PABPC1L9966.023Heterocephalus_glaber_female
ENSXMAG00000017135pabpc1l6486.517ENSHGLG00100019506-10086.905Heterocephalus_glaber_male
ENSXMAG00000017135pabpc1l10065.495ENSHGLG00100012151PABPC1L9966.023Heterocephalus_glaber_male
ENSXMAG00000017135pabpc1l9984.526ENSHCOG00000009270pabpc1l10084.526Hippocampus_comes
ENSXMAG00000017135pabpc1l6561.453ENSIPUG00000006760-9061.453Ictalurus_punctatus
ENSXMAG00000017135pabpc1l6561.453ENSIPUG00000006780-8761.453Ictalurus_punctatus
ENSXMAG00000017135pabpc1l10079.862ENSIPUG00000012602pabpc1l10079.862Ictalurus_punctatus
ENSXMAG00000017135pabpc1l9967.961ENSSTOG00000003739PABPC1L9967.961Ictidomys_tridecemlineatus
ENSXMAG00000017135pabpc1l9952.793ENSJJAG00000022406Pabpc1l9951.369Jaculus_jaculus
ENSXMAG00000017135pabpc1l10087.719ENSKMAG00000016847pabpc1l10087.719Kryptolebias_marmoratus
ENSXMAG00000017135pabpc1l10086.741ENSLBEG00000010084pabpc1l10086.741Labrus_bergylta
ENSXMAG00000017135pabpc1l9971.073ENSLACG00000005762PABPC1L9971.073Latimeria_chalumnae
ENSXMAG00000017135pabpc1l9979.081ENSLOCG00000007519pabpc1l9979.081Lepisosteus_oculatus
ENSXMAG00000017135pabpc1l9967.035ENSLAFG00000003553PABPC1L10067.035Loxodonta_africana
ENSXMAG00000017135pabpc1l9969.530ENSMFAG00000040365PABPC1L9969.903Macaca_fascicularis
ENSXMAG00000017135pabpc1l9968.558ENSMNEG00000032298PABPC1L9968.932Macaca_nemestrina
ENSXMAG00000017135pabpc1l9969.206ENSMLEG00000043139PABPC1L9969.579Mandrillus_leucophaeus
ENSXMAG00000017135pabpc1l9787.500ENSMAMG00000011854pabpc1l9787.500Mastacembelus_armatus
ENSXMAG00000017135pabpc1l10088.339ENSMZEG00005023713pabpc1l10088.339Maylandia_zebra
ENSXMAG00000017135pabpc1l9972.178ENSMGAG00000003674PABPC1L9972.178Meleagris_gallopavo
ENSXMAG00000017135pabpc1l9960.447ENSMOCG00000013186Pabpc1l9960.447Microtus_ochrogaster
ENSXMAG00000017135pabpc1l9985.490ENSMMOG00000020574-9096.923Mola_mola
ENSXMAG00000017135pabpc1l9769.968ENSMODG00000016198PABPC1L9969.968Monodelphis_domestica
ENSXMAG00000017135pabpc1l9984.370ENSMALG00000021622pabpc1l10085.997Monopterus_albus
ENSXMAG00000017135pabpc1l9961.760MGP_CAROLIEiJ_G0024627Pabpc1l9961.760Mus_caroli
ENSXMAG00000017135pabpc1l9961.760ENSMUSG00000054582Pabpc1l9961.760Mus_musculus
ENSXMAG00000017135pabpc1l10062.201MGP_PahariEiJ_G0026071Pabpc1l10062.201Mus_pahari
ENSXMAG00000017135pabpc1l9961.760MGP_SPRETEiJ_G0025549Pabpc1l9961.760Mus_spretus
ENSXMAG00000017135pabpc1l9968.631ENSMPUG00000017646PABPC1L9968.631Mustela_putorius_furo
ENSXMAG00000017135pabpc1l9866.935ENSMLUG00000006324PABPC1L9866.935Myotis_lucifugus
ENSXMAG00000017135pabpc1l9963.387ENSNGAG00000010458Pabpc1l9963.387Nannospalax_galili
ENSXMAG00000017135pabpc1l10087.859ENSNBRG00000016633pabpc1l10093.253Neolamprologus_brichardi
ENSXMAG00000017135pabpc1l8966.117ENSMEUG00000007905-8966.117Notamacropus_eugenii
ENSXMAG00000017135pabpc1l9967.472ENSOPRG00000011846PABPC1L9967.472Ochotona_princeps
ENSXMAG00000017135pabpc1l6380.625ENSODEG00000002920-9780.625Octodon_degus
ENSXMAG00000017135pabpc1l9963.972ENSODEG00000015482PABPC1L9963.972Octodon_degus
ENSXMAG00000017135pabpc1l10088.179ENSONIG00000017314pabpc1l10088.179Oreochromis_niloticus
ENSXMAG00000017135pabpc1l9062.522ENSOANG00000015793-10062.522Ornithorhynchus_anatinus
ENSXMAG00000017135pabpc1l9970.417ENSOCUG00000003005PABPC1L9670.833Oryctolagus_cuniculus
ENSXMAG00000017135pabpc1l10087.631ENSORLG00000010322pabpc1l10089.486Oryzias_latipes
ENSXMAG00000017135pabpc1l10085.942ENSORLG00020021193pabpc1l10089.486Oryzias_latipes_hni
ENSXMAG00000017135pabpc1l10085.623ENSORLG00015017018pabpc1l10089.486Oryzias_latipes_hsok
ENSXMAG00000017135pabpc1l10086.798ENSOMEG00000010789pabpc1l10086.798Oryzias_melastigma
ENSXMAG00000017135pabpc1l9967.943ENSOGAG00000032999PABPC1L9967.943Otolemur_garnettii
ENSXMAG00000017135pabpc1l9968.285ENSOARG00000004578PABPC1L9968.285Ovis_aries
ENSXMAG00000017135pabpc1l9969.368ENSPPAG00000039677PABPC1L9969.741Pan_paniscus
ENSXMAG00000017135pabpc1l6867.593ENSPPRG00000019327-9867.593Panthera_pardus
ENSXMAG00000017135pabpc1l9968.650ENSPTIG00000006524PABPC1L9968.650Panthera_tigris_altaica
ENSXMAG00000017135pabpc1l6976.852ENSPTRG00000013531PABPC1L9876.852Pan_troglodytes
ENSXMAG00000017135pabpc1l9969.206ENSPANG00000018788PABPC1L9969.579Papio_anubis
ENSXMAG00000017135pabpc1l10077.424ENSPKIG00000007322pabpc1l10077.424Paramormyrops_kingsleyae
ENSXMAG00000017135pabpc1l5883.969ENSPKIG00000016810-9383.969Paramormyrops_kingsleyae
ENSXMAG00000017135pabpc1l7482.014ENSPSIG00000013289PABPC1L9982.014Pelodiscus_sinensis
ENSXMAG00000017135pabpc1l6996.970ENSPMGG00000023117pabpc1l9794.884Periophthalmus_magnuspinnatus
ENSXMAG00000017135pabpc1l7783.077ENSPMGG00000023121-9183.077Periophthalmus_magnuspinnatus
ENSXMAG00000017135pabpc1l9960.032ENSPEMG00000020671Pabpc1l9960.709Peromyscus_maniculatus_bairdii
ENSXMAG00000017135pabpc1l10098.384ENSPFOG00000013241pabpc1l10098.384Poecilia_formosa
ENSXMAG00000017135pabpc1l5899.231ENSPLAG00000023686-9299.231Poecilia_latipinna
ENSXMAG00000017135pabpc1l10098.061ENSPLAG00000017490-10098.061Poecilia_latipinna
ENSXMAG00000017135pabpc1l5899.231ENSPMEG00000009185-8899.231Poecilia_mexicana
ENSXMAG00000017135pabpc1l10097.577ENSPMEG00000007677pabpc1l10097.577Poecilia_mexicana
ENSXMAG00000017135pabpc1l7398.054ENSPREG00000015886pabpc1l9998.054Poecilia_reticulata
ENSXMAG00000017135pabpc1l9969.206ENSPPYG00000011042PABPC1L9969.579Pongo_abelii
ENSXMAG00000017135pabpc1l6785.938ENSPCAG00000011787-7585.938Procavia_capensis
ENSXMAG00000017135pabpc1l9967.943ENSPCOG00000020630PABPC1L9968.471Propithecus_coquereli
ENSXMAG00000017135pabpc1l9968.599ENSPVAG00000012663PABPC1L9968.599Pteropus_vampyrus
ENSXMAG00000017135pabpc1l9986.940ENSPNYG00000004101pabpc1l10093.494Pundamilia_nyererei
ENSXMAG00000017135pabpc1l10073.609ENSPNAG00000021248pabpc1l10073.609Pygocentrus_nattereri
ENSXMAG00000017135pabpc1l9961.514ENSRNOG00000012750Pabpc1l9962.119Rattus_norvegicus
ENSXMAG00000017135pabpc1l9969.206ENSRBIG00000035381PABPC1L9969.579Rhinopithecus_bieti
ENSXMAG00000017135pabpc1l9969.044ENSRROG00000044498PABPC1L9969.417Rhinopithecus_roxellana
ENSXMAG00000017135pabpc1l9968.608ENSSBOG00000009532-9968.608Saimiri_boliviensis_boliviensis
ENSXMAG00000017135pabpc1l9864.128ENSSHAG00000011446PABPC1L10064.128Sarcophilus_harrisii
ENSXMAG00000017135pabpc1l10079.048ENSSFOG00015017304pabpc1l10079.048Scleropages_formosus
ENSXMAG00000017135pabpc1l9988.809ENSSMAG00000010516pabpc1l9899.225Scophthalmus_maximus
ENSXMAG00000017135pabpc1l10087.540ENSSDUG00000014743pabpc1l10087.540Seriola_dumerili
ENSXMAG00000017135pabpc1l9886.090ENSSLDG00000006981pabpc1l9892.694Seriola_lalandi_dorsalis
ENSXMAG00000017135pabpc1l9972.013ENSSPUG00000004233PABPC1L9972.013Sphenodon_punctatus
ENSXMAG00000017135pabpc1l10085.205ENSSPAG00000017137pabpc1l10085.205Stegastes_partitus
ENSXMAG00000017135pabpc1l9967.496ENSSSCG00000007382PABPC1L9967.496Sus_scrofa
ENSXMAG00000017135pabpc1l9970.717ENSTGUG00000005114PABPC1L10070.717Taeniopygia_guttata
ENSXMAG00000017135pabpc1l9785.502ENSTRUG00000011085pabpc1l9785.502Takifugu_rubripes
ENSXMAG00000017135pabpc1l9983.280ENSTNIG00000017903pabpc1l9883.280Tetraodon_nigroviridis
ENSXMAG00000017135pabpc1l9476.712ENSTBEG00000002851PABPC1L7976.712Tupaia_belangeri
ENSXMAG00000017135pabpc1l9466.327ENSTTRG00000007618PABPC1L10066.722Tursiops_truncatus
ENSXMAG00000017135pabpc1l9970.017ENSUAMG00000017682PABPC1L9970.017Ursus_americanus
ENSXMAG00000017135pabpc1l7373.538ENSUMAG00000025436PABPC1L9273.538Ursus_maritimus
ENSXMAG00000017135pabpc1l9780.465ENSVVUG00000018939PABPC1L9680.465Vulpes_vulpes
ENSXMAG00000017135pabpc1l9969.194ENSXETG00000022831pabpc1l9969.194Xenopus_tropicalis
ENSXMAG00000017135pabpc1l10098.869ENSXCOG00000005459pabpc1l10098.869Xiphophorus_couchianus

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