EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000017209 (Gene tree)
Gene ID: 102229634
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 25388 bases
Position: chr17:594847-620234
Accession: 102229634
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000022665	Upf2	PF04050.14	1.8e-32	1	1
ENSXMAP00000038091	Upf2	PF04050.14	1.8e-32	1	1
ENSXMAP00000017273	Upf2	PF04050.14	2e-32	1	1
ENSXMAP00000022665	MIF4G	PF02854.19	1.8e-80	1	3
ENSXMAP00000022665	MIF4G	PF02854.19	1.8e-80	2	3
ENSXMAP00000022665	MIF4G	PF02854.19	1.8e-80	3	3
ENSXMAP00000038091	MIF4G	PF02854.19	1.8e-80	1	3
ENSXMAP00000038091	MIF4G	PF02854.19	1.8e-80	2	3
ENSXMAP00000038091	MIF4G	PF02854.19	1.8e-80	3	3
ENSXMAP00000017273	MIF4G	PF02854.19	2e-80	1	3
ENSXMAP00000017273	MIF4G	PF02854.19	2e-80	2	3
ENSXMAP00000017273	MIF4G	PF02854.19	2e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000036815	UPF2-201	7326	XM_005811184	ENSXMAP00000038091	1275 (aa)	XP_005811241	UPI0003B4717A
ENSXMAT00000023446	UPF2-202	7252	XM_023350263	ENSXMAP00000022665	1275 (aa)	XP_023206031	UPI0003B4717A
ENSXMAT00000017297	UPF2-203	5640	XM_014473367	ENSXMAP00000017273	1307 (aa)	XP_014328853	M4AS28

Gene Model

Click here to download ENSXMAG00000017209's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000017209's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000017209	UPF2	100	81.606	ENSG00000151461	UPF2	92	84.740	Homo_sapiens
ENSXMAG00000017209	UPF2	99	88.619	ENSAPOG00000015837	UPF2	100	88.263	Acanthochromis_polyacanthus
ENSXMAG00000017209	UPF2	100	82.059	ENSAMEG00000004586	UPF2	92	84.983	Ailuropoda_melanoleuca
ENSXMAG00000017209	UPF2	99	93.730	ENSACIG00000018078	UPF2	100	94.122	Amphilophus_citrinellus
ENSXMAG00000017209	UPF2	100	94.592	ENSAOCG00000016766	UPF2	100	94.592	Amphiprion_ocellaris
ENSXMAG00000017209	UPF2	100	94.671	ENSAPEG00000019084	UPF2	100	94.671	Amphiprion_percula
ENSXMAG00000017209	UPF2	100	93.584	ENSATEG00000021677	UPF2	99	93.975	Anabas_testudineus
ENSXMAG00000017209	UPF2	100	78.149	ENSAPLG00000010287	UPF2	90	82.833	Anas_platyrhynchos
ENSXMAG00000017209	UPF2	100	81.903	ENSACAG00000009259	UPF2	100	82.215	Anolis_carolinensis
ENSXMAG00000017209	UPF2	91	78.522	ENSANAG00000028451	UPF2	93	78.902	Aotus_nancymaae
ENSXMAG00000017209	UPF2	100	93.427	ENSACLG00000012696	UPF2	100	93.818	Astatotilapia_calliptera
ENSXMAG00000017209	UPF2	99	88.428	ENSAMXG00000013700	UPF2	99	86.161	Astyanax_mexicanus
ENSXMAG00000017209	UPF2	100	81.903	ENSBTAG00000000288	UPF2	100	79.875	Bos_taurus
ENSXMAG00000017209	UPF2	100	81.435	ENSCJAG00000020685	UPF2	92	84.569	Callithrix_jacchus
ENSXMAG00000017209	UPF2	100	82.059	ENSCAFG00000004839	UPF2	92	84.983	Canis_familiaris
ENSXMAG00000017209	UPF2	95	86.364	ENSCAFG00020005882	UPF2	92	82.650	Canis_lupus_dingo
ENSXMAG00000017209	UPF2	100	82.059	ENSCHIG00000020359	UPF2	100	80.031	Capra_hircus
ENSXMAG00000017209	UPF2	100	81.747	ENSTSYG00000000935	UPF2	97	85.311	Carlito_syrichta
ENSXMAG00000017209	UPF2	91	74.080	ENSCAPG00000016658	UPF2	95	74.188	Cavia_aperea
ENSXMAG00000017209	UPF2	91	82.464	ENSCPOG00000008809	UPF2	92	82.806	Cavia_porcellus
ENSXMAG00000017209	UPF2	96	82.341	ENSCCAG00000035991	UPF2	100	83.368	Cebus_capucinus
ENSXMAG00000017209	UPF2	100	81.606	ENSCATG00000032679	UPF2	92	84.740	Cercocebus_atys
ENSXMAG00000017209	UPF2	100	81.109	ENSCLAG00000011434	UPF2	100	80.250	Chinchilla_lanigera
ENSXMAG00000017209	UPF2	100	81.606	ENSCSAG00000013372	UPF2	92	84.740	Chlorocebus_sabaeus
ENSXMAG00000017209	UPF2	79	88.667	ENSCHOG00000000422	UPF2	83	88.667	Choloepus_hoffmanni
ENSXMAG00000017209	UPF2	99	80.673	ENSCPBG00000027823	UPF2	100	81.064	Chrysemys_picta_bellii
ENSXMAG00000017209	UPF2	79	49.361	ENSCSAVG00000007772	-	99	48.134	Ciona_savignyi
ENSXMAG00000017209	UPF2	99	76.452	ENSCANG00000040396	UPF2	91	79.437	Colobus_angolensis_palliatus
ENSXMAG00000017209	UPF2	100	81.343	ENSCGRG00001019347	Upf2	92	84.202	Cricetulus_griseus_chok1gshd
ENSXMAG00000017209	UPF2	100	81.343	ENSCGRG00000017993	Upf2	92	84.202	Cricetulus_griseus_crigri
ENSXMAG00000017209	UPF2	99	85.613	ENSCSEG00000003520	UPF2	99	84.796	Cynoglossus_semilaevis
ENSXMAG00000017209	UPF2	99	96.130	ENSCVAG00000006167	UPF2	100	96.130	Cyprinodon_variegatus
ENSXMAG00000017209	UPF2	100	81.825	ENSDNOG00000018160	UPF2	92	84.983	Dasypus_novemcinctus
ENSXMAG00000017209	UPF2	100	81.279	ENSDORG00000002478	Upf2	100	79.329	Dipodomys_ordii
ENSXMAG00000017209	UPF2	89	35.732	FBgn0029992	Upf2	73	39.384	Drosophila_melanogaster
ENSXMAG00000017209	UPF2	73	91.971	ENSETEG00000011583	-	62	91.667	Echinops_telfairi
ENSXMAG00000017209	UPF2	64	71.523	ENSEBUG00000012448	-	93	68.862	Eptatretus_burgeri
ENSXMAG00000017209	UPF2	100	81.030	ENSEASG00005019274	UPF2	100	80.250	Equus_asinus_asinus
ENSXMAG00000017209	UPF2	100	81.030	ENSECAG00000017022	UPF2	92	84.898	Equus_caballus
ENSXMAG00000017209	UPF2	82	74.214	ENSEEUG00000007819	UPF2	69	85.025	Erinaceus_europaeus
ENSXMAG00000017209	UPF2	99	87.666	ENSELUG00000012014	UPF2	100	87.598	Esox_lucius
ENSXMAG00000017209	UPF2	100	85.246	ENSFCAG00000005785	UPF2	100	80.109	Felis_catus
ENSXMAG00000017209	UPF2	100	82.917	ENSFALG00000001889	UPF2	98	82.995	Ficedula_albicollis
ENSXMAG00000017209	UPF2	100	80.640	ENSFDAG00000014348	UPF2	100	79.859	Fukomys_damarensis
ENSXMAG00000017209	UPF2	99	96.601	ENSFHEG00000009826	UPF2	100	96.601	Fundulus_heteroclitus
ENSXMAG00000017209	UPF2	91	88.438	ENSGMOG00000005557	UPF2	100	85.725	Gadus_morhua
ENSXMAG00000017209	UPF2	100	82.931	ENSGALG00000033772	UPF2	100	82.659	Gallus_gallus
ENSXMAG00000017209	UPF2	100	99.005	ENSGAFG00000020867	UPF2	100	99.005	Gambusia_affinis
ENSXMAG00000017209	UPF2	99	90.539	ENSGACG00000001080	UPF2	100	90.696	Gasterosteus_aculeatus
ENSXMAG00000017209	UPF2	100	81.747	ENSGAGG00000002700	UPF2	92	84.983	Gopherus_agassizii
ENSXMAG00000017209	UPF2	100	81.606	ENSGGOG00000001479	UPF2	92	84.740	Gorilla_gorilla
ENSXMAG00000017209	UPF2	100	93.271	ENSHBUG00000004249	UPF2	100	93.809	Haplochromis_burtoni
ENSXMAG00000017209	UPF2	100	80.718	ENSHGLG00000015176	-	92	84.556	Heterocephalus_glaber_female
ENSXMAG00000017209	UPF2	99	71.931	ENSHGLG00000003822	-	99	72.244	Heterocephalus_glaber_female
ENSXMAG00000017209	UPF2	99	78.577	ENSHGLG00100010036	UPF2	95	80.824	Heterocephalus_glaber_male
ENSXMAG00000017209	UPF2	100	89.774	ENSHCOG00000004025	UPF2	99	89.774	Hippocampus_comes
ENSXMAG00000017209	UPF2	100	87.276	ENSIPUG00000015524	UPF2	100	86.963	Ictalurus_punctatus
ENSXMAG00000017209	UPF2	100	81.825	ENSSTOG00000013075	UPF2	92	84.668	Ictidomys_tridecemlineatus
ENSXMAG00000017209	UPF2	100	78.376	ENSJJAG00000004913	Upf2	100	78.722	Jaculus_jaculus
ENSXMAG00000017209	UPF2	99	93.454	ENSKMAG00000001071	UPF2	100	93.533	Kryptolebias_marmoratus
ENSXMAG00000017209	UPF2	100	92.097	ENSLBEG00000016394	-	99	92.879	Labrus_bergylta
ENSXMAG00000017209	UPF2	80	89.324	ENSLBEG00000000728	-	94	89.756	Labrus_bergylta
ENSXMAG00000017209	UPF2	91	77.568	ENSLACG00000015945	UPF2	99	75.838	Latimeria_chalumnae
ENSXMAG00000017209	UPF2	99	87.480	ENSLOCG00000015698	UPF2	100	87.087	Lepisosteus_oculatus
ENSXMAG00000017209	UPF2	100	81.606	ENSMFAG00000043865	UPF2	92	84.740	Macaca_fascicularis
ENSXMAG00000017209	UPF2	100	81.606	ENSMMUG00000008241	UPF2	92	84.740	Macaca_mulatta
ENSXMAG00000017209	UPF2	80	82.066	ENSMNEG00000008062	UPF2	89	85.590	Macaca_nemestrina
ENSXMAG00000017209	UPF2	99	79.563	ENSMLEG00000036120	UPF2	92	82.408	Mandrillus_leucophaeus
ENSXMAG00000017209	UPF2	100	91.471	ENSMAMG00000018276	UPF2	100	93.662	Mastacembelus_armatus
ENSXMAG00000017209	UPF2	100	93.427	ENSMZEG00005021595	UPF2	100	93.818	Maylandia_zebra
ENSXMAG00000017209	UPF2	99	82.381	ENSMGAG00000004573	UPF2	99	82.188	Meleagris_gallopavo
ENSXMAG00000017209	UPF2	100	79.313	ENSMAUG00000016512	Upf2	100	77.283	Mesocricetus_auratus
ENSXMAG00000017209	UPF2	99	79.375	ENSMICG00000001716	UPF2	91	81.485	Microcebus_murinus
ENSXMAG00000017209	UPF2	100	80.547	ENSMOCG00000008263	Upf2	100	79.688	Microtus_ochrogaster
ENSXMAG00000017209	UPF2	99	89.011	ENSMMOG00000006528	UPF2	100	88.854	Mola_mola
ENSXMAG00000017209	UPF2	100	79.953	ENSMODG00000016794	UPF2	92	85.154	Monodelphis_domestica
ENSXMAG00000017209	UPF2	99	92.308	ENSMALG00000002663	UPF2	100	92.386	Monopterus_albus
ENSXMAG00000017209	UPF2	100	81.109	MGP_CAROLIEiJ_G0023157	Upf2	99	84.261	Mus_caroli
ENSXMAG00000017209	UPF2	100	81.265	ENSMUSG00000043241	Upf2	99	83.208	Mus_musculus
ENSXMAG00000017209	UPF2	100	81.499	MGP_PahariEiJ_G0019217	Upf2	100	83.019	Mus_pahari
ENSXMAG00000017209	UPF2	100	81.499	MGP_SPRETEiJ_G0024075	Upf2	100	83.208	Mus_spretus
ENSXMAG00000017209	UPF2	100	81.981	ENSMPUG00000001064	UPF2	92	85.068	Mustela_putorius_furo
ENSXMAG00000017209	UPF2	99	80.967	ENSMLUG00000000228	UPF2	92	83.901	Myotis_lucifugus
ENSXMAG00000017209	UPF2	100	93.427	ENSNBRG00000013629	UPF2	100	93.818	Neolamprologus_brichardi
ENSXMAG00000017209	UPF2	100	81.528	ENSNLEG00000012058	UPF2	92	84.655	Nomascus_leucogenys
ENSXMAG00000017209	UPF2	72	92.254	ENSOPRG00000006801	-	73	92.254	Ochotona_princeps
ENSXMAG00000017209	UPF2	100	80.607	ENSODEG00000001290	UPF2	100	79.829	Octodon_degus
ENSXMAG00000017209	UPF2	100	93.036	ENSONIG00000017991	UPF2	100	93.427	Oreochromis_niloticus
ENSXMAG00000017209	UPF2	99	79.455	ENSOCUG00000006230	UPF2	92	84.707	Oryctolagus_cuniculus
ENSXMAG00000017209	UPF2	100	91.464	ENSORLG00000017189	UPF2	100	91.699	Oryzias_latipes
ENSXMAG00000017209	UPF2	100	91.543	ENSORLG00020005969	UPF2	100	91.778	Oryzias_latipes_hni
ENSXMAG00000017209	UPF2	100	91.543	ENSORLG00015005713	UPF2	100	91.778	Oryzias_latipes_hsok
ENSXMAG00000017209	UPF2	99	88.540	ENSOMEG00000023420	UPF2	99	87.837	Oryzias_melastigma
ENSXMAG00000017209	UPF2	100	81.747	ENSOGAG00000005796	UPF2	92	84.471	Otolemur_garnettii
ENSXMAG00000017209	UPF2	100	81.931	ENSOARG00000014587	UPF2	100	79.907	Ovis_aries
ENSXMAG00000017209	UPF2	99	79.095	ENSPPAG00000037953	UPF2	92	81.841	Pan_paniscus
ENSXMAG00000017209	UPF2	100	82.137	ENSPPRG00000000690	UPF2	100	80.109	Panthera_pardus
ENSXMAG00000017209	UPF2	100	82.137	ENSPTIG00000008867	UPF2	100	80.109	Panthera_tigris_altaica
ENSXMAG00000017209	UPF2	100	81.606	ENSPTRG00000002291	UPF2	92	84.740	Pan_troglodytes
ENSXMAG00000017209	UPF2	100	81.606	ENSPANG00000023399	UPF2	92	84.740	Papio_anubis
ENSXMAG00000017209	UPF2	100	87.500	ENSPKIG00000025502	UPF2	100	86.094	Paramormyrops_kingsleyae
ENSXMAG00000017209	UPF2	59	81.028	ENSPSIG00000015158	UPF2	95	80.632	Pelodiscus_sinensis
ENSXMAG00000017209	UPF2	99	88.688	ENSPMGG00000005259	UPF2	100	88.688	Periophthalmus_magnuspinnatus
ENSXMAG00000017209	UPF2	93	73.775	ENSPEMG00000015731	Upf2	90	83.122	Peromyscus_maniculatus_bairdii
ENSXMAG00000017209	UPF2	100	81.790	ENSPCIG00000006656	UPF2	91	85.154	Phascolarctos_cinereus
ENSXMAG00000017209	UPF2	100	98.980	ENSPFOG00000017118	UPF2	100	98.980	Poecilia_formosa
ENSXMAG00000017209	UPF2	100	99.082	ENSPLAG00000005094	UPF2	100	99.082	Poecilia_latipinna
ENSXMAG00000017209	UPF2	100	99.005	ENSPMEG00000017009	UPF2	100	99.005	Poecilia_mexicana
ENSXMAG00000017209	UPF2	99	97.565	ENSPREG00000021880	UPF2	100	97.565	Poecilia_reticulata
ENSXMAG00000017209	UPF2	66	84.342	ENSPPYG00000002089	-	100	84.935	Pongo_abelii
ENSXMAG00000017209	UPF2	97	69.291	ENSPCAG00000000684	UPF2	86	75.274	Procavia_capensis
ENSXMAG00000017209	UPF2	99	78.828	ENSPCOG00000021656	UPF2	100	77.422	Propithecus_coquereli
ENSXMAG00000017209	UPF2	100	75.526	ENSPVAG00000017286	UPF2	100	73.578	Pteropus_vampyrus
ENSXMAG00000017209	UPF2	99	90.831	ENSPNYG00000017096	UPF2	100	91.223	Pundamilia_nyererei
ENSXMAG00000017209	UPF2	100	88.837	ENSPNAG00000009357	UPF2	100	88.681	Pygocentrus_nattereri
ENSXMAG00000017209	UPF2	99	77.185	ENSRNOG00000023593	Upf2	100	93.333	Rattus_norvegicus
ENSXMAG00000017209	UPF2	99	80.391	ENSRBIG00000037780	UPF2	92	83.248	Rhinopithecus_bieti
ENSXMAG00000017209	UPF2	100	81.372	ENSRROG00000043547	UPF2	92	84.399	Rhinopithecus_roxellana
ENSXMAG00000017209	UPF2	100	81.357	ENSSBOG00000020012	UPF2	100	79.485	Saimiri_boliviensis_boliviensis
ENSXMAG00000017209	UPF2	100	86.105	ENSSFOG00015023788	upf2	100	85.948	Scleropages_formosus
ENSXMAG00000017209	UPF2	90	91.753	ENSSMAG00000007637	UPF2	100	90.747	Scophthalmus_maximus
ENSXMAG00000017209	UPF2	100	94.514	ENSSDUG00000017244	UPF2	99	94.514	Seriola_dumerili
ENSXMAG00000017209	UPF2	99	90.895	ENSSLDG00000016866	UPF2	100	90.659	Seriola_lalandi_dorsalis
ENSXMAG00000017209	UPF2	100	78.861	ENSSARG00000008615	UPF2	100	81.123	Sorex_araneus
ENSXMAG00000017209	UPF2	99	79.829	ENSSPUG00000014544	UPF2	99	80.140	Sphenodon_punctatus
ENSXMAG00000017209	UPF2	68	84.229	ENSSSCG00000011117	-	99	84.686	Sus_scrofa
ENSXMAG00000017209	UPF2	99	82.955	ENSTGUG00000002163	-	92	85.885	Taeniopygia_guttata
ENSXMAG00000017209	UPF2	100	91.080	ENSTRUG00000007519	UPF2	99	91.393	Takifugu_rubripes
ENSXMAG00000017209	UPF2	100	88.125	ENSTNIG00000004453	UPF2	100	88.359	Tetraodon_nigroviridis
ENSXMAG00000017209	UPF2	93	72.208	ENSTBEG00000012679	UPF2	93	72.292	Tupaia_belangeri
ENSXMAG00000017209	UPF2	100	81.187	ENSTTRG00000016388	UPF2	100	80.250	Tursiops_truncatus
ENSXMAG00000017209	UPF2	87	93.258	ENSUAMG00000023560	UPF2	89	93.258	Ursus_americanus
ENSXMAG00000017209	UPF2	100	82.059	ENSUMAG00000012953	UPF2	87	84.923	Ursus_maritimus
ENSXMAG00000017209	UPF2	82	96.774	ENSVPAG00000006763	UPF2	77	96.774	Vicugna_pacos
ENSXMAG00000017209	UPF2	100	82.059	ENSVVUG00000006166	UPF2	92	84.983	Vulpes_vulpes
ENSXMAG00000017209	UPF2	100	79.361	ENSXETG00000033103	UPF2	91	83.635	Xenopus_tropicalis
ENSXMAG00000017209	UPF2	99	99.764	ENSXCOG00000011604	UPF2	100	99.764	Xiphophorus_couchianus