EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000017935 (Gene tree)
Gene ID: 102219742
Gene Symbol: snrpc
Alias: U1C|chunp6909|zgc:109792
Full Name: small nuclear ribonucleoprotein polypeptide C
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 6083 bases
Position: chr20:8378480-8384562
Accession: 102219742
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000017975	zf-U1	PF06220.12	1.2e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018001	-	1175	XM_005802198	ENSXMAP00000017975	147 (aa)	XP_005802255	M4AU30

Gene Model

Click here to download ENSXMAG00000017935's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000017935's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000017935	snrpc	100	98.649	ENSAPOG00000013907	snrpc	100	98.649	Acanthochromis_polyacanthus
ENSXMAG00000017935	snrpc	100	98.649	ENSAOCG00000021151	snrpc	100	98.649	Amphiprion_ocellaris
ENSXMAG00000017935	snrpc	100	98.649	ENSAPEG00000023221	snrpc	100	98.649	Amphiprion_percula
ENSXMAG00000017935	snrpc	100	98.649	ENSATEG00000025133	snrpc	100	98.649	Anabas_testudineus
ENSXMAG00000017935	snrpc	100	97.315	ENSACLG00000000843	snrpc	100	97.315	Astatotilapia_calliptera
ENSXMAG00000017935	snrpc	100	77.483	ENSAMXG00000032641	snrpc	100	63.265	Astyanax_mexicanus
ENSXMAG00000017935	snrpc	100	95.973	ENSCSEG00000016845	snrpc	100	95.973	Cynoglossus_semilaevis
ENSXMAG00000017935	snrpc	100	99.320	ENSCVAG00000014297	snrpc	100	99.320	Cyprinodon_variegatus
ENSXMAG00000017935	snrpc	73	99.083	ENSFHEG00000016667	snrpc	97	99.083	Fundulus_heteroclitus
ENSXMAG00000017935	snrpc	99	95.890	ENSGMOG00000000090	snrpc	100	95.890	Gadus_morhua
ENSXMAG00000017935	snrpc	100	100.000	ENSGAFG00000016115	snrpc	100	100.000	Gambusia_affinis
ENSXMAG00000017935	snrpc	99	97.945	ENSGACG00000004899	snrpc	98	97.945	Gasterosteus_aculeatus
ENSXMAG00000017935	snrpc	100	97.315	ENSHBUG00000011637	snrpc	100	97.315	Haplochromis_burtoni
ENSXMAG00000017935	snrpc	100	80.272	ENSHCOG00000001596	snrpc	100	80.272	Hippocampus_comes
ENSXMAG00000017935	snrpc	100	98.649	ENSKMAG00000016356	snrpc	100	98.649	Kryptolebias_marmoratus
ENSXMAG00000017935	snrpc	100	97.987	ENSLBEG00000023881	snrpc	100	97.987	Labrus_bergylta
ENSXMAG00000017935	snrpc	97	58.621	ENSMLEG00000039724	-	81	48.611	Mandrillus_leucophaeus
ENSXMAG00000017935	snrpc	100	98.649	ENSMAMG00000003857	snrpc	100	98.649	Mastacembelus_armatus
ENSXMAG00000017935	snrpc	100	97.315	ENSMZEG00005002199	snrpc	100	97.315	Maylandia_zebra
ENSXMAG00000017935	snrpc	98	98.611	ENSMMOG00000013149	snrpc	100	98.611	Mola_mola
ENSXMAG00000017935	snrpc	100	96.622	ENSMALG00000001197	snrpc	100	96.622	Monopterus_albus
ENSXMAG00000017935	snrpc	100	97.315	ENSONIG00000014757	snrpc	100	97.315	Oreochromis_niloticus
ENSXMAG00000017935	snrpc	96	97.183	ENSORLG00000007308	snrpc	97	97.183	Oryzias_latipes
ENSXMAG00000017935	snrpc	96	96.503	ENSORLG00020012607	SNRPC	97	96.503	Oryzias_latipes_hni
ENSXMAG00000017935	snrpc	100	95.302	ENSOMEG00000012014	snrpc	86	95.302	Oryzias_melastigma
ENSXMAG00000017935	snrpc	97	64.706	ENSOGAG00000028405	-	99	61.842	Otolemur_garnettii
ENSXMAG00000017935	snrpc	98	96.528	ENSPMGG00000022162	snrpc	100	96.528	Periophthalmus_magnuspinnatus
ENSXMAG00000017935	snrpc	100	100.000	ENSPFOG00000015174	snrpc	100	100.000	Poecilia_formosa
ENSXMAG00000017935	snrpc	100	100.000	ENSPLAG00000012311	snrpc	100	100.000	Poecilia_latipinna
ENSXMAG00000017935	snrpc	100	100.000	ENSPMEG00000010274	snrpc	100	100.000	Poecilia_mexicana
ENSXMAG00000017935	snrpc	99	85.034	ENSPREG00000013017	snrpc	79	86.207	Poecilia_reticulata
ENSXMAG00000017935	snrpc	100	78.616	ENSPNAG00000012799	snrpc	100	73.026	Pygocentrus_nattereri
ENSXMAG00000017935	snrpc	100	98.649	ENSSMAG00000008029	snrpc	100	98.649	Scophthalmus_maximus
ENSXMAG00000017935	snrpc	100	98.649	ENSSDUG00000018895	snrpc	81	98.649	Seriola_dumerili
ENSXMAG00000017935	snrpc	100	98.649	ENSSLDG00000005034	snrpc	100	98.649	Seriola_lalandi_dorsalis
ENSXMAG00000017935	snrpc	100	98.649	ENSSPAG00000000914	snrpc	100	98.649	Stegastes_partitus
ENSXMAG00000017935	snrpc	100	86.395	ENSTRUG00000021651	snrpc	100	86.395	Takifugu_rubripes
ENSXMAG00000017935	snrpc	98	95.139	ENSXCOG00000015871	-	100	72.917	Xiphophorus_couchianus