EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018086 (Gene tree)
Gene ID: 102220164
Gene Symbol: -
Alias: -
Full Name: THO complex subunit 4
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 3531 bases
Position: chr5:16654097-16657627
Accession: 102220164
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000031056	RRM_1	PF00076.22	1.8e-17	1	1
ENSXMAP00000018123	RRM_1	PF00076.22	1.9e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018150	-	2133	XM_005803035	ENSXMAP00000018123	242 (aa)	XP_005803092	M4AUH8
ENSXMAT00000034303	-	2230	-	ENSXMAP00000031056	239 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000018086's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG
xma03040	Spliceosome	KEGG
xma05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018086's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018086	-	100	66.667	ENSAPOG00000000183	-	100	66.270	Acanthochromis_polyacanthus
ENSXMAG00000018086	-	99	45.756	ENSACIG00000006351	alyref	97	47.810	Amphilophus_citrinellus
ENSXMAG00000018086	-	100	56.777	ENSACIG00000020351	-	100	56.777	Amphilophus_citrinellus
ENSXMAG00000018086	-	100	67.729	ENSAOCG00000019305	-	100	67.729	Amphiprion_ocellaris
ENSXMAG00000018086	-	100	46.377	ENSAOCG00000014012	alyref	100	48.736	Amphiprion_ocellaris
ENSXMAG00000018086	-	100	68.127	ENSAPEG00000013527	-	100	67.729	Amphiprion_percula
ENSXMAG00000018086	-	100	46.377	ENSAPEG00000014603	alyref	100	48.736	Amphiprion_percula
ENSXMAG00000018086	-	76	50.000	ENSATEG00000004307	alyref	100	46.996	Anabas_testudineus
ENSXMAG00000018086	-	100	67.188	ENSATEG00000000382	-	100	65.613	Anabas_testudineus
ENSXMAG00000018086	-	51	43.871	ENSAPLG00000014745	-	99	54.412	Anas_platyrhynchos
ENSXMAG00000018086	-	100	62.500	ENSACLG00000010184	-	100	62.121	Astatotilapia_calliptera
ENSXMAG00000018086	-	100	45.455	ENSACLG00000008432	alyref	100	47.482	Astatotilapia_calliptera
ENSXMAG00000018086	-	100	46.996	ENSAMXG00000007359	alyref	100	48.410	Astyanax_mexicanus
ENSXMAG00000018086	-	99	40.449	ENSCING00000013568	-	99	42.857	Ciona_intestinalis
ENSXMAG00000018086	-	99	41.961	ENSCSAVG00000003324	-	99	43.200	Ciona_savignyi
ENSXMAG00000018086	-	100	45.421	ENSCSEG00000017800	alyref	100	48.727	Cynoglossus_semilaevis
ENSXMAG00000018086	-	100	48.529	ENSCVAG00000014869	alyref	100	51.282	Cyprinodon_variegatus
ENSXMAG00000018086	-	100	88.430	ENSCVAG00000007789	-	100	88.430	Cyprinodon_variegatus
ENSXMAG00000018086	-	100	46.127	ENSDARG00000077732	alyref	100	47.872	Danio_rerio
ENSXMAG00000018086	-	99	41.241	FBgn0010774	Ref1	100	36.232	Drosophila_melanogaster
ENSXMAG00000018086	-	100	43.825	ENSEBUG00000006305	alyref	100	41.569	Eptatretus_burgeri
ENSXMAG00000018086	-	100	44.788	ENSEBUG00000008253	alyref	96	43.071	Eptatretus_burgeri
ENSXMAG00000018086	-	100	51.685	ENSELUG00000008849	-	100	53.558	Esox_lucius
ENSXMAG00000018086	-	100	46.209	ENSELUG00000017178	alyref	100	49.455	Esox_lucius
ENSXMAG00000018086	-	60	55.769	ENSFALG00000011923	-	98	55.414	Ficedula_albicollis
ENSXMAG00000018086	-	100	91.358	ENSFHEG00000004698	-	100	91.358	Fundulus_heteroclitus
ENSXMAG00000018086	-	100	46.494	ENSFHEG00000019426	alyref	100	47.482	Fundulus_heteroclitus
ENSXMAG00000018086	-	100	48.881	ENSGMOG00000009882	alyref	100	48.352	Gadus_morhua
ENSXMAG00000018086	-	71	57.447	ENSGMOG00000013122	-	100	57.447	Gadus_morhua
ENSXMAG00000018086	-	100	47.619	ENSGAFG00000006014	alyref	100	49.446	Gambusia_affinis
ENSXMAG00000018086	-	100	92.149	ENSGAFG00000007573	-	100	90.496	Gambusia_affinis
ENSXMAG00000018086	-	100	45.455	ENSHBUG00000020196	alyref	100	47.482	Haplochromis_burtoni
ENSXMAG00000018086	-	100	62.921	ENSHBUG00000001454	-	100	62.172	Haplochromis_burtoni
ENSXMAG00000018086	-	100	61.328	ENSHCOG00000012825	-	95	58.594	Hippocampus_comes
ENSXMAG00000018086	-	99	47.015	ENSIPUG00000009469	alyref	100	46.570	Ictalurus_punctatus
ENSXMAG00000018086	-	76	53.125	ENSSTOG00000016570	-	99	53.125	Ictidomys_tridecemlineatus
ENSXMAG00000018086	-	100	69.547	ENSKMAG00000006462	-	100	69.959	Kryptolebias_marmoratus
ENSXMAG00000018086	-	100	47.101	ENSKMAG00000008912	alyref	100	47.122	Kryptolebias_marmoratus
ENSXMAG00000018086	-	99	64.567	ENSLBEG00000012930	-	99	59.843	Labrus_bergylta
ENSXMAG00000018086	-	99	50.598	ENSLBEG00000023118	alyref	88	51.587	Labrus_bergylta
ENSXMAG00000018086	-	100	62.774	ENSLBEG00000005387	-	100	60.584	Labrus_bergylta
ENSXMAG00000018086	-	76	48.780	ENSLOCG00000013879	alyref	88	47.768	Lepisosteus_oculatus
ENSXMAG00000018086	-	100	46.014	ENSMAMG00000003034	alyref	100	47.292	Mastacembelus_armatus
ENSXMAG00000018086	-	100	66.008	ENSMAMG00000005464	-	100	64.032	Mastacembelus_armatus
ENSXMAG00000018086	-	100	45.455	ENSMZEG00005008639	alyref	100	47.482	Maylandia_zebra
ENSXMAG00000018086	-	100	62.121	ENSMZEG00005012096	-	100	61.742	Maylandia_zebra
ENSXMAG00000018086	-	99	57.895	ENSMMOG00000007032	-	100	56.574	Mola_mola
ENSXMAG00000018086	-	99	47.212	ENSMMOG00000012458	alyref	96	48.162	Mola_mola
ENSXMAG00000018086	-	100	66.540	ENSMALG00000006054	-	100	66.920	Monopterus_albus
ENSXMAG00000018086	-	100	41.812	ENSMLUG00000014372	-	100	46.296	Myotis_lucifugus
ENSXMAG00000018086	-	74	48.421	ENSMLUG00000028605	-	98	41.241	Myotis_lucifugus
ENSXMAG00000018086	-	74	48.205	ENSMLUG00000009247	-	98	43.561	Myotis_lucifugus
ENSXMAG00000018086	-	74	51.630	ENSMLUG00000030671	-	98	43.866	Myotis_lucifugus
ENSXMAG00000018086	-	74	49.206	ENSMLUG00000022178	-	98	42.322	Myotis_lucifugus
ENSXMAG00000018086	-	98	42.238	ENSMLUG00000022467	-	98	42.545	Myotis_lucifugus
ENSXMAG00000018086	-	100	43.571	ENSMLUG00000004098	-	100	48.496	Myotis_lucifugus
ENSXMAG00000018086	-	100	45.149	ENSMLUG00000006521	-	100	47.388	Myotis_lucifugus
ENSXMAG00000018086	-	100	51.029	ENSNGAG00000022014	-	100	51.394	Nannospalax_galili
ENSXMAG00000018086	-	100	62.500	ENSNBRG00000017460	-	100	62.121	Neolamprologus_brichardi
ENSXMAG00000018086	-	100	45.848	ENSNBRG00000001747	alyref	100	47.857	Neolamprologus_brichardi
ENSXMAG00000018086	-	100	62.692	ENSONIG00000003296	-	100	62.692	Oreochromis_niloticus
ENSXMAG00000018086	-	100	44.643	ENSONIG00000019434	alyref	100	47.703	Oreochromis_niloticus
ENSXMAG00000018086	-	99	56.478	ENSORLG00000001620	-	88	54.817	Oryzias_latipes
ENSXMAG00000018086	-	100	68.504	ENSORLG00020015673	-	99	68.379	Oryzias_latipes_hni
ENSXMAG00000018086	-	100	46.182	ENSORLG00020011942	alyref	100	46.545	Oryzias_latipes_hni
ENSXMAG00000018086	-	100	46.520	ENSORLG00015022664	alyref	100	46.886	Oryzias_latipes_hsok
ENSXMAG00000018086	-	100	71.094	ENSORLG00015015143	-	99	68.235	Oryzias_latipes_hsok
ENSXMAG00000018086	-	100	43.448	ENSOMEG00000019176	alyref	100	47.445	Oryzias_melastigma
ENSXMAG00000018086	-	99	71.951	ENSOMEG00000007158	-	99	68.127	Oryzias_melastigma
ENSXMAG00000018086	-	88	46.154	ENSPPAG00000036403	-	82	51.152	Pan_paniscus
ENSXMAG00000018086	-	100	48.551	ENSPKIG00000007070	alyref	100	51.527	Paramormyrops_kingsleyae
ENSXMAG00000018086	-	99	49.430	ENSPKIG00000006233	-	80	51.181	Paramormyrops_kingsleyae
ENSXMAG00000018086	-	69	57.558	ENSPMGG00000012994	-	93	54.651	Periophthalmus_magnuspinnatus
ENSXMAG00000018086	-	99	46.442	ENSPMGG00000016600	alyref	90	48.679	Periophthalmus_magnuspinnatus
ENSXMAG00000018086	-	100	49.794	ENSPEMG00000016628	-	100	50.199	Peromyscus_maniculatus_bairdii
ENSXMAG00000018086	-	100	46.909	ENSPFOG00000022825	alyref	99	49.635	Poecilia_formosa
ENSXMAG00000018086	-	100	96.708	ENSPFOG00000017094	-	100	96.708	Poecilia_formosa
ENSXMAG00000018086	-	100	47.080	ENSPLAG00000006948	alyref	100	49.451	Poecilia_latipinna
ENSXMAG00000018086	-	100	96.708	ENSPLAG00000014380	-	100	96.708	Poecilia_latipinna
ENSXMAG00000018086	-	100	46.909	ENSPMEG00000003547	alyref	100	49.635	Poecilia_mexicana
ENSXMAG00000018086	-	100	96.708	ENSPMEG00000023039	-	100	96.708	Poecilia_mexicana
ENSXMAG00000018086	-	100	92.771	ENSPREG00000003649	-	100	92.771	Poecilia_reticulata
ENSXMAG00000018086	-	100	47.080	ENSPREG00000015795	alyref	100	50.909	Poecilia_reticulata
ENSXMAG00000018086	-	100	45.455	ENSPNYG00000017498	alyref	100	47.482	Pundamilia_nyererei
ENSXMAG00000018086	-	99	60.232	ENSPNYG00000002879	-	98	60.000	Pundamilia_nyererei
ENSXMAG00000018086	-	100	45.620	ENSPNAG00000002531	alyref	100	47.482	Pygocentrus_nattereri
ENSXMAG00000018086	-	72	54.054	ENSSBOG00000030924	-	84	56.216	Saimiri_boliviensis_boliviensis
ENSXMAG00000018086	-	99	41.852	ENSSHAG00000012866	-	100	40.530	Sarcophilus_harrisii
ENSXMAG00000018086	-	97	46.091	ENSSHAG00000000609	-	99	41.667	Sarcophilus_harrisii
ENSXMAG00000018086	-	72	53.514	ENSSFOG00015003678	alyref	83	53.333	Scleropages_formosus
ENSXMAG00000018086	-	75	57.368	ENSSFOG00015003923	alyref	71	55.135	Scleropages_formosus
ENSXMAG00000018086	-	100	66.920	ENSSMAG00000011169	-	100	65.399	Scophthalmus_maximus
ENSXMAG00000018086	-	100	47.653	ENSSMAG00000009283	alyref	100	49.643	Scophthalmus_maximus
ENSXMAG00000018086	-	100	46.377	ENSSDUG00000016158	alyref	100	48.746	Seriola_dumerili
ENSXMAG00000018086	-	100	45.126	ENSSLDG00000017803	alyref	100	48.214	Seriola_lalandi_dorsalis
ENSXMAG00000018086	-	99	67.063	ENSSPAG00000017028	-	96	66.667	Stegastes_partitus
ENSXMAG00000018086	-	100	58.397	ENSTRUG00000003051	-	100	57.252	Takifugu_rubripes
ENSXMAG00000018086	-	100	62.651	ENSTNIG00000014136	-	100	59.184	Tetraodon_nigroviridis
ENSXMAG00000018086	-	100	45.353	ENSTNIG00000011595	alyref	100	46.442	Tetraodon_nigroviridis
ENSXMAG00000018086	-	73	54.301	ENSVVUG00000000272	-	90	54.455	Vulpes_vulpes
ENSXMAG00000018086	-	99	47.388	ENSXCOG00000018047	alyref	98	47.955	Xiphophorus_couchianus
ENSXMAG00000018086	-	99	47.388	ENSXMAG00000012218	alyref	98	49.248	Xiphophorus_maculatus