EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018108 (Gene tree)
Gene ID: 102235910
Gene Symbol: lrpprc
Alias: fc13c04|im:7150924|im:7151572|wu:fc13c04|wu:fj38h02
Full Name: leucine rich pentatricopeptide repeat containing
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 73166 bases
Position: chr22:20641092-20714257
Accession: 102235910
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000018156	PPR	PF01535.20	6.8e-37	1	5
ENSXMAP00000018156	PPR	PF01535.20	6.8e-37	2	5
ENSXMAP00000018156	PPR	PF01535.20	6.8e-37	3	5
ENSXMAP00000018156	PPR	PF01535.20	6.8e-37	4	5
ENSXMAP00000018156	PPR	PF01535.20	6.8e-37	5	5

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018183	-	8405	XM_005804174	ENSXMAP00000018156	1415 (aa)	XP_005804231	M4AUL1

Gene Model

Click here to download ENSXMAG00000018108's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018108's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018108	lrpprc	99	74.542	ENSAPOG00000016610	lrpprc	99	74.542	Acanthochromis_polyacanthus
ENSXMAG00000018108	lrpprc	94	51.620	ENSAMEG00000005852	LRPPRC	98	51.620	Ailuropoda_melanoleuca
ENSXMAG00000018108	lrpprc	100	70.049	ENSACIG00000009604	lrpprc	99	70.049	Amphilophus_citrinellus
ENSXMAG00000018108	lrpprc	99	75.299	ENSAOCG00000005886	lrpprc	99	75.299	Amphiprion_ocellaris
ENSXMAG00000018108	lrpprc	99	71.086	ENSAPEG00000002937	lrpprc	98	71.086	Amphiprion_percula
ENSXMAG00000018108	lrpprc	91	72.353	ENSATEG00000010555	lrpprc	97	72.353	Anabas_testudineus
ENSXMAG00000018108	lrpprc	95	56.305	ENSACAG00000029278	LRPPRC	99	54.818	Anolis_carolinensis
ENSXMAG00000018108	lrpprc	99	50.529	ENSANAG00000027440	LRPPRC	97	54.784	Aotus_nancymaae
ENSXMAG00000018108	lrpprc	96	68.669	ENSACLG00000023712	lrpprc	92	77.378	Astatotilapia_calliptera
ENSXMAG00000018108	lrpprc	99	50.282	ENSCJAG00000000794	LRPPRC	97	54.494	Callithrix_jacchus
ENSXMAG00000018108	lrpprc	95	52.706	ENSCHIG00000020173	LRPPRC	99	51.372	Capra_hircus
ENSXMAG00000018108	lrpprc	94	41.580	ENSCAPG00000013631	LRPPRC	97	41.580	Cavia_aperea
ENSXMAG00000018108	lrpprc	86	50.082	ENSCPOG00000000204	LRPPRC	99	50.082	Cavia_porcellus
ENSXMAG00000018108	lrpprc	95	51.665	ENSCCAG00000031900	LRPPRC	96	51.665	Cebus_capucinus
ENSXMAG00000018108	lrpprc	95	51.668	ENSCATG00000014187	LRPPRC	87	58.442	Cercocebus_atys
ENSXMAG00000018108	lrpprc	99	49.335	ENSCLAG00000005203	LRPPRC	99	49.335	Chinchilla_lanigera
ENSXMAG00000018108	lrpprc	95	52.006	ENSCSAG00000013233	LRPPRC	96	52.006	Chlorocebus_sabaeus
ENSXMAG00000018108	lrpprc	84	50.333	ENSCHOG00000003631	LRPPRC	84	50.333	Choloepus_hoffmanni
ENSXMAG00000018108	lrpprc	95	49.778	ENSCANG00000034961	LRPPRC	99	59.783	Colobus_angolensis_palliatus
ENSXMAG00000018108	lrpprc	99	49.647	ENSCGRG00001016261	Lrpprc	99	49.753	Cricetulus_griseus_chok1gshd
ENSXMAG00000018108	lrpprc	99	49.647	ENSCGRG00000004072	Lrpprc	99	49.753	Cricetulus_griseus_crigri
ENSXMAG00000018108	lrpprc	99	51.536	ENSCSEG00000003850	lrpprc	96	58.594	Cynoglossus_semilaevis
ENSXMAG00000018108	lrpprc	99	83.652	ENSCVAG00000012967	lrpprc	99	83.652	Cyprinodon_variegatus
ENSXMAG00000018108	lrpprc	99	58.042	ENSDARG00000043970	lrpprc	98	58.042	Danio_rerio
ENSXMAG00000018108	lrpprc	77	42.325	ENSDNOG00000032336	-	95	42.325	Dasypus_novemcinctus
ENSXMAG00000018108	lrpprc	99	50.597	ENSDNOG00000012594	-	99	50.737	Dasypus_novemcinctus
ENSXMAG00000018108	lrpprc	98	50.536	ENSDORG00000012233	Lrpprc	96	51.325	Dipodomys_ordii
ENSXMAG00000018108	lrpprc	95	52.113	ENSETEG00000006657	LRPPRC	99	50.845	Echinops_telfairi
ENSXMAG00000018108	lrpprc	73	53.865	ENSEEUG00000012340	LRPPRC	80	53.865	Erinaceus_europaeus
ENSXMAG00000018108	lrpprc	95	58.646	ENSELUG00000012803	lrpprc	99	58.646	Esox_lucius
ENSXMAG00000018108	lrpprc	99	50.949	ENSFCAG00000013468	LRPPRC	99	51.122	Felis_catus
ENSXMAG00000018108	lrpprc	94	50.225	ENSFALG00000012738	LRPPRC	98	50.225	Ficedula_albicollis
ENSXMAG00000018108	lrpprc	93	50.716	ENSFDAG00000015328	LRPPRC	94	50.716	Fukomys_damarensis
ENSXMAG00000018108	lrpprc	99	80.113	ENSFHEG00000019604	lrpprc	99	80.113	Fundulus_heteroclitus
ENSXMAG00000018108	lrpprc	99	61.935	ENSGMOG00000008337	lrpprc	99	61.935	Gadus_morhua
ENSXMAG00000018108	lrpprc	100	93.569	ENSGAFG00000001455	lrpprc	100	93.569	Gambusia_affinis
ENSXMAG00000018108	lrpprc	99	69.894	ENSGACG00000010679	lrpprc	99	72.181	Gasterosteus_aculeatus
ENSXMAG00000018108	lrpprc	100	76.037	ENSHBUG00000000393	lrpprc	98	76.037	Haplochromis_burtoni
ENSXMAG00000018108	lrpprc	95	49.446	ENSHGLG00000006123	LRPPRC	96	49.446	Heterocephalus_glaber_female
ENSXMAG00000018108	lrpprc	59	47.687	ENSHGLG00100005960	-	99	47.687	Heterocephalus_glaber_male
ENSXMAG00000018108	lrpprc	98	70.354	ENSHCOG00000002107	lrpprc	100	70.354	Hippocampus_comes
ENSXMAG00000018108	lrpprc	99	62.062	ENSIPUG00000009406	lrpprc	99	62.062	Ictalurus_punctatus
ENSXMAG00000018108	lrpprc	95	50.803	ENSSTOG00000011185	LRPPRC	99	49.825	Ictidomys_tridecemlineatus
ENSXMAG00000018108	lrpprc	95	50.149	ENSJJAG00000020475	Lrpprc	99	48.942	Jaculus_jaculus
ENSXMAG00000018108	lrpprc	98	65.733	ENSKMAG00000003287	lrpprc	84	65.733	Kryptolebias_marmoratus
ENSXMAG00000018108	lrpprc	99	62.227	ENSLBEG00000023225	lrpprc	96	70.428	Labrus_bergylta
ENSXMAG00000018108	lrpprc	99	57.232	ENSLACG00000014030	LRPPRC	99	57.232	Latimeria_chalumnae
ENSXMAG00000018108	lrpprc	99	61.317	ENSLOCG00000016390	lrpprc	97	61.317	Lepisosteus_oculatus
ENSXMAG00000018108	lrpprc	95	50.739	ENSLAFG00000008614	LRPPRC	99	49.615	Loxodonta_africana
ENSXMAG00000018108	lrpprc	95	51.668	ENSMFAG00000041560	LRPPRC	99	58.929	Macaca_fascicularis
ENSXMAG00000018108	lrpprc	95	51.037	ENSMMUG00000019841	LRPPRC	99	58.929	Macaca_mulatta
ENSXMAG00000018108	lrpprc	95	51.668	ENSMNEG00000031613	LRPPRC	96	51.630	Macaca_nemestrina
ENSXMAG00000018108	lrpprc	98	63.597	ENSMAMG00000021835	lrpprc	98	63.636	Mastacembelus_armatus
ENSXMAG00000018108	lrpprc	100	75.896	ENSMZEG00005027379	lrpprc	99	75.896	Maylandia_zebra
ENSXMAG00000018108	lrpprc	99	49.471	ENSMAUG00000012118	Lrpprc	99	50.219	Mesocricetus_auratus
ENSXMAG00000018108	lrpprc	99	50.528	ENSMICG00000010486	LRPPRC	98	53.148	Microcebus_murinus
ENSXMAG00000018108	lrpprc	99	50.317	ENSMOCG00000006048	Lrpprc	99	50.317	Microtus_ochrogaster
ENSXMAG00000018108	lrpprc	99	66.360	ENSMMOG00000007830	lrpprc	94	75.342	Mola_mola
ENSXMAG00000018108	lrpprc	95	51.584	ENSMODG00000000648	LRPPRC	99	51.584	Monodelphis_domestica
ENSXMAG00000018108	lrpprc	100	68.592	ENSMALG00000001271	lrpprc	99	68.592	Monopterus_albus
ENSXMAG00000018108	lrpprc	94	53.859	ENSMPUG00000011800	LRPPRC	95	53.859	Mustela_putorius_furo
ENSXMAG00000018108	lrpprc	95	51.752	ENSMLUG00000010575	LRPPRC	97	51.752	Myotis_lucifugus
ENSXMAG00000018108	lrpprc	99	49.859	ENSNGAG00000013069	Lrpprc	99	49.859	Nannospalax_galili
ENSXMAG00000018108	lrpprc	94	67.636	ENSNBRG00000013202	lrpprc	92	76.321	Neolamprologus_brichardi
ENSXMAG00000018108	lrpprc	99	49.649	ENSNLEG00000016782	LRPPRC	98	53.704	Nomascus_leucogenys
ENSXMAG00000018108	lrpprc	87	54.098	ENSOPRG00000016774	LRPPRC	91	45.608	Ochotona_princeps
ENSXMAG00000018108	lrpprc	95	50.182	ENSODEG00000011211	LRPPRC	97	50.182	Octodon_degus
ENSXMAG00000018108	lrpprc	100	75.896	ENSONIG00000000917	lrpprc	99	75.337	Oreochromis_niloticus
ENSXMAG00000018108	lrpprc	54	47.552	ENSOANG00000014670	-	100	47.552	Ornithorhynchus_anatinus
ENSXMAG00000018108	lrpprc	99	50.383	ENSOCUG00000015046	LRPPRC	95	50.523	Oryctolagus_cuniculus
ENSXMAG00000018108	lrpprc	99	70.509	ENSORLG00000004605	lrpprc	96	70.509	Oryzias_latipes
ENSXMAG00000018108	lrpprc	91	74.536	ENSORLG00020012536	lrpprc	99	74.701	Oryzias_latipes_hni
ENSXMAG00000018108	lrpprc	99	68.458	ENSORLG00015018270	lrpprc	99	68.317	Oryzias_latipes_hsok
ENSXMAG00000018108	lrpprc	95	51.166	ENSOGAG00000012798	LRPPRC	97	51.166	Otolemur_garnettii
ENSXMAG00000018108	lrpprc	95	52.780	ENSOARG00000006522	LRPPRC	97	52.187	Ovis_aries
ENSXMAG00000018108	lrpprc	95	50.482	ENSPPAG00000040876	LRPPRC	98	52.865	Pan_paniscus
ENSXMAG00000018108	lrpprc	99	50.772	ENSPPRG00000006578	LRPPRC	99	50.772	Panthera_pardus
ENSXMAG00000018108	lrpprc	95	52.332	ENSPTIG00000000933	LRPPRC	96	52.332	Panthera_tigris_altaica
ENSXMAG00000018108	lrpprc	99	50.106	ENSPTRG00000011880	LRPPRC	98	53.704	Pan_troglodytes
ENSXMAG00000018108	lrpprc	95	51.520	ENSPANG00000020731	LRPPRC	87	58.225	Papio_anubis
ENSXMAG00000018108	lrpprc	89	62.108	ENSPKIG00000022232	lrpprc	97	58.140	Paramormyrops_kingsleyae
ENSXMAG00000018108	lrpprc	61	54.095	ENSPSIG00000006830	-	98	54.095	Pelodiscus_sinensis
ENSXMAG00000018108	lrpprc	66	60.981	ENSPMGG00000016597	lrpprc	96	60.981	Periophthalmus_magnuspinnatus
ENSXMAG00000018108	lrpprc	93	46.913	ENSPMAG00000002147	lrpprc	99	46.913	Petromyzon_marinus
ENSXMAG00000018108	lrpprc	100	89.682	ENSPFOG00000011227	lrpprc	100	89.682	Poecilia_formosa
ENSXMAG00000018108	lrpprc	100	89.258	ENSPLAG00000004018	lrpprc	100	89.258	Poecilia_latipinna
ENSXMAG00000018108	lrpprc	100	89.399	ENSPMEG00000016425	lrpprc	100	89.399	Poecilia_mexicana
ENSXMAG00000018108	lrpprc	100	89.399	ENSPREG00000003662	lrpprc	100	89.399	Poecilia_reticulata
ENSXMAG00000018108	lrpprc	57	47.102	ENSPPYG00000029532	-	99	47.401	Pongo_abelii
ENSXMAG00000018108	lrpprc	77	53.475	ENSPCAG00000001430	LRPPRC	84	50.594	Procavia_capensis
ENSXMAG00000018108	lrpprc	95	49.598	ENSPVAG00000002007	LRPPRC	97	49.598	Pteropus_vampyrus
ENSXMAG00000018108	lrpprc	100	66.388	ENSPNYG00000000756	lrpprc	90	76.858	Pundamilia_nyererei
ENSXMAG00000018108	lrpprc	99	63.751	ENSPNAG00000002895	lrpprc	99	63.751	Pygocentrus_nattereri
ENSXMAG00000018108	lrpprc	99	49.788	ENSRNOG00000005877	Lrpprc	99	49.788	Rattus_norvegicus
ENSXMAG00000018108	lrpprc	99	49.157	ENSRBIG00000031552	LRPPRC	99	49.370	Rhinopithecus_bieti
ENSXMAG00000018108	lrpprc	99	50.282	ENSSBOG00000011807	LRPPRC	97	54.120	Saimiri_boliviensis_boliviensis
ENSXMAG00000018108	lrpprc	95	50.703	ENSSHAG00000018725	LRPPRC	99	50.703	Sarcophilus_harrisii
ENSXMAG00000018108	lrpprc	99	55.168	ENSSFOG00015001042	lrpprc	99	55.168	Scleropages_formosus
ENSXMAG00000018108	lrpprc	99	72.207	ENSSDUG00000019062	lrpprc	99	72.207	Seriola_dumerili
ENSXMAG00000018108	lrpprc	99	53.467	ENSSLDG00000023028	lrpprc	99	53.606	Seriola_lalandi_dorsalis
ENSXMAG00000018108	lrpprc	90	49.307	ENSSARG00000000426	LRPPRC	99	49.307	Sorex_araneus
ENSXMAG00000018108	lrpprc	99	65.205	ENSSPAG00000000162	lrpprc	99	65.618	Stegastes_partitus
ENSXMAG00000018108	lrpprc	99	50.525	ENSSSCG00000008452	LRPPRC	99	50.525	Sus_scrofa
ENSXMAG00000018108	lrpprc	93	48.377	ENSTGUG00000003759	LRPPRC	99	48.377	Taeniopygia_guttata
ENSXMAG00000018108	lrpprc	100	67.695	ENSTRUG00000008409	lrpprc	96	67.574	Takifugu_rubripes
ENSXMAG00000018108	lrpprc	99	66.196	ENSTNIG00000007470	lrpprc	99	66.963	Tetraodon_nigroviridis
ENSXMAG00000018108	lrpprc	95	50.000	ENSTTRG00000006403	LRPPRC	99	49.298	Tursiops_truncatus
ENSXMAG00000018108	lrpprc	95	49.555	ENSVPAG00000008993	LRPPRC	99	49.555	Vicugna_pacos
ENSXMAG00000018108	lrpprc	94	57.196	ENSXETG00000009296	lrpprc	96	57.398	Xenopus_tropicalis
ENSXMAG00000018108	lrpprc	99	87.189	ENSXCOG00000013343	lrpprc	100	84.515	Xiphophorus_couchianus