EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018315 (Gene tree)
Gene ID: 102233937
Gene Symbol: srp54
Alias: zgc:55842|zgc:85713
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 19409 bases
Position: chr19:20353816-20373224
Accession: 102233937
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000018384	SRP54	PF00448.22	5.7e-77	1	1
ENSXMAP00000038123	SRP54	PF00448.22	5.7e-77	1	1
ENSXMAP00000018384	SRP54_N	PF02881.19	4.8e-20	1	1
ENSXMAP00000038123	SRP54_N	PF02881.19	4.8e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000036682	-	2079	XM_023353124	ENSXMAP00000038123	504 (aa)	XP_023208892	UPI000293970C
ENSXMAT00000018411	-	2169	XM_023353121	ENSXMAP00000018384	504 (aa)	XP_023208889	M4AV89

Gene Model

Click here to download ENSXMAG00000018315's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03060	Protein export	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018315's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018315	srp54	100	96.032	ENSG00000100883	SRP54	100	97.674	Homo_sapiens
ENSXMAG00000018315	srp54	100	99.802	ENSAPOG00000011314	srp54	100	99.802	Acanthochromis_polyacanthus
ENSXMAG00000018315	srp54	100	96.032	ENSAMEG00000015544	SRP54	100	96.032	Ailuropoda_melanoleuca
ENSXMAG00000018315	srp54	89	97.996	ENSACIG00000022831	srp54	97	97.996	Amphilophus_citrinellus
ENSXMAG00000018315	srp54	100	99.802	ENSAOCG00000019401	srp54	100	99.802	Amphiprion_ocellaris
ENSXMAG00000018315	srp54	100	99.802	ENSAPEG00000001977	srp54	100	99.802	Amphiprion_percula
ENSXMAG00000018315	srp54	100	99.603	ENSATEG00000013877	srp54	100	99.603	Anabas_testudineus
ENSXMAG00000018315	srp54	94	95.359	ENSAPLG00000010125	SRP54	95	95.359	Anas_platyrhynchos
ENSXMAG00000018315	srp54	65	79.758	ENSACAG00000001124	-	100	79.758	Anolis_carolinensis
ENSXMAG00000018315	srp54	86	92.396	ENSACAG00000010631	-	100	92.396	Anolis_carolinensis
ENSXMAG00000018315	srp54	100	95.437	ENSACAG00000002103	-	100	95.437	Anolis_carolinensis
ENSXMAG00000018315	srp54	100	96.032	ENSANAG00000022133	SRP54	100	96.032	Aotus_nancymaae
ENSXMAG00000018315	srp54	100	99.405	ENSACLG00000015866	srp54	100	99.405	Astatotilapia_calliptera
ENSXMAG00000018315	srp54	100	97.817	ENSAMXG00000032669	SRP54	100	97.817	Astyanax_mexicanus
ENSXMAG00000018315	srp54	100	96.032	ENSBTAG00000019085	SRP54	100	96.032	Bos_taurus
ENSXMAG00000018315	srp54	98	73.092	WBGene00009012	F21D5.7	100	73.092	Caenorhabditis_elegans
ENSXMAG00000018315	srp54	100	96.032	ENSCJAG00000006581	SRP54	100	96.032	Callithrix_jacchus
ENSXMAG00000018315	srp54	100	96.032	ENSCAFG00000013331	SRP54	100	96.032	Canis_familiaris
ENSXMAG00000018315	srp54	100	96.032	ENSCAFG00020023427	SRP54	100	96.032	Canis_lupus_dingo
ENSXMAG00000018315	srp54	100	96.032	ENSCHIG00000026345	SRP54	100	96.032	Capra_hircus
ENSXMAG00000018315	srp54	94	84.421	ENSTSYG00000035333	-	93	84.421	Carlito_syrichta
ENSXMAG00000018315	srp54	100	95.833	ENSTSYG00000002680	-	100	95.833	Carlito_syrichta
ENSXMAG00000018315	srp54	94	61.837	ENSCAPG00000008780	SRP54	100	61.837	Cavia_aperea
ENSXMAG00000018315	srp54	100	95.635	ENSCPOG00000003691	SRP54	100	95.635	Cavia_porcellus
ENSXMAG00000018315	srp54	90	95.476	ENSCCAG00000024179	SRP54	100	95.704	Cebus_capucinus
ENSXMAG00000018315	srp54	100	96.032	ENSCATG00000034083	SRP54	100	96.032	Cercocebus_atys
ENSXMAG00000018315	srp54	100	96.032	ENSCLAG00000015076	SRP54	100	96.032	Chinchilla_lanigera
ENSXMAG00000018315	srp54	100	96.032	ENSCSAG00000015575	SRP54	100	96.032	Chlorocebus_sabaeus
ENSXMAG00000018315	srp54	95	85.031	ENSCHOG00000008986	SRP54	100	85.031	Choloepus_hoffmanni
ENSXMAG00000018315	srp54	100	96.032	ENSCPBG00000026195	SRP54	100	96.032	Chrysemys_picta_bellii
ENSXMAG00000018315	srp54	100	82.738	ENSCING00000007380	-	100	82.738	Ciona_intestinalis
ENSXMAG00000018315	srp54	100	96.032	ENSCANG00000028532	SRP54	100	96.032	Colobus_angolensis_palliatus
ENSXMAG00000018315	srp54	100	96.032	ENSCGRG00001009525	-	100	96.032	Cricetulus_griseus_chok1gshd
ENSXMAG00000018315	srp54	76	96.364	ENSCGRG00000009453	-	89	96.364	Cricetulus_griseus_crigri
ENSXMAG00000018315	srp54	100	98.810	ENSCSEG00000012392	srp54	100	98.810	Cynoglossus_semilaevis
ENSXMAG00000018315	srp54	100	99.802	ENSCVAG00000010395	srp54	100	99.802	Cyprinodon_variegatus
ENSXMAG00000018315	srp54	100	98.611	ENSDARG00000098367	srp54	100	98.611	Danio_rerio
ENSXMAG00000018315	srp54	100	96.032	ENSDNOG00000032525	SRP54	100	96.032	Dasypus_novemcinctus
ENSXMAG00000018315	srp54	89	80.752	ENSDORG00000005159	-	98	80.752	Dipodomys_ordii
ENSXMAG00000018315	srp54	96	79.175	FBgn0010747	Srp54k	98	78.715	Drosophila_melanogaster
ENSXMAG00000018315	srp54	100	94.841	ENSETEG00000016307	-	100	94.841	Echinops_telfairi
ENSXMAG00000018315	srp54	83	56.220	ENSETEG00000012102	-	99	56.220	Echinops_telfairi
ENSXMAG00000018315	srp54	100	88.492	ENSEBUG00000009437	-	100	88.492	Eptatretus_burgeri
ENSXMAG00000018315	srp54	100	96.032	ENSEASG00005002057	SRP54	100	96.032	Equus_asinus_asinus
ENSXMAG00000018315	srp54	99	95.783	ENSECAG00000018042	SRP54	98	95.783	Equus_caballus
ENSXMAG00000018315	srp54	100	80.159	ENSEEUG00000001511	SRP54	100	80.159	Erinaceus_europaeus
ENSXMAG00000018315	srp54	100	98.214	ENSELUG00000003395	srp54	100	98.214	Esox_lucius
ENSXMAG00000018315	srp54	100	95.833	ENSFCAG00000032033	SRP54	100	95.833	Felis_catus
ENSXMAG00000018315	srp54	100	95.635	ENSFALG00000005995	SRP54	100	95.635	Ficedula_albicollis
ENSXMAG00000018315	srp54	100	96.032	ENSFDAG00000016767	SRP54	100	96.032	Fukomys_damarensis
ENSXMAG00000018315	srp54	100	99.405	ENSFHEG00000004263	srp54	100	99.405	Fundulus_heteroclitus
ENSXMAG00000018315	srp54	95	92.887	ENSGMOG00000011391	srp54	100	92.887	Gadus_morhua
ENSXMAG00000018315	srp54	100	95.635	ENSGALG00000023135	SRP54	100	95.635	Gallus_gallus
ENSXMAG00000018315	srp54	100	100.000	ENSGAFG00000011586	srp54	100	100.000	Gambusia_affinis
ENSXMAG00000018315	srp54	100	99.008	ENSGACG00000004181	srp54	100	99.008	Gasterosteus_aculeatus
ENSXMAG00000018315	srp54	100	96.032	ENSGAGG00000014766	SRP54	100	96.032	Gopherus_agassizii
ENSXMAG00000018315	srp54	100	96.032	ENSGGOG00000002926	SRP54	100	96.032	Gorilla_gorilla
ENSXMAG00000018315	srp54	100	99.405	ENSHBUG00000005678	srp54	100	99.405	Haplochromis_burtoni
ENSXMAG00000018315	srp54	100	96.032	ENSHGLG00000002850	SRP54	100	96.032	Heterocephalus_glaber_female
ENSXMAG00000018315	srp54	100	66.733	ENSHGLG00100007281	-	100	66.733	Heterocephalus_glaber_male
ENSXMAG00000018315	srp54	100	96.032	ENSHGLG00100005263	SRP54	100	96.032	Heterocephalus_glaber_male
ENSXMAG00000018315	srp54	100	97.619	ENSHCOG00000021127	srp54	100	97.619	Hippocampus_comes
ENSXMAG00000018315	srp54	100	97.817	ENSIPUG00000001420	srp54	100	97.817	Ictalurus_punctatus
ENSXMAG00000018315	srp54	100	96.032	ENSSTOG00000016023	SRP54	100	96.032	Ictidomys_tridecemlineatus
ENSXMAG00000018315	srp54	100	91.270	ENSJJAG00000013417	-	100	91.270	Jaculus_jaculus
ENSXMAG00000018315	srp54	87	74.091	ENSJJAG00000016404	-	100	74.091	Jaculus_jaculus
ENSXMAG00000018315	srp54	100	99.405	ENSKMAG00000007707	srp54	100	99.405	Kryptolebias_marmoratus
ENSXMAG00000018315	srp54	100	99.603	ENSLBEG00000021122	srp54	100	99.603	Labrus_bergylta
ENSXMAG00000018315	srp54	100	99.603	ENSLBEG00000018690	srp54	100	99.603	Labrus_bergylta
ENSXMAG00000018315	srp54	100	95.635	ENSLACG00000017890	SRP54	100	95.635	Latimeria_chalumnae
ENSXMAG00000018315	srp54	100	98.214	ENSLOCG00000009440	srp54	100	98.214	Lepisosteus_oculatus
ENSXMAG00000018315	srp54	100	96.032	ENSLAFG00000012007	SRP54	100	96.032	Loxodonta_africana
ENSXMAG00000018315	srp54	100	96.032	ENSMFAG00000044371	SRP54	100	96.032	Macaca_fascicularis
ENSXMAG00000018315	srp54	100	96.032	ENSMMUG00000015073	FAM177A1	100	96.032	Macaca_mulatta
ENSXMAG00000018315	srp54	100	96.032	ENSMNEG00000006947	SRP54	100	96.032	Macaca_nemestrina
ENSXMAG00000018315	srp54	100	96.032	ENSMLEG00000042251	SRP54	100	96.032	Mandrillus_leucophaeus
ENSXMAG00000018315	srp54	100	99.405	ENSMAMG00000004803	srp54	100	99.405	Mastacembelus_armatus
ENSXMAG00000018315	srp54	100	99.405	ENSMZEG00005027528	srp54	100	99.405	Maylandia_zebra
ENSXMAG00000018315	srp54	100	91.107	ENSMGAG00000012481	SRP54	100	91.107	Meleagris_gallopavo
ENSXMAG00000018315	srp54	100	96.230	ENSMAUG00000014447	-	100	96.230	Mesocricetus_auratus
ENSXMAG00000018315	srp54	100	96.032	ENSMICG00000010270	SRP54	100	96.032	Microcebus_murinus
ENSXMAG00000018315	srp54	87	95.909	ENSMOCG00000000948	-	100	95.909	Microtus_ochrogaster
ENSXMAG00000018315	srp54	90	96.916	ENSMMOG00000020303	srp54	99	96.916	Mola_mola
ENSXMAG00000018315	srp54	100	96.032	ENSMODG00000012925	-	100	96.032	Monodelphis_domestica
ENSXMAG00000018315	srp54	100	96.032	ENSMODG00000023150	-	100	96.032	Monodelphis_domestica
ENSXMAG00000018315	srp54	88	98.871	ENSMALG00000009163	srp54	98	98.871	Monopterus_albus
ENSXMAG00000018315	srp54	100	96.230	MGP_CAROLIEiJ_G0017754	-	100	96.230	Mus_caroli
ENSXMAG00000018315	srp54	100	95.437	ENSMUSG00000079108	Srp54c	100	95.437	Mus_musculus
ENSXMAG00000018315	srp54	100	96.230	ENSMUSG00000073079	Srp54a	100	97.273	Mus_musculus
ENSXMAG00000018315	srp54	100	96.230	ENSMUSG00000112449	Srp54b	100	96.230	Mus_musculus
ENSXMAG00000018315	srp54	100	96.230	MGP_PahariEiJ_G0029510	-	100	96.230	Mus_pahari
ENSXMAG00000018315	srp54	100	96.032	ENSMPUG00000016302	SRP54	100	96.032	Mustela_putorius_furo
ENSXMAG00000018315	srp54	100	95.437	ENSMLUG00000008958	SRP54	100	95.437	Myotis_lucifugus
ENSXMAG00000018315	srp54	100	86.905	ENSNGAG00000019806	-	100	86.905	Nannospalax_galili
ENSXMAG00000018315	srp54	87	99.318	ENSNBRG00000006000	srp54	100	99.318	Neolamprologus_brichardi
ENSXMAG00000018315	srp54	100	96.032	ENSNLEG00000003496	SRP54	100	96.032	Nomascus_leucogenys
ENSXMAG00000018315	srp54	67	98.214	ENSMEUG00000000138	-	76	98.214	Notamacropus_eugenii
ENSXMAG00000018315	srp54	58	96.721	ENSOPRG00000014502	-	60	96.721	Ochotona_princeps
ENSXMAG00000018315	srp54	100	96.032	ENSODEG00000004865	SRP54	100	96.032	Octodon_degus
ENSXMAG00000018315	srp54	100	99.405	ENSONIG00000011768	srp54	100	99.405	Oreochromis_niloticus
ENSXMAG00000018315	srp54	100	96.032	ENSOANG00000014051	SRP54	100	96.032	Ornithorhynchus_anatinus
ENSXMAG00000018315	srp54	100	95.437	ENSOCUG00000007838	SRP54	100	95.437	Oryctolagus_cuniculus
ENSXMAG00000018315	srp54	100	99.206	ENSORLG00000010027	srp54	100	99.206	Oryzias_latipes
ENSXMAG00000018315	srp54	100	99.206	ENSORLG00020001878	srp54	100	99.206	Oryzias_latipes_hni
ENSXMAG00000018315	srp54	100	99.206	ENSORLG00015021866	srp54	100	99.206	Oryzias_latipes_hsok
ENSXMAG00000018315	srp54	100	99.008	ENSOMEG00000020952	srp54	100	99.008	Oryzias_melastigma
ENSXMAG00000018315	srp54	100	96.032	ENSOGAG00000012188	SRP54	100	96.032	Otolemur_garnettii
ENSXMAG00000018315	srp54	100	96.032	ENSOARG00000007160	SRP54	100	96.032	Ovis_aries
ENSXMAG00000018315	srp54	100	96.032	ENSPPAG00000017434	SRP54	100	96.032	Pan_paniscus
ENSXMAG00000018315	srp54	100	95.040	ENSPPRG00000014047	SRP54	100	95.040	Panthera_pardus
ENSXMAG00000018315	srp54	100	95.833	ENSPTIG00000000744	SRP54	96	95.833	Panthera_tigris_altaica
ENSXMAG00000018315	srp54	100	96.032	ENSPTRG00000006259	FAM177A1	100	96.032	Pan_troglodytes
ENSXMAG00000018315	srp54	100	96.032	ENSPANG00000023853	SRP54	100	96.032	Papio_anubis
ENSXMAG00000018315	srp54	100	98.016	ENSPKIG00000001953	srp54	100	98.016	Paramormyrops_kingsleyae
ENSXMAG00000018315	srp54	100	95.833	ENSPSIG00000006476	SRP54	100	95.833	Pelodiscus_sinensis
ENSXMAG00000018315	srp54	91	96.522	ENSPMGG00000004127	srp54	99	96.522	Periophthalmus_magnuspinnatus
ENSXMAG00000018315	srp54	100	84.127	ENSPEMG00000019634	-	100	84.127	Peromyscus_maniculatus_bairdii
ENSXMAG00000018315	srp54	100	90.476	ENSPMAG00000006078	-	100	90.476	Petromyzon_marinus
ENSXMAG00000018315	srp54	100	96.032	ENSPCIG00000016175	SRP54	100	96.032	Phascolarctos_cinereus
ENSXMAG00000018315	srp54	100	100.000	ENSPFOG00000008870	srp54	100	100.000	Poecilia_formosa
ENSXMAG00000018315	srp54	100	100.000	ENSPLAG00000009889	srp54	100	100.000	Poecilia_latipinna
ENSXMAG00000018315	srp54	100	100.000	ENSPMEG00000008601	srp54	100	100.000	Poecilia_mexicana
ENSXMAG00000018315	srp54	100	100.000	ENSPREG00000004505	srp54	100	100.000	Poecilia_reticulata
ENSXMAG00000018315	srp54	100	91.071	ENSPPYG00000005739	SRP54	100	91.071	Pongo_abelii
ENSXMAG00000018315	srp54	100	92.460	ENSPCAG00000006268	SRP54	100	92.460	Procavia_capensis
ENSXMAG00000018315	srp54	100	94.059	ENSPCOG00000022473	SRP54	100	94.059	Propithecus_coquereli
ENSXMAG00000018315	srp54	63	97.872	ENSPVAG00000010056	SRP54	82	97.872	Pteropus_vampyrus
ENSXMAG00000018315	srp54	100	99.405	ENSPNYG00000009717	srp54	100	99.405	Pundamilia_nyererei
ENSXMAG00000018315	srp54	100	98.016	ENSPNAG00000008544	srp54	100	98.016	Pygocentrus_nattereri
ENSXMAG00000018315	srp54	100	96.032	ENSRNOG00000032776	Srp54a	100	96.032	Rattus_norvegicus
ENSXMAG00000018315	srp54	100	96.032	ENSRROG00000041292	SRP54	100	96.032	Rhinopithecus_roxellana
ENSXMAG00000018315	srp54	86	51.701	YPR088C	SRP54	95	47.318	Saccharomyces_cerevisiae
ENSXMAG00000018315	srp54	94	95.781	ENSSBOG00000035145	SRP54	100	95.781	Saimiri_boliviensis_boliviensis
ENSXMAG00000018315	srp54	68	95.044	ENSSHAG00000000671	SRP54	100	95.044	Sarcophilus_harrisii
ENSXMAG00000018315	srp54	100	98.413	ENSSFOG00015013920	srp54	100	98.413	Scleropages_formosus
ENSXMAG00000018315	srp54	100	93.258	ENSSMAG00000002441	srp54	100	93.258	Scophthalmus_maximus
ENSXMAG00000018315	srp54	100	99.206	ENSSDUG00000018586	srp54	100	99.206	Seriola_dumerili
ENSXMAG00000018315	srp54	100	99.405	ENSSLDG00000010476	srp54	100	99.405	Seriola_lalandi_dorsalis
ENSXMAG00000018315	srp54	100	96.032	ENSSARG00000002744	SRP54	100	96.032	Sorex_araneus
ENSXMAG00000018315	srp54	100	96.032	ENSSPUG00000013101	SRP54	100	96.032	Sphenodon_punctatus
ENSXMAG00000018315	srp54	100	99.802	ENSSPAG00000002354	srp54	100	99.802	Stegastes_partitus
ENSXMAG00000018315	srp54	100	96.032	ENSSSCG00000001955	SRP54	100	96.032	Sus_scrofa
ENSXMAG00000018315	srp54	94	95.359	ENSTGUG00000011945	-	95	95.359	Taeniopygia_guttata
ENSXMAG00000018315	srp54	100	98.611	ENSTRUG00000007057	srp54	100	98.611	Takifugu_rubripes
ENSXMAG00000018315	srp54	100	97.817	ENSTNIG00000002589	srp54	100	97.817	Tetraodon_nigroviridis
ENSXMAG00000018315	srp54	89	87.248	ENSTBEG00000011409	SRP54	100	87.248	Tupaia_belangeri
ENSXMAG00000018315	srp54	100	86.905	ENSTTRG00000000928	SRP54	100	86.905	Tursiops_truncatus
ENSXMAG00000018315	srp54	52	96.947	ENSUAMG00000012385	SRP54	100	96.947	Ursus_americanus
ENSXMAG00000018315	srp54	100	96.032	ENSUMAG00000011234	SRP54	100	96.032	Ursus_maritimus
ENSXMAG00000018315	srp54	94	95.570	ENSVPAG00000005668	SRP54	100	95.570	Vicugna_pacos
ENSXMAG00000018315	srp54	100	96.032	ENSVVUG00000019962	SRP54	100	96.032	Vulpes_vulpes
ENSXMAG00000018315	srp54	100	81.262	ENSXETG00000012290	srp54	100	81.262	Xenopus_tropicalis
ENSXMAG00000018315	srp54	88	100.000	ENSXCOG00000004658	srp54	96	100.000	Xiphophorus_couchianus