EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018320 (Gene tree)
Gene ID: 102228523
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 21407 bases
Position: chr6:9074205-9095611
Accession: 102228523
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000018378	XRN_N	PF03159.18	1.8e-96	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018405	-	4680	XM_014475993	ENSXMAP00000018378	1559 (aa)	XP_014331479	M4AV83

Gene Model

Click here to download ENSXMAG00000018320's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018320's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018320	xrn1	98	72.046	ENSG00000114127	XRN1	96	95.146	Homo_sapiens
ENSXMAG00000018320	xrn1	98	87.573	ENSAPOG00000000622	xrn1	93	87.406	Acanthochromis_polyacanthus
ENSXMAG00000018320	xrn1	94	71.789	ENSAMEG00000012538	XRN1	93	71.707	Ailuropoda_melanoleuca
ENSXMAG00000018320	xrn1	98	86.405	ENSACIG00000001057	xrn1	93	86.323	Amphilophus_citrinellus
ENSXMAG00000018320	xrn1	98	86.771	ENSAOCG00000014097	xrn1	94	85.644	Amphiprion_ocellaris
ENSXMAG00000018320	xrn1	98	87.099	ENSAPEG00000006620	xrn1	94	86.803	Amphiprion_percula
ENSXMAG00000018320	xrn1	100	77.009	ENSATEG00000009752	xrn1	100	76.870	Anabas_testudineus
ENSXMAG00000018320	xrn1	96	71.973	ENSAPLG00000004905	XRN1	90	71.725	Anas_platyrhynchos
ENSXMAG00000018320	xrn1	99	71.199	ENSACAG00000004985	XRN1	89	70.796	Anolis_carolinensis
ENSXMAG00000018320	xrn1	98	72.209	ENSANAG00000029013	XRN1	99	72.751	Aotus_nancymaae
ENSXMAG00000018320	xrn1	98	86.148	ENSACLG00000004806	xrn1	91	86.066	Astatotilapia_calliptera
ENSXMAG00000018320	xrn1	99	75.632	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSXMAG00000018320	xrn1	98	71.964	ENSBTAG00000011524	XRN1	93	71.801	Bos_taurus
ENSXMAG00000018320	xrn1	75	37.128	WBGene00012730	xrn-1	73	62.735	Caenorhabditis_elegans
ENSXMAG00000018320	xrn1	98	72.046	ENSCJAG00000001872	XRN1	92	71.964	Callithrix_jacchus
ENSXMAG00000018320	xrn1	93	72.876	ENSCAFG00000007783	XRN1	92	72.467	Canis_familiaris
ENSXMAG00000018320	xrn1	93	72.453	ENSCAFG00020009120	XRN1	99	75.000	Canis_lupus_dingo
ENSXMAG00000018320	xrn1	98	71.883	ENSCHIG00000019192	XRN1	90	71.720	Capra_hircus
ENSXMAG00000018320	xrn1	98	71.883	ENSTSYG00000002705	XRN1	92	71.720	Carlito_syrichta
ENSXMAG00000018320	xrn1	52	86.047	ENSCAPG00000004604	-	94	86.047	Cavia_aperea
ENSXMAG00000018320	xrn1	98	72.127	ENSCCAG00000034800	XRN1	99	76.630	Cebus_capucinus
ENSXMAG00000018320	xrn1	98	71.941	ENSCATG00000041794	XRN1	92	71.860	Cercocebus_atys
ENSXMAG00000018320	xrn1	100	69.400	ENSCLAG00000001451	XRN1	99	77.424	Chinchilla_lanigera
ENSXMAG00000018320	xrn1	92	71.964	ENSCSAG00000011265	XRN1	92	71.883	Chlorocebus_sabaeus
ENSXMAG00000018320	xrn1	58	94.805	ENSCHOG00000013961	-	52	94.805	Choloepus_hoffmanni
ENSXMAG00000018320	xrn1	74	51.022	ENSCSAVG00000008584	-	93	50.508	Ciona_savignyi
ENSXMAG00000018320	xrn1	92	72.127	ENSCANG00000037495	XRN1	99	76.630	Colobus_angolensis_palliatus
ENSXMAG00000018320	xrn1	98	71.556	ENSCGRG00001019411	Xrn1	99	76.630	Cricetulus_griseus_chok1gshd
ENSXMAG00000018320	xrn1	98	71.556	ENSCGRG00000012464	Xrn1	99	76.630	Cricetulus_griseus_crigri
ENSXMAG00000018320	xrn1	98	78.753	ENSCSEG00000021285	xrn1	94	98.077	Cynoglossus_semilaevis
ENSXMAG00000018320	xrn1	71	92.015	ENSCVAG00000013089	xrn1	99	92.105	Cyprinodon_variegatus
ENSXMAG00000018320	xrn1	99	78.278	ENSDARG00000091652	xrn1	98	79.704	Danio_rerio
ENSXMAG00000018320	xrn1	98	71.801	ENSDORG00000013833	Xrn1	92	71.801	Dipodomys_ordii
ENSXMAG00000018320	xrn1	73	42.190	FBgn0020261	pcm	71	42.190	Drosophila_melanogaster
ENSXMAG00000018320	xrn1	82	67.568	ENSETEG00000003978	XRN1	80	68.548	Echinops_telfairi
ENSXMAG00000018320	xrn1	92	71.964	ENSEASG00005002687	XRN1	99	76.948	Equus_asinus_asinus
ENSXMAG00000018320	xrn1	92	71.883	ENSECAG00000008301	XRN1	92	71.801	Equus_caballus
ENSXMAG00000018320	xrn1	83	71.078	ENSEEUG00000011323	XRN1	79	71.078	Erinaceus_europaeus
ENSXMAG00000018320	xrn1	100	75.606	ENSELUG00000000169	xrn1	96	75.530	Esox_lucius
ENSXMAG00000018320	xrn1	92	67.427	ENSFCAG00000027589	XRN1	99	78.022	Felis_catus
ENSXMAG00000018320	xrn1	99	71.898	ENSFALG00000007021	XRN1	89	71.417	Ficedula_albicollis
ENSXMAG00000018320	xrn1	98	71.964	ENSFDAG00000020494	XRN1	99	77.266	Fukomys_damarensis
ENSXMAG00000018320	xrn1	92	76.190	ENSGMOG00000006396	xrn1	84	76.023	Gadus_morhua
ENSXMAG00000018320	xrn1	99	71.815	ENSGALG00000002706	XRN1	90	71.417	Gallus_gallus
ENSXMAG00000018320	xrn1	98	85.070	ENSGACG00000014328	xrn1	90	85.070	Gasterosteus_aculeatus
ENSXMAG00000018320	xrn1	92	71.566	ENSGAGG00000017535	XRN1	89	71.637	Gopherus_agassizii
ENSXMAG00000018320	xrn1	98	71.964	ENSGGOG00000008047	XRN1	92	71.964	Gorilla_gorilla
ENSXMAG00000018320	xrn1	98	84.275	ENSHBUG00000005908	xrn1	95	83.106	Haplochromis_burtoni
ENSXMAG00000018320	xrn1	98	72.453	ENSHGLG00000014476	XRN1	99	76.948	Heterocephalus_glaber_female
ENSXMAG00000018320	xrn1	98	72.453	ENSHGLG00100015130	XRN1	99	76.948	Heterocephalus_glaber_male
ENSXMAG00000018320	xrn1	100	73.350	ENSHCOG00000014062	xrn1	99	73.165	Hippocampus_comes
ENSXMAG00000018320	xrn1	99	76.954	ENSIPUG00000015229	xrn1	93	77.357	Ictalurus_punctatus
ENSXMAG00000018320	xrn1	98	72.186	ENSSTOG00000013552	XRN1	99	76.948	Ictidomys_tridecemlineatus
ENSXMAG00000018320	xrn1	98	68.065	ENSJJAG00000010863	Xrn1	99	75.622	Jaculus_jaculus
ENSXMAG00000018320	xrn1	99	84.660	ENSKMAG00000021356	xrn1	95	85.806	Kryptolebias_marmoratus
ENSXMAG00000018320	xrn1	98	86.153	ENSLBEG00000018656	xrn1	97	99.029	Labrus_bergylta
ENSXMAG00000018320	xrn1	100	72.055	ENSLACG00000009020	XRN1	94	71.812	Latimeria_chalumnae
ENSXMAG00000018320	xrn1	98	75.856	ENSLOCG00000007944	xrn1	96	72.538	Lepisosteus_oculatus
ENSXMAG00000018320	xrn1	66	72.753	ENSLAFG00000015426	XRN1	100	72.710	Loxodonta_africana
ENSXMAG00000018320	xrn1	98	71.964	ENSMFAG00000032599	XRN1	92	71.883	Macaca_fascicularis
ENSXMAG00000018320	xrn1	98	71.964	ENSMMUG00000014038	XRN1	92	71.883	Macaca_mulatta
ENSXMAG00000018320	xrn1	98	71.883	ENSMNEG00000034217	XRN1	92	71.801	Macaca_nemestrina
ENSXMAG00000018320	xrn1	99	84.443	ENSMAMG00000013219	xrn1	96	84.282	Mastacembelus_armatus
ENSXMAG00000018320	xrn1	98	86.230	ENSMZEG00005015099	xrn1	91	86.148	Maylandia_zebra
ENSXMAG00000018320	xrn1	97	70.758	ENSMGAG00000006333	XRN1	90	70.346	Meleagris_gallopavo
ENSXMAG00000018320	xrn1	93	72.290	ENSMICG00000048948	XRN1	96	95.146	Microcebus_murinus
ENSXMAG00000018320	xrn1	60	77.266	ENSMOCG00000008665	Xrn1	99	76.630	Microtus_ochrogaster
ENSXMAG00000018320	xrn1	96	73.183	ENSMODG00000021236	XRN1	91	72.108	Monodelphis_domestica
ENSXMAG00000018320	xrn1	98	86.062	ENSMALG00000004098	xrn1	92	85.894	Monopterus_albus
ENSXMAG00000018320	xrn1	95	77.476	MGP_CAROLIEiJ_G0032535	Xrn1	100	90.000	Mus_caroli
ENSXMAG00000018320	xrn1	100	68.569	ENSMUSG00000032410	Xrn1	100	90.000	Mus_musculus
ENSXMAG00000018320	xrn1	98	71.394	MGP_PahariEiJ_G0015404	Xrn1	100	90.000	Mus_pahari
ENSXMAG00000018320	xrn1	98	71.895	MGP_SPRETEiJ_G0033678	Xrn1	100	90.000	Mus_spretus
ENSXMAG00000018320	xrn1	92	72.920	ENSMPUG00000012040	XRN1	92	72.349	Mustela_putorius_furo
ENSXMAG00000018320	xrn1	98	71.964	ENSMLUG00000016885	XRN1	90	71.801	Myotis_lucifugus
ENSXMAG00000018320	xrn1	60	73.408	ENSNGAG00000023964	Xrn1	99	73.089	Nannospalax_galili
ENSXMAG00000018320	xrn1	92	71.801	ENSNLEG00000004726	XRN1	92	71.720	Nomascus_leucogenys
ENSXMAG00000018320	xrn1	70	95.876	ENSMEUG00000014473	-	64	96.117	Notamacropus_eugenii
ENSXMAG00000018320	xrn1	69	70.073	ENSOPRG00000007337	-	64	70.073	Ochotona_princeps
ENSXMAG00000018320	xrn1	98	86.639	ENSONIG00000016673	xrn1	92	86.557	Oreochromis_niloticus
ENSXMAG00000018320	xrn1	89	69.708	ENSOANG00000006735	XRN1	96	65.649	Ornithorhynchus_anatinus
ENSXMAG00000018320	xrn1	98	72.490	ENSOCUG00000001861	XRN1	90	72.490	Oryctolagus_cuniculus
ENSXMAG00000018320	xrn1	98	85.632	ENSORLG00000013005	xrn1	94	84.413	Oryzias_latipes
ENSXMAG00000018320	xrn1	98	86.281	ENSORLG00020005559	xrn1	92	85.304	Oryzias_latipes_hni
ENSXMAG00000018320	xrn1	98	85.550	ENSORLG00015022523	xrn1	100	77.763	Oryzias_latipes_hsok
ENSXMAG00000018320	xrn1	98	86.678	ENSOMEG00000015397	xrn1	100	79.748	Oryzias_melastigma
ENSXMAG00000018320	xrn1	98	69.927	ENSOGAG00000000170	XRN1	92	69.927	Otolemur_garnettii
ENSXMAG00000018320	xrn1	98	72.127	ENSOARG00000006343	XRN1	92	71.964	Ovis_aries
ENSXMAG00000018320	xrn1	98	71.964	ENSPPAG00000010180	XRN1	92	71.964	Pan_paniscus
ENSXMAG00000018320	xrn1	95	72.394	ENSPPRG00000007125	XRN1	92	72.231	Panthera_pardus
ENSXMAG00000018320	xrn1	94	72.394	ENSPTIG00000021081	XRN1	92	72.231	Panthera_tigris_altaica
ENSXMAG00000018320	xrn1	98	71.964	ENSPTRG00000015482	XRN1	92	71.964	Pan_troglodytes
ENSXMAG00000018320	xrn1	98	71.964	ENSPANG00000010638	XRN1	92	71.883	Papio_anubis
ENSXMAG00000018320	xrn1	98	71.729	ENSPSIG00000018050	XRN1	90	71.486	Pelodiscus_sinensis
ENSXMAG00000018320	xrn1	60	85.048	ENSPMGG00000002648	xrn1	99	86.656	Periophthalmus_magnuspinnatus
ENSXMAG00000018320	xrn1	60	77.107	ENSPEMG00000020610	Xrn1	99	76.471	Peromyscus_maniculatus_bairdii
ENSXMAG00000018320	xrn1	68	76.724	ENSPMAG00000002975	xrn1	90	76.724	Petromyzon_marinus
ENSXMAG00000018320	xrn1	97	73.339	ENSPCIG00000028735	XRN1	99	76.911	Phascolarctos_cinereus
ENSXMAG00000018320	xrn1	87	95.184	ENSPFOG00000013932	xrn1	91	95.184	Poecilia_formosa
ENSXMAG00000018320	xrn1	87	94.910	ENSPLAG00000021653	xrn1	90	95.156	Poecilia_latipinna
ENSXMAG00000018320	xrn1	84	95.004	ENSPMEG00000003076	xrn1	86	95.250	Poecilia_mexicana
ENSXMAG00000018320	xrn1	99	94.031	ENSPREG00000021147	xrn1	93	93.622	Poecilia_reticulata
ENSXMAG00000018320	xrn1	98	72.127	ENSPPYG00000014172	XRN1	92	72.046	Pongo_abelii
ENSXMAG00000018320	xrn1	83	67.475	ENSPCAG00000005638	XRN1	87	67.224	Procavia_capensis
ENSXMAG00000018320	xrn1	98	71.720	ENSPCOG00000013089	XRN1	99	76.471	Propithecus_coquereli
ENSXMAG00000018320	xrn1	86	69.862	ENSPVAG00000016265	XRN1	80	85.549	Pteropus_vampyrus
ENSXMAG00000018320	xrn1	99	84.844	ENSPNYG00000010570	xrn1	95	84.683	Pundamilia_nyererei
ENSXMAG00000018320	xrn1	98	75.205	ENSPNAG00000023531	xrn1	92	74.877	Pygocentrus_nattereri
ENSXMAG00000018320	xrn1	98	71.556	ENSRNOG00000042951	Xrn1	91	71.232	Rattus_norvegicus
ENSXMAG00000018320	xrn1	92	71.883	ENSRBIG00000041227	XRN1	92	71.801	Rhinopithecus_bieti
ENSXMAG00000018320	xrn1	74	52.717	YGL173C	XRN1	73	52.717	Saccharomyces_cerevisiae
ENSXMAG00000018320	xrn1	98	72.290	ENSSBOG00000029561	XRN1	92	72.209	Saimiri_boliviensis_boliviensis
ENSXMAG00000018320	xrn1	96	71.917	ENSSHAG00000016207	XRN1	92	71.500	Sarcophilus_harrisii
ENSXMAG00000018320	xrn1	98	78.336	ENSSFOG00015024211	xrn1	93	78.171	Scleropages_formosus
ENSXMAG00000018320	xrn1	98	84.930	ENSSMAG00000016534	xrn1	100	76.618	Scophthalmus_maximus
ENSXMAG00000018320	xrn1	100	77.047	ENSSDUG00000010306	xrn1	100	76.861	Seriola_dumerili
ENSXMAG00000018320	xrn1	100	84.105	ENSSLDG00000021543	xrn1	100	80.607	Seriola_lalandi_dorsalis
ENSXMAG00000018320	xrn1	64	66.942	ENSSARG00000007741	-	75	66.736	Sorex_araneus
ENSXMAG00000018320	xrn1	98	72.913	ENSTGUG00000008498	XRN1	92	71.916	Taeniopygia_guttata
ENSXMAG00000018320	xrn1	94	84.224	ENSTRUG00000004895	xrn1	97	85.931	Takifugu_rubripes
ENSXMAG00000018320	xrn1	98	80.870	ENSTNIG00000017615	xrn1	93	80.788	Tetraodon_nigroviridis
ENSXMAG00000018320	xrn1	79	85.215	ENSTBEG00000003256	XRN1	81	84.881	Tupaia_belangeri
ENSXMAG00000018320	xrn1	98	69.519	ENSTTRG00000012914	XRN1	93	69.519	Tursiops_truncatus
ENSXMAG00000018320	xrn1	92	70.334	ENSUAMG00000001608	XRN1	99	73.450	Ursus_americanus
ENSXMAG00000018320	xrn1	92	72.127	ENSUMAG00000013625	XRN1	92	72.046	Ursus_maritimus
ENSXMAG00000018320	xrn1	98	69.086	ENSVPAG00000004690	XRN1	93	69.005	Vicugna_pacos
ENSXMAG00000018320	xrn1	92	72.453	ENSVVUG00000024461	XRN1	99	77.266	Vulpes_vulpes
ENSXMAG00000018320	xrn1	98	71.990	ENSXETG00000000619	xrn1	98	85.638	Xenopus_tropicalis
ENSXMAG00000018320	xrn1	100	97.269	ENSXCOG00000007917	xrn1	99	97.269	Xiphophorus_couchianus