EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018375 (Gene tree)
Gene ID: -
Gene Symbol: r3hcc1
Alias: si:dkey-191l12.1
Full Name: R3H domain and coiled-coil containing 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 9604 bases
Position: chr20:24991691-25001294
Accession: ZDB-GENE-091204-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000018409	R3H	PF01424.22	1.7e-10	1	1
ENSXMAP00000023920	R3H	PF01424.22	2.1e-09	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018436	-	4398	-	ENSXMAP00000018409	450 (aa)	-	M4AVB4
ENSXMAT00000039191	-	5165	-	ENSXMAP00000023920	406 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000018375's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018375's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018375	r3hcc1	91	33.842	ENSG00000104679	R3HCC1	100	41.860	Homo_sapiens
ENSXMAG00000018375	r3hcc1	93	59.686	ENSAPOG00000003616	r3hcc1	93	57.767	Acanthochromis_polyacanthus
ENSXMAG00000018375	r3hcc1	91	35.468	ENSAMEG00000002963	R3HCC1	89	35.308	Ailuropoda_melanoleuca
ENSXMAG00000018375	r3hcc1	92	54.889	ENSACIG00000017144	r3hcc1	98	59.627	Amphilophus_citrinellus
ENSXMAG00000018375	r3hcc1	93	60.209	ENSAOCG00000003945	r3hcc1	100	58.780	Amphiprion_ocellaris
ENSXMAG00000018375	r3hcc1	93	60.677	ENSAPEG00000003613	r3hcc1	100	59.024	Amphiprion_percula
ENSXMAG00000018375	r3hcc1	90	60.212	ENSATEG00000023860	r3hcc1	98	60.401	Anabas_testudineus
ENSXMAG00000018375	r3hcc1	93	36.010	ENSACAG00000016627	R3HCC1	59	47.143	Anolis_carolinensis
ENSXMAG00000018375	r3hcc1	92	33.509	ENSANAG00000036169	R3HCC1	92	34.389	Aotus_nancymaae
ENSXMAG00000018375	r3hcc1	91	35.309	ENSBTAG00000025830	R3HCC1	93	34.537	Bos_taurus
ENSXMAG00000018375	r3hcc1	91	35.294	ENSCJAG00000020118	R3HCC1	96	34.793	Callithrix_jacchus
ENSXMAG00000018375	r3hcc1	77	32.361	ENSCAFG00020012870	R3HCC1	54	45.238	Canis_lupus_dingo
ENSXMAG00000018375	r3hcc1	91	34.761	ENSCHIG00000009107	R3HCC1	97	35.147	Capra_hircus
ENSXMAG00000018375	r3hcc1	91	35.250	ENSTSYG00000000511	R3HCC1	75	35.388	Carlito_syrichta
ENSXMAG00000018375	r3hcc1	60	40.000	ENSCAPG00000015813	R3HCC1	56	40.000	Cavia_aperea
ENSXMAG00000018375	r3hcc1	63	45.775	ENSCPOG00000009696	R3HCC1	61	45.775	Cavia_porcellus
ENSXMAG00000018375	r3hcc1	91	34.225	ENSCCAG00000037811	R3HCC1	96	33.820	Cebus_capucinus
ENSXMAG00000018375	r3hcc1	91	34.417	ENSCATG00000032971	R3HCC1	85	34.483	Cercocebus_atys
ENSXMAG00000018375	r3hcc1	92	35.859	ENSCLAG00000015556	R3HCC1	82	34.633	Chinchilla_lanigera
ENSXMAG00000018375	r3hcc1	91	33.750	ENSCSAG00000016250	R3HCC1	89	34.633	Chlorocebus_sabaeus
ENSXMAG00000018375	r3hcc1	91	34.400	ENSCANG00000029441	R3HCC1	89	34.174	Colobus_angolensis_palliatus
ENSXMAG00000018375	r3hcc1	66	44.586	ENSCGRG00001014977	R3hcc1	60	45.455	Cricetulus_griseus_chok1gshd
ENSXMAG00000018375	r3hcc1	66	44.586	ENSCGRG00000004454	R3hcc1	60	45.455	Cricetulus_griseus_crigri
ENSXMAG00000018375	r3hcc1	93	57.436	ENSCSEG00000005748	r3hcc1	99	56.595	Cynoglossus_semilaevis
ENSXMAG00000018375	r3hcc1	77	66.102	ENSCVAG00000002640	r3hcc1	96	65.537	Cyprinodon_variegatus
ENSXMAG00000018375	r3hcc1	92	42.268	ENSDARG00000099593	r3hcc1	99	41.981	Danio_rerio
ENSXMAG00000018375	r3hcc1	91	33.251	ENSDNOG00000007168	R3HCC1	61	45.455	Dasypus_novemcinctus
ENSXMAG00000018375	r3hcc1	92	31.081	ENSDORG00000026365	R3hcc1	63	43.226	Dipodomys_ordii
ENSXMAG00000018375	r3hcc1	91	31.746	ENSETEG00000001147	R3HCC1	94	31.136	Echinops_telfairi
ENSXMAG00000018375	r3hcc1	92	36.098	ENSEASG00005018782	R3HCC1	79	35.281	Equus_asinus_asinus
ENSXMAG00000018375	r3hcc1	92	36.207	ENSECAG00000025013	R3HCC1	95	35.586	Equus_caballus
ENSXMAG00000018375	r3hcc1	91	33.500	ENSEEUG00000011918	R3HCC1	93	34.483	Erinaceus_europaeus
ENSXMAG00000018375	r3hcc1	91	47.089	ENSELUG00000023650	r3hcc1	98	43.560	Esox_lucius
ENSXMAG00000018375	r3hcc1	91	35.427	ENSFCAG00000012395	R3HCC1	93	35.797	Felis_catus
ENSXMAG00000018375	r3hcc1	70	39.855	ENSFALG00000001646	R3HCC1	65	35.465	Ficedula_albicollis
ENSXMAG00000018375	r3hcc1	89	37.250	ENSGMOG00000017590	-	98	35.840	Gadus_morhua
ENSXMAG00000018375	r3hcc1	100	94.444	ENSGAFG00000008747	-	100	94.444	Gambusia_affinis
ENSXMAG00000018375	r3hcc1	91	58.245	ENSGACG00000008447	r3hcc1	96	57.554	Gasterosteus_aculeatus
ENSXMAG00000018375	r3hcc1	74	44.970	ENSGAGG00000018009	R3HCC1	52	42.347	Gopherus_agassizii
ENSXMAG00000018375	r3hcc1	91	33.155	ENSGGOG00000013817	R3HCC1	97	33.102	Gorilla_gorilla
ENSXMAG00000018375	r3hcc1	66	89.362	ENSHBUG00000022250	-	88	83.133	Haplochromis_burtoni
ENSXMAG00000018375	r3hcc1	91	34.624	ENSHGLG00000010517	R3HCC1	90	33.634	Heterocephalus_glaber_female
ENSXMAG00000018375	r3hcc1	91	34.624	ENSHGLG00100006388	R3HCC1	90	33.634	Heterocephalus_glaber_male
ENSXMAG00000018375	r3hcc1	92	53.938	ENSHCOG00000011745	r3hcc1	95	54.098	Hippocampus_comes
ENSXMAG00000018375	r3hcc1	92	47.059	ENSIPUG00000024504	r3hcc1	87	46.265	Ictalurus_punctatus
ENSXMAG00000018375	r3hcc1	66	45.098	ENSSTOG00000027130	R3HCC1	66	46.575	Ictidomys_tridecemlineatus
ENSXMAG00000018375	r3hcc1	93	67.442	ENSKMAG00000000286	r3hcc1	100	66.085	Kryptolebias_marmoratus
ENSXMAG00000018375	r3hcc1	92	33.985	ENSLACG00000011894	R3HCC1	68	47.260	Latimeria_chalumnae
ENSXMAG00000018375	r3hcc1	96	43.202	ENSLOCG00000015442	r3hcc1	99	43.596	Lepisosteus_oculatus
ENSXMAG00000018375	r3hcc1	65	45.890	ENSLAFG00000016137	R3HCC1	59	45.890	Loxodonta_africana
ENSXMAG00000018375	r3hcc1	91	34.688	ENSMFAG00000032894	R3HCC1	86	34.713	Macaca_fascicularis
ENSXMAG00000018375	r3hcc1	91	34.225	ENSMMUG00000016655	R3HCC1	88	34.713	Macaca_mulatta
ENSXMAG00000018375	r3hcc1	91	34.933	ENSMNEG00000043283	R3HCC1	81	34.943	Macaca_nemestrina
ENSXMAG00000018375	r3hcc1	91	35.200	ENSMLEG00000030147	R3HCC1	89	34.713	Mandrillus_leucophaeus
ENSXMAG00000018375	r3hcc1	93	59.487	ENSMAMG00000018146	r3hcc1	100	59.158	Mastacembelus_armatus
ENSXMAG00000018375	r3hcc1	93	32.662	ENSMGAG00000001356	R3HCC1	92	32.662	Meleagris_gallopavo
ENSXMAG00000018375	r3hcc1	91	32.794	ENSMAUG00000016096	R3hcc1	97	33.550	Mesocricetus_auratus
ENSXMAG00000018375	r3hcc1	91	36.126	ENSMICG00000011146	R3HCC1	96	35.561	Microcebus_murinus
ENSXMAG00000018375	r3hcc1	64	45.205	ENSMOCG00000018508	R3hcc1	97	33.543	Microtus_ochrogaster
ENSXMAG00000018375	r3hcc1	93	58.040	ENSMALG00000000731	r3hcc1	100	60.000	Monopterus_albus
ENSXMAG00000018375	r3hcc1	64	42.466	MGP_CAROLIEiJ_G0019467	R3hcc1	59	43.357	Mus_caroli
ENSXMAG00000018375	r3hcc1	65	42.282	ENSMUSG00000034194	R3hcc1	59	43.357	Mus_musculus
ENSXMAG00000018375	r3hcc1	67	40.741	MGP_PahariEiJ_G0030484	R3hcc1	61	41.667	Mus_pahari
ENSXMAG00000018375	r3hcc1	65	42.282	MGP_SPRETEiJ_G0020359	R3hcc1	59	43.357	Mus_spretus
ENSXMAG00000018375	r3hcc1	91	34.545	ENSMPUG00000003457	R3HCC1	85	33.941	Mustela_putorius_furo
ENSXMAG00000018375	r3hcc1	91	33.559	ENSMLUG00000000266	R3HCC1	89	34.459	Myotis_lucifugus
ENSXMAG00000018375	r3hcc1	82	85.185	ENSNBRG00000016975	-	82	85.185	Neolamprologus_brichardi
ENSXMAG00000018375	r3hcc1	84	33.007	ENSNLEG00000015944	R3HCC1	85	32.763	Nomascus_leucogenys
ENSXMAG00000018375	r3hcc1	92	34.901	ENSMEUG00000010587	R3HCC1	98	34.921	Notamacropus_eugenii
ENSXMAG00000018375	r3hcc1	91	36.272	ENSOPRG00000013390	R3HCC1	93	35.104	Ochotona_princeps
ENSXMAG00000018375	r3hcc1	92	31.481	ENSODEG00000007529	R3HCC1	62	43.537	Octodon_degus
ENSXMAG00000018375	r3hcc1	91	34.430	ENSOANG00000013877	R3HCC1	94	34.773	Ornithorhynchus_anatinus
ENSXMAG00000018375	r3hcc1	91	35.550	ENSOCUG00000023554	R3HCC1	83	35.349	Oryctolagus_cuniculus
ENSXMAG00000018375	r3hcc1	93	53.543	ENSORLG00000016816	r3hcc1	100	52.405	Oryzias_latipes
ENSXMAG00000018375	r3hcc1	93	52.756	ENSORLG00020012005	r3hcc1	100	51.646	Oryzias_latipes_hni
ENSXMAG00000018375	r3hcc1	93	53.525	ENSORLG00015007018	r3hcc1	100	52.645	Oryzias_latipes_hsok
ENSXMAG00000018375	r3hcc1	93	54.167	ENSOMEG00000000816	r3hcc1	100	52.778	Oryzias_melastigma
ENSXMAG00000018375	r3hcc1	91	34.174	ENSOGAG00000001291	R3HCC1	62	44.755	Otolemur_garnettii
ENSXMAG00000018375	r3hcc1	94	34.649	ENSOARG00000010146	R3HCC1	97	35.307	Ovis_aries
ENSXMAG00000018375	r3hcc1	91	32.741	ENSPPAG00000033165	R3HCC1	97	33.333	Pan_paniscus
ENSXMAG00000018375	r3hcc1	91	34.177	ENSPPRG00000002522	R3HCC1	97	35.321	Panthera_pardus
ENSXMAG00000018375	r3hcc1	93	34.230	ENSPTIG00000011230	R3HCC1	94	35.556	Panthera_tigris_altaica
ENSXMAG00000018375	r3hcc1	91	33.083	ENSPTRG00000020076	R3HCC1	89	33.487	Pan_troglodytes
ENSXMAG00000018375	r3hcc1	91	34.688	ENSPANG00000000453	R3HCC1	96	32.779	Papio_anubis
ENSXMAG00000018375	r3hcc1	94	44.888	ENSPKIG00000020397	-	97	44.140	Paramormyrops_kingsleyae
ENSXMAG00000018375	r3hcc1	91	35.714	ENSPSIG00000017664	R3HCC1	96	35.335	Pelodiscus_sinensis
ENSXMAG00000018375	r3hcc1	64	57.718	ENSPMGG00000007792	r3hcc1	63	57.718	Periophthalmus_magnuspinnatus
ENSXMAG00000018375	r3hcc1	94	33.060	ENSPEMG00000007118	R3hcc1	100	32.787	Peromyscus_maniculatus_bairdii
ENSXMAG00000018375	r3hcc1	93	32.518	ENSPCIG00000022718	-	55	43.624	Phascolarctos_cinereus
ENSXMAG00000018375	r3hcc1	99	92.428	ENSPFOG00000022301	r3hcc1	99	92.428	Poecilia_formosa
ENSXMAG00000018375	r3hcc1	99	92.873	ENSPLAG00000010794	r3hcc1	99	92.873	Poecilia_latipinna
ENSXMAG00000018375	r3hcc1	99	92.428	ENSPMEG00000022515	r3hcc1	99	92.428	Poecilia_mexicana
ENSXMAG00000018375	r3hcc1	99	92.205	ENSPREG00000000713	r3hcc1	99	92.205	Poecilia_reticulata
ENSXMAG00000018375	r3hcc1	91	33.501	ENSPPYG00000018436	R3HCC1	96	34.171	Pongo_abelii
ENSXMAG00000018375	r3hcc1	63	46.154	ENSPCAG00000012229	R3HCC1	68	46.154	Procavia_capensis
ENSXMAG00000018375	r3hcc1	91	34.817	ENSPCOG00000027554	R3HCC1	96	33.652	Propithecus_coquereli
ENSXMAG00000018375	r3hcc1	94	34.286	ENSPVAG00000009829	R3HCC1	95	33.991	Pteropus_vampyrus
ENSXMAG00000018375	r3hcc1	88	46.835	ENSPNAG00000023875	r3hcc1	99	46.835	Pygocentrus_nattereri
ENSXMAG00000018375	r3hcc1	70	42.138	ENSRNOG00000016777	AABR07018321.1	58	40.523	Rattus_norvegicus
ENSXMAG00000018375	r3hcc1	91	34.400	ENSRBIG00000028045	R3HCC1	97	34.253	Rhinopithecus_bieti
ENSXMAG00000018375	r3hcc1	91	34.400	ENSRROG00000031126	R3HCC1	96	33.575	Rhinopithecus_roxellana
ENSXMAG00000018375	r3hcc1	91	34.684	ENSSBOG00000022590	R3HCC1	97	34.028	Saimiri_boliviensis_boliviensis
ENSXMAG00000018375	r3hcc1	61	45.833	ENSSHAG00000016526	-	55	47.000	Sarcophilus_harrisii
ENSXMAG00000018375	r3hcc1	75	65.455	ENSSFOG00015013507	r3hcc1	100	44.192	Scleropages_formosus
ENSXMAG00000018375	r3hcc1	93	62.500	ENSSMAG00000008647	r3hcc1	100	61.728	Scophthalmus_maximus
ENSXMAG00000018375	r3hcc1	92	66.589	ENSSDUG00000022786	r3hcc1	99	66.589	Seriola_dumerili
ENSXMAG00000018375	r3hcc1	92	66.355	ENSSLDG00000019031	r3hcc1	99	66.355	Seriola_lalandi_dorsalis
ENSXMAG00000018375	r3hcc1	93	61.082	ENSSPAG00000013497	r3hcc1	100	58.537	Stegastes_partitus
ENSXMAG00000018375	r3hcc1	91	32.420	ENSSSCG00000037347	-	88	32.420	Sus_scrofa
ENSXMAG00000018375	r3hcc1	91	34.901	ENSSSCG00000039915	-	90	34.763	Sus_scrofa
ENSXMAG00000018375	r3hcc1	93	50.394	ENSTRUG00000015880	r3hcc1	99	49.510	Takifugu_rubripes
ENSXMAG00000018375	r3hcc1	95	32.972	ENSTTRG00000012247	R3HCC1	98	33.333	Tursiops_truncatus
ENSXMAG00000018375	r3hcc1	91	33.416	ENSUAMG00000007344	R3HCC1	96	34.332	Ursus_americanus
ENSXMAG00000018375	r3hcc1	95	34.335	ENSVVUG00000005056	R3HCC1	64	46.154	Vulpes_vulpes
ENSXMAG00000018375	r3hcc1	99	92.327	ENSXCOG00000017626	r3hcc1	91	92.327	Xiphophorus_couchianus