EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018630 (Gene tree)
Gene ID: 102236907
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 4892 bases
Position: chr9:14433544-14438435
Accession: 102236907
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000018666	LSM	PF01423.22	6.4e-21	1	1
ENSXMAP00000020542	LSM	PF01423.22	7.4e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018694	-	1973	XM_005800509	ENSXMAP00000018666	103 (aa)	XP_005800566	M4AW21
ENSXMAT00000038128	-	330	-	ENSXMAP00000020542	109 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000018630's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018630's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018630	lsm7	100	96.117	ENSG00000130332	LSM7	100	96.117	Homo_sapiens
ENSXMAG00000018630	lsm7	91	98.936	ENSAPOG00000015573	lsm7	81	98.936	Acanthochromis_polyacanthus
ENSXMAG00000018630	lsm7	100	93.204	ENSAMEG00000005484	LSM7	100	95.146	Ailuropoda_melanoleuca
ENSXMAG00000018630	lsm7	95	97.959	ENSACIG00000006498	lsm7	78	97.959	Amphilophus_citrinellus
ENSXMAG00000018630	lsm7	99	98.039	ENSAOCG00000001077	lsm7	93	98.039	Amphiprion_ocellaris
ENSXMAG00000018630	lsm7	100	97.087	ENSAPEG00000024447	lsm7	93	98.039	Amphiprion_percula
ENSXMAG00000018630	lsm7	100	99.029	ENSAPEG00000000694	lsm7	100	99.029	Amphiprion_percula
ENSXMAG00000018630	lsm7	100	99.029	ENSATEG00000008557	lsm7	100	99.029	Anabas_testudineus
ENSXMAG00000018630	lsm7	100	96.117	ENSANAG00000037196	-	100	96.117	Aotus_nancymaae
ENSXMAG00000018630	lsm7	100	87.379	ENSANAG00000022222	-	100	87.379	Aotus_nancymaae
ENSXMAG00000018630	lsm7	100	98.058	ENSACLG00000021021	lsm7	100	98.058	Astatotilapia_calliptera
ENSXMAG00000018630	lsm7	100	97.087	ENSAMXG00000037622	lsm7	100	97.087	Astyanax_mexicanus
ENSXMAG00000018630	lsm7	100	96.117	ENSBTAG00000004521	LSM7	100	96.117	Bos_taurus
ENSXMAG00000018630	lsm7	97	58.000	WBGene00003081	lsm-7	97	57.426	Caenorhabditis_elegans
ENSXMAG00000018630	lsm7	69	78.873	ENSCJAG00000039713	-	87	78.873	Callithrix_jacchus
ENSXMAG00000018630	lsm7	98	95.050	ENSCAFG00000019409	LSM7	99	95.098	Canis_familiaris
ENSXMAG00000018630	lsm7	98	95.050	ENSCAFG00020018168	LSM7	74	96.000	Canis_lupus_dingo
ENSXMAG00000018630	lsm7	100	94.175	ENSCHIG00000023663	LSM7	100	96.117	Capra_hircus
ENSXMAG00000018630	lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
ENSXMAG00000018630	lsm7	100	96.117	ENSCPOG00000014025	LSM7	100	96.117	Cavia_porcellus
ENSXMAG00000018630	lsm7	98	96.040	ENSCCAG00000035456	LSM7	99	96.040	Cebus_capucinus
ENSXMAG00000018630	lsm7	100	96.117	ENSCATG00000023543	LSM7	100	96.117	Cercocebus_atys
ENSXMAG00000018630	lsm7	100	96.117	ENSCLAG00000011635	LSM7	100	96.117	Chinchilla_lanigera
ENSXMAG00000018630	lsm7	100	96.117	ENSCSAG00000011599	LSM7	100	96.117	Chlorocebus_sabaeus
ENSXMAG00000018630	lsm7	70	95.833	ENSCPBG00000021317	LSM7	77	95.833	Chrysemys_picta_bellii
ENSXMAG00000018630	lsm7	93	79.167	ENSCING00000022134	-	97	79.167	Ciona_intestinalis
ENSXMAG00000018630	lsm7	100	96.117	ENSCANG00000035525	LSM7	100	96.117	Colobus_angolensis_palliatus
ENSXMAG00000018630	lsm7	100	95.146	ENSCGRG00001000807	-	100	95.146	Cricetulus_griseus_chok1gshd
ENSXMAG00000018630	lsm7	87	85.556	ENSCGRG00001016005	-	92	85.556	Cricetulus_griseus_chok1gshd
ENSXMAG00000018630	lsm7	87	85.556	ENSCGRG00000006821	-	92	85.556	Cricetulus_griseus_crigri
ENSXMAG00000018630	lsm7	98	95.050	ENSCGRG00000014355	-	98	95.098	Cricetulus_griseus_crigri
ENSXMAG00000018630	lsm7	98	99.010	ENSCSEG00000014900	lsm7	86	99.010	Cynoglossus_semilaevis
ENSXMAG00000018630	lsm7	98	100.000	ENSCVAG00000021091	lsm7	94	100.000	Cyprinodon_variegatus
ENSXMAG00000018630	lsm7	100	97.087	ENSDARG00000058328	lsm7	100	97.087	Danio_rerio
ENSXMAG00000018630	lsm7	99	94.118	ENSDORG00000024460	Lsm7	100	94.118	Dipodomys_ordii
ENSXMAG00000018630	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSXMAG00000018630	lsm7	98	93.069	ENSETEG00000012788	LSM7	100	93.137	Echinops_telfairi
ENSXMAG00000018630	lsm7	81	59.036	ENSEBUG00000010470	-	79	59.036	Eptatretus_burgeri
ENSXMAG00000018630	lsm7	100	84.466	ENSEBUG00000016992	lsm7	99	84.466	Eptatretus_burgeri
ENSXMAG00000018630	lsm7	100	92.233	ENSECAG00000001440	LSM7	66	92.233	Equus_caballus
ENSXMAG00000018630	lsm7	100	95.146	ENSFCAG00000003445	LSM7	100	95.146	Felis_catus
ENSXMAG00000018630	lsm7	98	98.020	ENSFALG00000011912	LSM7	100	98.020	Ficedula_albicollis
ENSXMAG00000018630	lsm7	93	95.833	ENSFDAG00000007661	LSM7	100	95.833	Fukomys_damarensis
ENSXMAG00000018630	lsm7	98	100.000	ENSFHEG00000006349	lsm7	90	100.000	Fundulus_heteroclitus
ENSXMAG00000018630	lsm7	100	95.146	ENSGMOG00000013320	lsm7	100	97.087	Gadus_morhua
ENSXMAG00000018630	lsm7	100	100.000	ENSGAFG00000013902	lsm7	100	100.000	Gambusia_affinis
ENSXMAG00000018630	lsm7	100	96.117	ENSGACG00000010390	lsm7	100	97.087	Gasterosteus_aculeatus
ENSXMAG00000018630	lsm7	100	96.117	ENSGGOG00000010172	LSM7	100	96.117	Gorilla_gorilla
ENSXMAG00000018630	lsm7	100	98.058	ENSHBUG00000004616	lsm7	100	98.058	Haplochromis_burtoni
ENSXMAG00000018630	lsm7	100	96.117	ENSHGLG00000010587	LSM7	100	96.117	Heterocephalus_glaber_female
ENSXMAG00000018630	lsm7	100	96.117	ENSHGLG00100000852	LSM7	100	96.117	Heterocephalus_glaber_male
ENSXMAG00000018630	lsm7	98	98.020	ENSHCOG00000020252	lsm7	100	98.020	Hippocampus_comes
ENSXMAG00000018630	lsm7	100	97.087	ENSIPUG00000024724	lsm7	100	97.087	Ictalurus_punctatus
ENSXMAG00000018630	lsm7	98	96.040	ENSSTOG00000028372	LSM7	99	96.040	Ictidomys_tridecemlineatus
ENSXMAG00000018630	lsm7	97	96.000	ENSJJAG00000001936	Lsm7	97	96.000	Jaculus_jaculus
ENSXMAG00000018630	lsm7	100	100.000	ENSKMAG00000022151	lsm7	100	100.000	Kryptolebias_marmoratus
ENSXMAG00000018630	lsm7	100	98.058	ENSLBEG00000005203	lsm7	100	98.058	Labrus_bergylta
ENSXMAG00000018630	lsm7	94	96.117	ENSLACG00000015700	LSM7	100	96.117	Latimeria_chalumnae
ENSXMAG00000018630	lsm7	98	98.020	ENSLOCG00000004356	lsm7	100	97.087	Lepisosteus_oculatus
ENSXMAG00000018630	lsm7	98	96.040	ENSLAFG00000029302	LSM7	99	96.078	Loxodonta_africana
ENSXMAG00000018630	lsm7	100	96.117	ENSMFAG00000044572	LSM7	100	96.117	Macaca_fascicularis
ENSXMAG00000018630	lsm7	100	96.117	ENSMMUG00000000452	LSM7	100	96.117	Macaca_mulatta
ENSXMAG00000018630	lsm7	100	96.117	ENSMNEG00000004393	LSM7	100	96.117	Macaca_nemestrina
ENSXMAG00000018630	lsm7	100	96.117	ENSMLEG00000030852	LSM7	100	96.117	Mandrillus_leucophaeus
ENSXMAG00000018630	lsm7	100	98.058	ENSMAMG00000005410	lsm7	100	98.058	Mastacembelus_armatus
ENSXMAG00000018630	lsm7	100	98.058	ENSMZEG00005028055	lsm7	100	98.058	Maylandia_zebra
ENSXMAG00000018630	lsm7	100	98.058	ENSMGAG00000000750	LSM7	89	98.058	Meleagris_gallopavo
ENSXMAG00000018630	lsm7	100	95.146	ENSMAUG00000009276	Lsm7	100	95.146	Mesocricetus_auratus
ENSXMAG00000018630	lsm7	100	96.117	ENSMICG00000028619	-	100	96.117	Microcebus_murinus
ENSXMAG00000018630	lsm7	100	95.146	ENSMICG00000009988	-	100	95.146	Microcebus_murinus
ENSXMAG00000018630	lsm7	100	95.146	ENSMOCG00000016925	Lsm7	100	95.146	Microtus_ochrogaster
ENSXMAG00000018630	lsm7	100	99.029	ENSMMOG00000019645	lsm7	98	99.029	Mola_mola
ENSXMAG00000018630	lsm7	100	97.087	ENSMODG00000004722	LSM7	100	97.087	Monodelphis_domestica
ENSXMAG00000018630	lsm7	100	98.058	ENSMALG00000014511	lsm7	79	98.058	Monopterus_albus
ENSXMAG00000018630	lsm7	99	95.098	MGP_CAROLIEiJ_G0015607	Lsm7	99	95.098	Mus_caroli
ENSXMAG00000018630	lsm7	99	95.098	ENSMUSG00000035215	Lsm7	99	95.098	Mus_musculus
ENSXMAG00000018630	lsm7	99	95.098	MGP_PahariEiJ_G0031020	Lsm7	99	95.098	Mus_pahari
ENSXMAG00000018630	lsm7	99	95.098	MGP_SPRETEiJ_G0016425	Lsm7	99	95.098	Mus_spretus
ENSXMAG00000018630	lsm7	100	93.204	ENSMLUG00000013097	-	100	95.146	Myotis_lucifugus
ENSXMAG00000018630	lsm7	99	90.196	ENSMLUG00000024002	-	94	90.196	Myotis_lucifugus
ENSXMAG00000018630	lsm7	100	94.175	ENSNGAG00000021637	Lsm7	100	94.175	Nannospalax_galili
ENSXMAG00000018630	lsm7	100	96.117	ENSNBRG00000001237	-	82	97.087	Neolamprologus_brichardi
ENSXMAG00000018630	lsm7	98	98.020	ENSNBRG00000015770	lsm7	91	94.340	Neolamprologus_brichardi
ENSXMAG00000018630	lsm7	100	96.117	ENSNLEG00000002265	LSM7	100	96.117	Nomascus_leucogenys
ENSXMAG00000018630	lsm7	100	89.320	ENSODEG00000018769	-	100	89.320	Octodon_degus
ENSXMAG00000018630	lsm7	100	75.728	ENSODEG00000008190	-	100	75.728	Octodon_degus
ENSXMAG00000018630	lsm7	100	96.117	ENSODEG00000013590	-	100	96.117	Octodon_degus
ENSXMAG00000018630	lsm7	100	98.058	ENSONIG00000001801	lsm7	89	98.058	Oreochromis_niloticus
ENSXMAG00000018630	lsm7	100	99.029	ENSORLG00000023951	lsm7	100	99.029	Oryzias_latipes
ENSXMAG00000018630	lsm7	100	99.029	ENSORLG00020022226	lsm7	100	99.029	Oryzias_latipes_hni
ENSXMAG00000018630	lsm7	100	97.087	ENSORLG00015020044	lsm7	94	99.010	Oryzias_latipes_hsok
ENSXMAG00000018630	lsm7	100	99.029	ENSOMEG00000012806	lsm7	100	99.029	Oryzias_melastigma
ENSXMAG00000018630	lsm7	100	84.466	ENSOGAG00000024373	-	100	84.466	Otolemur_garnettii
ENSXMAG00000018630	lsm7	98	94.059	ENSOGAG00000000144	-	100	94.118	Otolemur_garnettii
ENSXMAG00000018630	lsm7	100	94.175	ENSOARG00000014013	LSM7	100	96.117	Ovis_aries
ENSXMAG00000018630	lsm7	100	96.117	ENSPPAG00000026500	LSM7	100	96.117	Pan_paniscus
ENSXMAG00000018630	lsm7	100	95.146	ENSPPRG00000008624	LSM7	100	95.146	Panthera_pardus
ENSXMAG00000018630	lsm7	98	95.050	ENSPTIG00000016252	LSM7	98	95.050	Panthera_tigris_altaica
ENSXMAG00000018630	lsm7	100	96.117	ENSPTRG00000010233	LSM7	100	96.117	Pan_troglodytes
ENSXMAG00000018630	lsm7	100	96.117	ENSPANG00000020668	LSM7	100	96.117	Papio_anubis
ENSXMAG00000018630	lsm7	100	99.029	ENSPKIG00000011325	lsm7	100	99.029	Paramormyrops_kingsleyae
ENSXMAG00000018630	lsm7	98	98.020	ENSPSIG00000017149	LSM7	89	98.020	Pelodiscus_sinensis
ENSXMAG00000018630	lsm7	100	99.029	ENSPMGG00000006498	lsm7	100	99.029	Periophthalmus_magnuspinnatus
ENSXMAG00000018630	lsm7	100	97.087	ENSPCIG00000030454	LSM7	100	97.087	Phascolarctos_cinereus
ENSXMAG00000018630	lsm7	100	97.087	ENSPFOG00000012467	lsm7	96	97.222	Poecilia_formosa
ENSXMAG00000018630	lsm7	100	97.087	ENSPLAG00000000252	lsm7	94	99.010	Poecilia_latipinna
ENSXMAG00000018630	lsm7	100	97.087	ENSPMEG00000000587	lsm7	96	97.222	Poecilia_mexicana
ENSXMAG00000018630	lsm7	78	79.012	ENSPREG00000016718	lsm7	65	79.012	Poecilia_reticulata
ENSXMAG00000018630	lsm7	71	94.521	ENSPPYG00000009348	-	50	94.521	Pongo_abelii
ENSXMAG00000018630	lsm7	100	96.117	ENSPCOG00000017177	LSM7	100	96.117	Propithecus_coquereli
ENSXMAG00000018630	lsm7	100	98.058	ENSPNYG00000006938	lsm7	100	98.058	Pundamilia_nyererei
ENSXMAG00000018630	lsm7	100	97.087	ENSPNAG00000010141	lsm7	100	97.087	Pygocentrus_nattereri
ENSXMAG00000018630	lsm7	99	96.078	ENSRNOG00000019552	Lsm7	99	96.078	Rattus_norvegicus
ENSXMAG00000018630	lsm7	100	96.117	ENSRBIG00000035978	LSM7	100	96.117	Rhinopithecus_bieti
ENSXMAG00000018630	lsm7	100	96.117	ENSRROG00000034044	LSM7	100	96.117	Rhinopithecus_roxellana
ENSXMAG00000018630	lsm7	83	48.315	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
ENSXMAG00000018630	lsm7	100	96.117	ENSSBOG00000034899	LSM7	100	96.117	Saimiri_boliviensis_boliviensis
ENSXMAG00000018630	lsm7	100	97.087	ENSSFOG00015006728	lsm7	100	97.087	Scleropages_formosus
ENSXMAG00000018630	lsm7	100	97.087	ENSSMAG00000004195	lsm7	94	98.058	Scophthalmus_maximus
ENSXMAG00000018630	lsm7	100	99.029	ENSSDUG00000001863	lsm7	100	99.029	Seriola_dumerili
ENSXMAG00000018630	lsm7	100	99.029	ENSSLDG00000016339	lsm7	100	99.029	Seriola_lalandi_dorsalis
ENSXMAG00000018630	lsm7	100	99.029	ENSSPAG00000015221	lsm7	100	99.029	Stegastes_partitus
ENSXMAG00000018630	lsm7	98	96.040	ENSSSCG00000013463	LSM7	99	96.040	Sus_scrofa
ENSXMAG00000018630	lsm7	98	98.020	ENSTGUG00000000067	LSM7	100	98.020	Taeniopygia_guttata
ENSXMAG00000018630	lsm7	100	98.058	ENSTRUG00000022913	lsm7	100	98.058	Takifugu_rubripes
ENSXMAG00000018630	lsm7	100	98.058	ENSTNIG00000015525	lsm7	100	98.058	Tetraodon_nigroviridis
ENSXMAG00000018630	lsm7	68	82.857	ENSTBEG00000016602	LSM7	100	82.857	Tupaia_belangeri
ENSXMAG00000018630	lsm7	100	93.204	ENSUAMG00000000912	LSM7	88	93.396	Ursus_americanus
ENSXMAG00000018630	lsm7	98	95.050	ENSUMAG00000006556	LSM7	79	95.050	Ursus_maritimus
ENSXMAG00000018630	lsm7	69	94.366	ENSVVUG00000002640	LSM7	65	94.366	Vulpes_vulpes
ENSXMAG00000018630	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSXMAG00000018630	lsm7	99	99.020	ENSXCOG00000002572	lsm7	100	99.020	Xiphophorus_couchianus