EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000018863 (Gene tree)
Gene ID: 102224403
Gene Symbol: srrm1
Alias: wu:fb34f04|wu:fb38b06|zgc:63802
Full Name: serine and arginine repetitive matrix 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 11828 bases
Position: chr19:12623200-12635027
Accession: 102224403
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000034250	PWI	PF01480.17	1.6e-30	1	1
ENSXMAP00000018921	PWI	PF01480.17	1.8e-30	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000018950	-	2855	XM_005799135	ENSXMAP00000018921	859 (aa)	XP_005799192	M4AWS6
ENSXMAT00000042635	-	2864	XM_023353041	ENSXMAP00000034250	862 (aa)	XP_023208809	-

Gene Model

Click here to download ENSXMAG00000018863's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03013	RNA transport	KEGG
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000018863's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000018863	srrm1	59	83.752	ENSAPOG00000001170	srrm1	99	100.000	Acanthochromis_polyacanthus
ENSXMAG00000018863	srrm1	100	78.555	ENSATEG00000007659	srrm1	58	75.149	Anabas_testudineus
ENSXMAG00000018863	srrm1	58	70.077	ENSCSEG00000000122	srrm1	59	69.498	Cynoglossus_semilaevis
ENSXMAG00000018863	srrm1	58	47.712	ENSDARG00000001244	srrm1	99	96.154	Danio_rerio
ENSXMAG00000018863	srrm1	89	70.213	ENSELUG00000003385	srrm1	99	97.436	Esox_lucius
ENSXMAG00000018863	srrm1	99	63.180	ENSGACG00000007266	srrm1	69	86.979	Gasterosteus_aculeatus
ENSXMAG00000018863	srrm1	100	77.523	ENSMAMG00000010305	srrm1	58	73.360	Mastacembelus_armatus
ENSXMAG00000018863	srrm1	58	91.935	ENSPLAG00000006807	srrm1	99	100.000	Poecilia_latipinna
ENSXMAG00000018863	srrm1	58	91.935	ENSPLAG00000002058	srrm1	77	100.000	Poecilia_latipinna
ENSXMAG00000018863	srrm1	90	94.330	ENSPMEG00000002603	srrm1	97	94.330	Poecilia_mexicana
ENSXMAG00000018863	srrm1	94	92.141	ENSPREG00000002652	srrm1	94	91.476	Poecilia_reticulata