EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000019007 (Gene tree)
Gene ID
102225611
Gene Symbol
pabpc4
Alias
cb12|sb:cb12
Full Name
poly(A) binding protein cytoplasmic 4
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
11573 bases
Position
chr19:12557755-12569327
Accession
102225611
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000031467PABPPF00658.185.5e-3111
ENSXMAP00000019062PABPPF00658.186.4e-3111
ENSXMAP00000019062RRM_5PF13893.62.7e-0911
ENSXMAP00000031467RRM_5PF13893.63.4e-0911
ENSXMAP00000019062RRM_1PF00076.222.7e-9014
ENSXMAP00000019062RRM_1PF00076.222.7e-9024
ENSXMAP00000019062RRM_1PF00076.222.7e-9034
ENSXMAP00000019062RRM_1PF00076.222.7e-9044
ENSXMAP00000031467RRM_1PF00076.228e-6913
ENSXMAP00000031467RRM_1PF00076.228e-6923
ENSXMAP00000031467RRM_1PF00076.228e-6933
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000019090-2428XM_023352123ENSXMAP00000019062626 (aa)XP_023207891M4AX67
ENSXMAT00000041147-2614-ENSXMAP00000031467590 (aa)--
Gene Model
Click here to download ENSXMAG00000019007's gene model file
Pathways
Pathway IDPathway NameSource
xma03013RNA transportKEGG
xma03015mRNA surveillance pathwayKEGG
xma03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000019007's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000019007pabpc410084.689ENSG00000090621PABPC410094.574Homo_sapiens
ENSXMAG00000019007pabpc49996.278ENSAPOG00000001161pabpc49995.847Acanthochromis_polyacanthus
ENSXMAG00000019007pabpc410080.090ENSAMEG00000011535-10079.341Ailuropoda_melanoleuca
ENSXMAG00000019007pabpc49849.518ENSAMEG00000015083-9948.237Ailuropoda_melanoleuca
ENSXMAG00000019007pabpc410095.563ENSACIG00000023343pabpc49995.563Amphilophus_citrinellus
ENSXMAG00000019007pabpc49996.117ENSAOCG00000021529pabpc49995.687Amphiprion_ocellaris
ENSXMAG00000019007pabpc49996.117ENSAPEG00000019196pabpc49995.687Amphiprion_percula
ENSXMAG00000019007pabpc49995.315ENSATEG00000007402pabpc49995.056Anabas_testudineus
ENSXMAG00000019007pabpc49985.669ENSAPLG00000009729-10085.039Anas_platyrhynchos
ENSXMAG00000019007pabpc49885.106ENSACAG00000002544PABPC410084.397Anolis_carolinensis
ENSXMAG00000019007pabpc410083.022ENSANAG00000025079PABPC410082.786Aotus_nancymaae
ENSXMAG00000019007pabpc410096.326ENSACLG00000019558pabpc49996.326Astatotilapia_calliptera
ENSXMAG00000019007pabpc49986.371ENSAMXG00000018779pabpc49986.371Astyanax_mexicanus
ENSXMAG00000019007pabpc410081.804ENSBTAG00000017125PABPC410081.040Bos_taurus
ENSXMAG00000019007pabpc45883.832ENSBTAG00000048536-9383.832Bos_taurus
ENSXMAG00000019007pabpc47480.804ENSCJAG00000045953-8579.018Callithrix_jacchus
ENSXMAG00000019007pabpc410083.022ENSCJAG00000002512-10082.786Callithrix_jacchus
ENSXMAG00000019007pabpc410083.178ENSCAFG00000003081PABPC410083.099Canis_familiaris
ENSXMAG00000019007pabpc410080.240ENSCAFG00020004161PABPC410079.491Canis_lupus_dingo
ENSXMAG00000019007pabpc410065.224ENSCHIG00000023385-10064.760Capra_hircus
ENSXMAG00000019007pabpc410080.090ENSCHIG00000019398-10079.192Capra_hircus
ENSXMAG00000019007pabpc410083.568ENSTSYG00000006532PABPC410082.942Carlito_syrichta
ENSXMAG00000019007pabpc49983.040ENSCAPG00000015984PABPC410082.268Cavia_aperea
ENSXMAG00000019007pabpc410083.075ENSCPOG00000009552PABPC410082.942Cavia_porcellus
ENSXMAG00000019007pabpc410083.022ENSCCAG00000037306PABPC410082.786Cebus_capucinus
ENSXMAG00000019007pabpc410083.178ENSCATG00000042164PABPC410082.942Cercocebus_atys
ENSXMAG00000019007pabpc410082.919ENSCLAG00000011899PABPC410082.942Chinchilla_lanigera
ENSXMAG00000019007pabpc410080.240ENSCSAG00000001135PABPC410079.341Chlorocebus_sabaeus
ENSXMAG00000019007pabpc48788.947ENSCHOG00000005327PABPC47989.488Choloepus_hoffmanni
ENSXMAG00000019007pabpc49986.299ENSCPBG00000001038PABPC410085.669Chrysemys_picta_bellii
ENSXMAG00000019007pabpc49983.412ENSCANG00000034177PABPC410083.175Colobus_angolensis_palliatus
ENSXMAG00000019007pabpc49884.878ENSCGRG00001018166Pabpc410083.758Cricetulus_griseus_chok1gshd
ENSXMAG00000019007pabpc49785.149ENSCGRG00000009777Pabpc410084.006Cricetulus_griseus_crigri
ENSXMAG00000019007pabpc410095.215ENSCSEG00000000130pabpc410095.215Cynoglossus_semilaevis
ENSXMAG00000019007pabpc49998.864ENSCVAG00000019246pabpc410098.864Cyprinodon_variegatus
ENSXMAG00000019007pabpc49892.185ENSDARG00000059259pabpc410091.901Danio_rerio
ENSXMAG00000019007pabpc49982.137ENSDNOG00000018444-10081.866Dasypus_novemcinctus
ENSXMAG00000019007pabpc410081.832ENSDORG00000011581Pabpc410081.164Dipodomys_ordii
ENSXMAG00000019007pabpc49054.562ENSETEG00000009172-9952.813Echinops_telfairi
ENSXMAG00000019007pabpc410090.625ENSETEG00000018453-8490.625Echinops_telfairi
ENSXMAG00000019007pabpc49976.471ENSEBUG00000000992pabpc49976.153Eptatretus_burgeri
ENSXMAG00000019007pabpc49777.561ENSEBUG00000013782pabpc49977.404Eptatretus_burgeri
ENSXMAG00000019007pabpc410080.240ENSEASG00005014119PABPC410079.341Equus_asinus_asinus
ENSXMAG00000019007pabpc410080.240ENSECAG00000009396PABPC410079.341Equus_caballus
ENSXMAG00000019007pabpc49779.141ENSEEUG00000002962PABPC410077.994Erinaceus_europaeus
ENSXMAG00000019007pabpc49892.675ENSELUG00000003195pabpc410092.019Esox_lucius
ENSXMAG00000019007pabpc410083.178ENSFCAG00000015254-10083.099Felis_catus
ENSXMAG00000019007pabpc49985.827ENSFALG00000000543PABPC410085.197Ficedula_albicollis
ENSXMAG00000019007pabpc49452.866ENSFDAG00000010581-9950.947Fukomys_damarensis
ENSXMAG00000019007pabpc410079.940ENSFDAG00000020016-10079.192Fukomys_damarensis
ENSXMAG00000019007pabpc410098.882ENSFHEG00000007548pabpc410098.882Fundulus_heteroclitus
ENSXMAG00000019007pabpc410090.267ENSGMOG00000019025pabpc49990.267Gadus_morhua
ENSXMAG00000019007pabpc49986.457ENSGALG00000003800PABPC410085.827Gallus_gallus
ENSXMAG00000019007pabpc410098.092ENSGAFG00000018195pabpc410099.282Gambusia_affinis
ENSXMAG00000019007pabpc410092.971ENSGACG00000007179pabpc49992.971Gasterosteus_aculeatus
ENSXMAG00000019007pabpc49986.457ENSGAGG00000001888PABPC410085.827Gopherus_agassizii
ENSXMAG00000019007pabpc410083.022ENSGGOG00000004002PABPC410082.786Gorilla_gorilla
ENSXMAG00000019007pabpc410096.166ENSHBUG00000020206pabpc49996.166Haplochromis_burtoni
ENSXMAG00000019007pabpc410082.919ENSHGLG00000011162PABPC410082.786Heterocephalus_glaber_female
ENSXMAG00000019007pabpc410082.919ENSHGLG00100001580PABPC410082.786Heterocephalus_glaber_male
ENSXMAG00000019007pabpc410093.930ENSHCOG00000012694pabpc49994.888Hippocampus_comes
ENSXMAG00000019007pabpc49791.452ENSIPUG00000016620pabpc410090.694Ictalurus_punctatus
ENSXMAG00000019007pabpc410084.689ENSSTOG00000010416PABPC410084.051Ictidomys_tridecemlineatus
ENSXMAG00000019007pabpc410080.828ENSJJAG00000007781Pabpc410079.939Jaculus_jaculus
ENSXMAG00000019007pabpc410095.056ENSKMAG00000013597pabpc410095.056Kryptolebias_marmoratus
ENSXMAG00000019007pabpc410094.603ENSLBEG00000013654pabpc410094.603Labrus_bergylta
ENSXMAG00000019007pabpc49987.107ENSLACG00000011907PABPC410086.635Latimeria_chalumnae
ENSXMAG00000019007pabpc410091.366ENSLOCG00000001877pabpc410091.366Lepisosteus_oculatus
ENSXMAG00000019007pabpc410084.848ENSLAFG00000000151PABPC410084.211Loxodonta_africana
ENSXMAG00000019007pabpc410083.178ENSMFAG00000041481PABPC410082.942Macaca_fascicularis
ENSXMAG00000019007pabpc410080.240ENSMMUG00000007497PABPC410079.341Macaca_mulatta
ENSXMAG00000019007pabpc410083.178ENSMNEG00000043054PABPC410082.942Macaca_nemestrina
ENSXMAG00000019007pabpc410083.178ENSMLEG00000040716PABPC410082.942Mandrillus_leucophaeus
ENSXMAG00000019007pabpc49996.117ENSMAMG00000010025pabpc49995.527Mastacembelus_armatus
ENSXMAG00000019007pabpc410096.166ENSMZEG00005006141pabpc49996.166Maylandia_zebra
ENSXMAG00000019007pabpc49882.939ENSMGAG00000005408PABPC410082.264Meleagris_gallopavo
ENSXMAG00000019007pabpc47279.524ENSMAUG00000001295-9778.571Mesocricetus_auratus
ENSXMAG00000019007pabpc47790.625ENSMAUG00000019763-8487.156Mesocricetus_auratus
ENSXMAG00000019007pabpc45879.532ENSMAUG00000004089-9279.532Mesocricetus_auratus
ENSXMAG00000019007pabpc48884.324ENSMICG00000016633-10083.964Microcebus_murinus
ENSXMAG00000019007pabpc49975.313ENSMICG00000036729-10074.061Microcebus_murinus
ENSXMAG00000019007pabpc49883.845ENSMOCG00000006763Pabpc410082.812Microtus_ochrogaster
ENSXMAG00000019007pabpc410091.693ENSMMOG00000002363pabpc49991.214Mola_mola
ENSXMAG00000019007pabpc46071.200ENSMODG00000018051-9671.200Monodelphis_domestica
ENSXMAG00000019007pabpc49783.513ENSMODG00000017657-10082.300Monodelphis_domestica
ENSXMAG00000019007pabpc410095.382ENSMALG00000011017pabpc49995.382Monopterus_albus
ENSXMAG00000019007pabpc410079.491MGP_CAROLIEiJ_G0026435-10095.745Mus_caroli
ENSXMAG00000019007pabpc49972.727MGP_CAROLIEiJ_G0024864-10073.274Mus_caroli
ENSXMAG00000019007pabpc410084.689ENSMUSG00000011257Pabpc410094.048Mus_musculus
ENSXMAG00000019007pabpc49979.970MGP_PahariEiJ_G0028765Pabpc410096.454Mus_pahari
ENSXMAG00000019007pabpc49970.332MGP_SPRETEiJ_G0027415Pabpc410096.454Mus_spretus
ENSXMAG00000019007pabpc410080.240ENSMPUG00000014414-10079.491Mustela_putorius_furo
ENSXMAG00000019007pabpc49546.293ENSMPUG00000006836-10045.710Mustela_putorius_furo
ENSXMAG00000019007pabpc410084.689ENSMLUG00000012068PABPC410084.051Myotis_lucifugus
ENSXMAG00000019007pabpc410084.848ENSNGAG00000018292Pabpc410084.211Nannospalax_galili
ENSXMAG00000019007pabpc46598.795ENSNBRG00000010047-7298.795Neolamprologus_brichardi
ENSXMAG00000019007pabpc46098.077ENSNBRG00000009708pabpc49898.077Neolamprologus_brichardi
ENSXMAG00000019007pabpc410083.178ENSNLEG00000011928PABPC410082.942Nomascus_leucogenys
ENSXMAG00000019007pabpc48593.651ENSOPRG00000011984PABPC48693.651Ochotona_princeps
ENSXMAG00000019007pabpc49973.859ENSODEG00000017434-10072.822Octodon_degus
ENSXMAG00000019007pabpc410083.022ENSODEG00000006592-10082.473Octodon_degus
ENSXMAG00000019007pabpc45382.143ENSODEG00000013457-10082.143Octodon_degus
ENSXMAG00000019007pabpc410096.166ENSONIG00000008176pabpc49996.166Oreochromis_niloticus
ENSXMAG00000019007pabpc49986.142ENSOANG00000010001PABPC410085.512Ornithorhynchus_anatinus
ENSXMAG00000019007pabpc49580.534ENSOCUG00000000562PABPC48879.592Oryctolagus_cuniculus
ENSXMAG00000019007pabpc49997.222ENSORLG00000017479pabpc49997.222Oryzias_latipes
ENSXMAG00000019007pabpc49997.222ENSORLG00020018644pabpc49997.222Oryzias_latipes_hni
ENSXMAG00000019007pabpc49997.222ENSORLG00015015042pabpc49997.222Oryzias_latipes_hsok
ENSXMAG00000019007pabpc49996.117ENSOMEG00000014410pabpc49995.527Oryzias_melastigma
ENSXMAG00000019007pabpc410081.374ENSOGAG00000004067PABPC410080.945Otolemur_garnettii
ENSXMAG00000019007pabpc410080.090ENSOARG00000020060PABPC410079.192Ovis_aries
ENSXMAG00000019007pabpc410083.022ENSPPAG00000043625PABPC410082.786Pan_paniscus
ENSXMAG00000019007pabpc410083.178ENSPPRG00000024727PABPC410083.099Panthera_pardus
ENSXMAG00000019007pabpc410083.178ENSPTIG00000005829PABPC410083.099Panthera_tigris_altaica
ENSXMAG00000019007pabpc410083.022ENSPTRG00000000573PABPC410082.786Pan_troglodytes
ENSXMAG00000019007pabpc410083.178ENSPANG00000009484PABPC410082.942Papio_anubis
ENSXMAG00000019007pabpc49990.551ENSPKIG00000025356pabpc49990.656Paramormyrops_kingsleyae
ENSXMAG00000019007pabpc49986.772ENSPSIG00000016892PABPC410086.142Pelodiscus_sinensis
ENSXMAG00000019007pabpc410090.575ENSPMGG00000009073pabpc49989.776Periophthalmus_magnuspinnatus
ENSXMAG00000019007pabpc410082.298ENSPEMG00000023569-10082.473Peromyscus_maniculatus_bairdii
ENSXMAG00000019007pabpc410079.784ENSPEMG00000024193-10079.471Peromyscus_maniculatus_bairdii
ENSXMAG00000019007pabpc49674.580ENSPMAG00000007885pabpc410073.320Petromyzon_marinus
ENSXMAG00000019007pabpc48874.913ENSPMAG00000002836pabpc410075.784Petromyzon_marinus
ENSXMAG00000019007pabpc49787.480ENSPCIG00000020674PABPC410094.903Phascolarctos_cinereus
ENSXMAG00000019007pabpc410099.201ENSPFOG00000002682pabpc410099.201Poecilia_formosa
ENSXMAG00000019007pabpc410099.361ENSPLAG00000010112pabpc410099.361Poecilia_latipinna
ENSXMAG00000019007pabpc410099.201ENSPMEG00000019739pabpc410099.201Poecilia_mexicana
ENSXMAG00000019007pabpc410099.521ENSPREG00000001589pabpc410099.521Poecilia_reticulata
ENSXMAG00000019007pabpc410080.090ENSPPYG00000001506PABPC410079.192Pongo_abelii
ENSXMAG00000019007pabpc410075.449ENSPCAG00000003341PABPC410074.551Procavia_capensis
ENSXMAG00000019007pabpc49968.596ENSPCOG00000025882-9969.213Propithecus_coquereli
ENSXMAG00000019007pabpc410083.048ENSPCOG00000023725-10082.812Propithecus_coquereli
ENSXMAG00000019007pabpc49878.773ENSPVAG00000002187PABPC410078.109Pteropus_vampyrus
ENSXMAG00000019007pabpc410096.326ENSPNYG00000006134pabpc49996.326Pundamilia_nyererei
ENSXMAG00000019007pabpc410093.038ENSPNAG00000024355pabpc410093.038Pygocentrus_nattereri
ENSXMAG00000019007pabpc410081.679ENSRNOG00000015642Pabpc410081.011Rattus_norvegicus
ENSXMAG00000019007pabpc410079.695ENSRNOG00000028592AABR07035074.110079.020Rattus_norvegicus
ENSXMAG00000019007pabpc410083.178ENSRBIG00000039761PABPC410082.942Rhinopithecus_bieti
ENSXMAG00000019007pabpc410083.178ENSRROG00000033355PABPC410082.942Rhinopithecus_roxellana
ENSXMAG00000019007pabpc410083.022ENSSBOG00000026193PABPC410082.786Saimiri_boliviensis_boliviensis
ENSXMAG00000019007pabpc49787.319ENSSHAG00000018139PABPC410085.984Sarcophilus_harrisii
ENSXMAG00000019007pabpc49990.523ENSSFOG00015023514pabpc410090.523Scleropages_formosus
ENSXMAG00000019007pabpc410095.056ENSSMAG00000009007pabpc410095.056Scophthalmus_maximus
ENSXMAG00000019007pabpc49996.117ENSSDUG00000012683pabpc49995.687Seriola_dumerili
ENSXMAG00000019007pabpc49996.117ENSSLDG00000013025pabpc49995.687Seriola_lalandi_dorsalis
ENSXMAG00000019007pabpc410073.952ENSSARG00000000310PABPC410073.054Sorex_araneus
ENSXMAG00000019007pabpc49986.963ENSSPUG00000003204PABPC410086.328Sphenodon_punctatus
ENSXMAG00000019007pabpc49996.117ENSSPAG00000009252pabpc49995.527Stegastes_partitus
ENSXMAG00000019007pabpc49444.092ENSSSCG00000036170-9644.092Sus_scrofa
ENSXMAG00000019007pabpc410083.178ENSSSCG00000003660-10082.942Sus_scrofa
ENSXMAG00000019007pabpc49981.532ENSTGUG00000001266PABPC410081.805Taeniopygia_guttata
ENSXMAG00000019007pabpc410093.930ENSTRUG00000005907pabpc49993.930Takifugu_rubripes
ENSXMAG00000019007pabpc410086.901ENSTNIG00000016902pabpc49986.581Tetraodon_nigroviridis
ENSXMAG00000019007pabpc49969.486ENSTBEG00000009035PABPC410068.657Tupaia_belangeri
ENSXMAG00000019007pabpc49960.175ENSTTRG00000014340PABPC410067.662Tursiops_truncatus
ENSXMAG00000019007pabpc410083.178ENSUAMG00000000303PABPC410083.099Ursus_americanus
ENSXMAG00000019007pabpc410087.104ENSUMAG00000019585PABPC410089.885Ursus_maritimus
ENSXMAG00000019007pabpc46682.110ENSVPAG00000010041PABPC47369.912Vicugna_pacos
ENSXMAG00000019007pabpc410083.178ENSVVUG00000005215PABPC410083.099Vulpes_vulpes
ENSXMAG00000019007pabpc49982.362ENSXETG00000010946pabpc410081.732Xenopus_tropicalis
ENSXMAG00000019007pabpc46895.833ENSXETG00000027221-10095.833Xenopus_tropicalis
ENSXMAG00000019007pabpc49996.485ENSXCOG00000013190pabpc49699.057Xiphophorus_couchianus

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