EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000020950 (Gene tree)
Gene ID: 102231217
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 10384 bases
Position: chr10:13935354-13945737
Accession: 102231217
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000032639	AD	PF09793.9	6.4e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000028102	-	1659	XM_005794706	ENSXMAP00000032639	196 (aa)	XP_005794763	UPI0003B73618

Gene Model

Click here to download ENSXMAG00000020950's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000020950's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000020950	lsm12b	100	84.184	ENSG00000161654	LSM12	100	84.184	Homo_sapiens
ENSXMAG00000020950	lsm12b	100	97.959	ENSAPOG00000007907	lsm12b	100	97.959	Acanthochromis_polyacanthus
ENSXMAG00000020950	lsm12b	100	82.412	ENSAMEG00000018321	LSM12	100	82.412	Ailuropoda_melanoleuca
ENSXMAG00000020950	lsm12b	100	95.918	ENSACIG00000008538	lsm12b	100	95.918	Amphilophus_citrinellus
ENSXMAG00000020950	lsm12b	100	97.959	ENSAOCG00000021847	lsm12b	88	97.959	Amphiprion_ocellaris
ENSXMAG00000020950	lsm12b	100	97.959	ENSAPEG00000002252	lsm12b	100	97.959	Amphiprion_percula
ENSXMAG00000020950	lsm12b	100	96.429	ENSATEG00000005705	lsm12b	100	96.429	Anabas_testudineus
ENSXMAG00000020950	lsm12b	100	83.163	ENSACAG00000004618	LSM12	100	83.163	Anolis_carolinensis
ENSXMAG00000020950	lsm12b	100	84.184	ENSANAG00000029011	LSM12	100	85.455	Aotus_nancymaae
ENSXMAG00000020950	lsm12b	100	96.429	ENSACLG00000026332	lsm12b	100	96.429	Astatotilapia_calliptera
ENSXMAG00000020950	lsm12b	100	85.204	ENSAMXG00000036117	lsm12a	91	85.204	Astyanax_mexicanus
ENSXMAG00000020950	lsm12b	100	92.857	ENSAMXG00000032952	lsm12b	100	92.857	Astyanax_mexicanus
ENSXMAG00000020950	lsm12b	100	84.184	ENSBTAG00000016252	LSM12	100	84.184	Bos_taurus
ENSXMAG00000020950	lsm12b	100	84.184	ENSCJAG00000048480	LSM12	100	85.455	Callithrix_jacchus
ENSXMAG00000020950	lsm12b	100	84.184	ENSCAFG00000014379	LSM12	92	84.184	Canis_familiaris
ENSXMAG00000020950	lsm12b	100	84.184	ENSCAFG00020012173	LSM12	100	84.184	Canis_lupus_dingo
ENSXMAG00000020950	lsm12b	100	84.184	ENSCHIG00000018175	LSM12	100	84.184	Capra_hircus
ENSXMAG00000020950	lsm12b	100	84.184	ENSTSYG00000036361	LSM12	100	84.184	Carlito_syrichta
ENSXMAG00000020950	lsm12b	83	80.247	ENSCAPG00000009647	LSM12	89	80.247	Cavia_aperea
ENSXMAG00000020950	lsm12b	100	83.163	ENSCPOG00000012860	LSM12	100	84.545	Cavia_porcellus
ENSXMAG00000020950	lsm12b	100	84.184	ENSCCAG00000032905	LSM12	100	85.455	Cebus_capucinus
ENSXMAG00000020950	lsm12b	100	84.184	ENSCATG00000030577	-	100	85.455	Cercocebus_atys
ENSXMAG00000020950	lsm12b	100	83.673	ENSCLAG00000015759	LSM12	100	84.545	Chinchilla_lanigera
ENSXMAG00000020950	lsm12b	100	84.694	ENSCSAG00000003486	LSM12	100	84.694	Chlorocebus_sabaeus
ENSXMAG00000020950	lsm12b	56	85.321	ENSCHOG00000001198	LSM12	100	85.321	Choloepus_hoffmanni
ENSXMAG00000020950	lsm12b	100	84.694	ENSCPBG00000027105	LSM12	100	84.694	Chrysemys_picta_bellii
ENSXMAG00000020950	lsm12b	100	84.184	ENSCANG00000043328	LSM12	100	85.455	Colobus_angolensis_palliatus
ENSXMAG00000020950	lsm12b	100	84.184	ENSCGRG00001002094	Lsm12	100	85.455	Cricetulus_griseus_chok1gshd
ENSXMAG00000020950	lsm12b	89	76.437	ENSCGRG00000004316	Lsm12	98	76.437	Cricetulus_griseus_crigri
ENSXMAG00000020950	lsm12b	100	96.429	ENSCSEG00000008434	lsm12b	100	96.429	Cynoglossus_semilaevis
ENSXMAG00000020950	lsm12b	100	99.490	ENSCVAG00000008755	lsm12b	100	99.490	Cyprinodon_variegatus
ENSXMAG00000020950	lsm12b	100	93.878	ENSDARG00000109510	lsm12b	100	93.878	Danio_rerio
ENSXMAG00000020950	lsm12b	100	86.224	ENSDARG00000028848	lsm12a	100	86.224	Danio_rerio
ENSXMAG00000020950	lsm12b	100	84.184	ENSDNOG00000002418	LSM12	91	84.184	Dasypus_novemcinctus
ENSXMAG00000020950	lsm12b	100	84.184	ENSDORG00000016381	Lsm12	100	85.455	Dipodomys_ordii
ENSXMAG00000020950	lsm12b	73	32.911	FBgn0036057	CG14164	83	32.911	Drosophila_melanogaster
ENSXMAG00000020950	lsm12b	83	33.735	FBgn0030364	Lsm12	76	34.337	Drosophila_melanogaster
ENSXMAG00000020950	lsm12b	88	75.723	ENSETEG00000011012	-	99	75.723	Echinops_telfairi
ENSXMAG00000020950	lsm12b	100	83.673	ENSETEG00000008374	LSM12	100	83.673	Echinops_telfairi
ENSXMAG00000020950	lsm12b	85	66.467	ENSEBUG00000016299	lsm12a	92	66.467	Eptatretus_burgeri
ENSXMAG00000020950	lsm12b	100	84.184	ENSEASG00005010155	LSM12	100	84.184	Equus_asinus_asinus
ENSXMAG00000020950	lsm12b	100	84.184	ENSECAG00000009071	LSM12	100	85.455	Equus_caballus
ENSXMAG00000020950	lsm12b	78	84.314	ENSEEUG00000002419	-	100	84.314	Erinaceus_europaeus
ENSXMAG00000020950	lsm12b	100	92.857	ENSELUG00000000256	-	100	92.857	Esox_lucius
ENSXMAG00000020950	lsm12b	100	94.388	ENSELUG00000015538	lsm12b	100	89.796	Esox_lucius
ENSXMAG00000020950	lsm12b	100	84.184	ENSFCAG00000037021	LSM12	100	84.184	Felis_catus
ENSXMAG00000020950	lsm12b	80	80.769	ENSFDAG00000008954	LSM12	91	80.769	Fukomys_damarensis
ENSXMAG00000020950	lsm12b	100	98.980	ENSFHEG00000019913	lsm12b	100	98.980	Fundulus_heteroclitus
ENSXMAG00000020950	lsm12b	81	96.835	ENSGMOG00000015449	lsm12b	100	96.835	Gadus_morhua
ENSXMAG00000020950	lsm12b	78	84.967	ENSGALG00000039803	LSM12	100	84.967	Gallus_gallus
ENSXMAG00000020950	lsm12b	100	100.000	ENSGAFG00000011829	lsm12b	100	100.000	Gambusia_affinis
ENSXMAG00000020950	lsm12b	81	97.468	ENSGACG00000003428	lsm12b	100	97.468	Gasterosteus_aculeatus
ENSXMAG00000020950	lsm12b	100	83.673	ENSGAGG00000021965	LSM12	100	83.673	Gopherus_agassizii
ENSXMAG00000020950	lsm12b	100	84.184	ENSGGOG00000010589	-	100	85.455	Gorilla_gorilla
ENSXMAG00000020950	lsm12b	85	95.808	ENSHBUG00000007667	lsm12b	74	95.808	Haplochromis_burtoni
ENSXMAG00000020950	lsm12b	100	84.184	ENSHGLG00000011411	LSM12	100	85.455	Heterocephalus_glaber_female
ENSXMAG00000020950	lsm12b	79	83.766	ENSHGLG00100000241	LSM12	82	83.766	Heterocephalus_glaber_male
ENSXMAG00000020950	lsm12b	100	94.898	ENSHCOG00000002094	lsm12b	100	94.898	Hippocampus_comes
ENSXMAG00000020950	lsm12b	100	92.857	ENSIPUG00000014800	lsm12	100	92.857	Ictalurus_punctatus
ENSXMAG00000020950	lsm12b	99	84.021	ENSIPUG00000008936	lsm12a	99	84.021	Ictalurus_punctatus
ENSXMAG00000020950	lsm12b	100	84.184	ENSSTOG00000007403	LSM12	100	85.455	Ictidomys_tridecemlineatus
ENSXMAG00000020950	lsm12b	100	83.163	ENSJJAG00000004364	-	100	84.545	Jaculus_jaculus
ENSXMAG00000020950	lsm12b	80	72.327	ENSJJAG00000014652	-	95	72.327	Jaculus_jaculus
ENSXMAG00000020950	lsm12b	96	74.737	ENSJJAG00000011793	-	100	74.737	Jaculus_jaculus
ENSXMAG00000020950	lsm12b	85	97.006	ENSKMAG00000007704	lsm12b	56	97.006	Kryptolebias_marmoratus
ENSXMAG00000020950	lsm12b	100	97.449	ENSLBEG00000027999	lsm12b	100	97.449	Labrus_bergylta
ENSXMAG00000020950	lsm12b	100	86.224	ENSLACG00000015981	LSM12	100	86.224	Latimeria_chalumnae
ENSXMAG00000020950	lsm12b	100	90.816	ENSLOCG00000013079	lsm12b	99	90.816	Lepisosteus_oculatus
ENSXMAG00000020950	lsm12b	100	84.184	ENSLAFG00000005202	LSM12	100	84.184	Loxodonta_africana
ENSXMAG00000020950	lsm12b	100	84.184	ENSMFAG00000031376	LSM12	100	85.455	Macaca_fascicularis
ENSXMAG00000020950	lsm12b	100	84.184	ENSMMUG00000006804	LSM12	100	85.455	Macaca_mulatta
ENSXMAG00000020950	lsm12b	65	73.563	ENSMMUG00000042106	-	100	73.563	Macaca_mulatta
ENSXMAG00000020950	lsm12b	100	84.184	ENSMNEG00000030594	-	100	85.455	Macaca_nemestrina
ENSXMAG00000020950	lsm12b	100	84.184	ENSMLEG00000039934	LSM12	100	85.455	Mandrillus_leucophaeus
ENSXMAG00000020950	lsm12b	100	97.449	ENSMAMG00000004279	lsm12b	100	97.449	Mastacembelus_armatus
ENSXMAG00000020950	lsm12b	100	96.429	ENSMZEG00005005754	lsm12b	100	96.429	Maylandia_zebra
ENSXMAG00000020950	lsm12b	100	84.694	ENSMICG00000037219	LSM12	100	86.364	Microcebus_murinus
ENSXMAG00000020950	lsm12b	100	72.449	ENSMOCG00000017015	-	86	72.449	Microtus_ochrogaster
ENSXMAG00000020950	lsm12b	100	84.184	ENSMOCG00000019878	-	100	85.455	Microtus_ochrogaster
ENSXMAG00000020950	lsm12b	100	97.449	ENSMMOG00000020848	lsm12b	100	97.449	Mola_mola
ENSXMAG00000020950	lsm12b	100	97.449	ENSMALG00000007578	lsm12b	100	97.449	Monopterus_albus
ENSXMAG00000020950	lsm12b	100	83.673	MGP_CAROLIEiJ_G0017241	Lsm12	100	84.545	Mus_caroli
ENSXMAG00000020950	lsm12b	100	84.184	ENSMUSG00000020922	Lsm12	100	85.455	Mus_musculus
ENSXMAG00000020950	lsm12b	100	77.465	MGP_PahariEiJ_G0018371	Lsm12	100	85.455	Mus_pahari
ENSXMAG00000020950	lsm12b	100	83.673	MGP_SPRETEiJ_G0018084	Lsm12	99	86.111	Mus_spretus
ENSXMAG00000020950	lsm12b	100	84.694	ENSMLUG00000006391	LSM12	100	84.694	Myotis_lucifugus
ENSXMAG00000020950	lsm12b	100	60.099	ENSNGAG00000015429	-	100	60.099	Nannospalax_galili
ENSXMAG00000020950	lsm12b	100	84.184	ENSNGAG00000001870	Lsm12	100	85.455	Nannospalax_galili
ENSXMAG00000020950	lsm12b	100	96.429	ENSNBRG00000006266	lsm12b	100	96.429	Neolamprologus_brichardi
ENSXMAG00000020950	lsm12b	100	84.184	ENSNLEG00000005580	-	100	85.455	Nomascus_leucogenys
ENSXMAG00000020950	lsm12b	85	83.735	ENSMEUG00000007501	-	100	83.735	Notamacropus_eugenii
ENSXMAG00000020950	lsm12b	100	84.184	ENSOPRG00000008552	LSM12	100	84.184	Ochotona_princeps
ENSXMAG00000020950	lsm12b	100	76.531	ENSODEG00000007886	-	74	76.531	Octodon_degus
ENSXMAG00000020950	lsm12b	99	84.021	ENSODEG00000017998	-	99	84.021	Octodon_degus
ENSXMAG00000020950	lsm12b	100	96.429	ENSONIG00000007933	lsm12b	100	96.429	Oreochromis_niloticus
ENSXMAG00000020950	lsm12b	99	78.462	ENSOCUG00000027889	-	100	78.462	Oryctolagus_cuniculus
ENSXMAG00000020950	lsm12b	100	82.412	ENSOCUG00000008566	-	100	82.412	Oryctolagus_cuniculus
ENSXMAG00000020950	lsm12b	99	77.949	ENSOCUG00000024823	-	100	77.949	Oryctolagus_cuniculus
ENSXMAG00000020950	lsm12b	99	78.974	ENSOCUG00000021254	-	100	78.974	Oryctolagus_cuniculus
ENSXMAG00000020950	lsm12b	100	96.429	ENSORLG00000011310	lsm12b	100	96.429	Oryzias_latipes
ENSXMAG00000020950	lsm12b	100	96.429	ENSORLG00020002060	lsm12b	92	96.429	Oryzias_latipes_hni
ENSXMAG00000020950	lsm12b	100	96.429	ENSORLG00015001647	lsm12b	92	96.429	Oryzias_latipes_hsok
ENSXMAG00000020950	lsm12b	100	96.939	ENSOMEG00000006184	lsm12b	92	96.939	Oryzias_melastigma
ENSXMAG00000020950	lsm12b	100	84.694	ENSOGAG00000010489	LSM12	100	84.694	Otolemur_garnettii
ENSXMAG00000020950	lsm12b	100	81.188	ENSOARG00000006589	LSM12	100	81.188	Ovis_aries
ENSXMAG00000020950	lsm12b	100	75.000	ENSPPAG00000034974	-	100	75.000	Pan_paniscus
ENSXMAG00000020950	lsm12b	100	84.184	ENSPPRG00000023420	LSM12	100	84.184	Panthera_pardus
ENSXMAG00000020950	lsm12b	72	83.636	ENSPTIG00000014850	-	100	83.636	Panthera_tigris_altaica
ENSXMAG00000020950	lsm12b	78	84.314	ENSPTIG00000012704	-	82	84.314	Panthera_tigris_altaica
ENSXMAG00000020950	lsm12b	100	84.184	ENSPTRG00000009261	LSM12	100	85.455	Pan_troglodytes
ENSXMAG00000020950	lsm12b	100	84.184	ENSPANG00000021315	-	100	85.455	Papio_anubis
ENSXMAG00000020950	lsm12b	100	92.857	ENSPKIG00000021058	lsm12b	100	92.857	Paramormyrops_kingsleyae
ENSXMAG00000020950	lsm12b	100	83.673	ENSPKIG00000017932	-	100	83.673	Paramormyrops_kingsleyae
ENSXMAG00000020950	lsm12b	100	96.429	ENSPMGG00000021344	lsm12b	100	96.429	Periophthalmus_magnuspinnatus
ENSXMAG00000020950	lsm12b	100	84.184	ENSPEMG00000012199	Lsm12	100	85.455	Peromyscus_maniculatus_bairdii
ENSXMAG00000020950	lsm12b	89	67.429	ENSPMAG00000005461	lsm12a	99	67.429	Petromyzon_marinus
ENSXMAG00000020950	lsm12b	100	84.184	ENSPCIG00000020244	LSM12	100	84.184	Phascolarctos_cinereus
ENSXMAG00000020950	lsm12b	100	98.980	ENSPFOG00000015930	lsm12b	100	98.980	Poecilia_formosa
ENSXMAG00000020950	lsm12b	100	98.980	ENSPLAG00000021089	lsm12b	100	98.980	Poecilia_latipinna
ENSXMAG00000020950	lsm12b	100	98.980	ENSPMEG00000012961	lsm12b	100	98.980	Poecilia_mexicana
ENSXMAG00000020950	lsm12b	87	100.000	ENSPREG00000010236	lsm12b	95	100.000	Poecilia_reticulata
ENSXMAG00000020950	lsm12b	100	84.184	ENSPPYG00000008344	LSM12	100	84.184	Pongo_abelii
ENSXMAG00000020950	lsm12b	81	84.277	ENSPCAG00000008790	LSM12	100	84.277	Procavia_capensis
ENSXMAG00000020950	lsm12b	100	84.184	ENSPCOG00000027951	LSM12	100	85.455	Propithecus_coquereli
ENSXMAG00000020950	lsm12b	100	84.184	ENSPVAG00000013706	LSM12	100	84.184	Pteropus_vampyrus
ENSXMAG00000020950	lsm12b	100	96.429	ENSPNYG00000003386	lsm12b	100	96.429	Pundamilia_nyererei
ENSXMAG00000020950	lsm12b	100	93.367	ENSPNAG00000004186	lsm12b	100	93.367	Pygocentrus_nattereri
ENSXMAG00000020950	lsm12b	100	84.694	ENSPNAG00000018435	lsm12a	100	84.694	Pygocentrus_nattereri
ENSXMAG00000020950	lsm12b	100	84.184	ENSRNOG00000020894	Lsm12	100	84.184	Rattus_norvegicus
ENSXMAG00000020950	lsm12b	100	84.184	ENSRBIG00000027910	LSM12	100	85.455	Rhinopithecus_bieti
ENSXMAG00000020950	lsm12b	99	52.577	ENSRROG00000000537	-	99	52.577	Rhinopithecus_roxellana
ENSXMAG00000020950	lsm12b	100	84.184	ENSRROG00000045530	-	100	85.455	Rhinopithecus_roxellana
ENSXMAG00000020950	lsm12b	100	84.184	ENSSBOG00000025310	LSM12	100	85.455	Saimiri_boliviensis_boliviensis
ENSXMAG00000020950	lsm12b	81	82.911	ENSSHAG00000014914	LSM12	100	82.911	Sarcophilus_harrisii
ENSXMAG00000020950	lsm12b	100	92.857	ENSSFOG00015020392	lsm12a	100	92.857	Scleropages_formosus
ENSXMAG00000020950	lsm12b	100	93.367	ENSSFOG00015009612	lsm12	100	93.367	Scleropages_formosus
ENSXMAG00000020950	lsm12b	100	97.449	ENSSMAG00000008089	lsm12b	100	97.449	Scophthalmus_maximus
ENSXMAG00000020950	lsm12b	100	97.449	ENSSDUG00000012711	lsm12b	100	97.449	Seriola_dumerili
ENSXMAG00000020950	lsm12b	100	97.449	ENSSLDG00000007404	lsm12b	100	97.449	Seriola_lalandi_dorsalis
ENSXMAG00000020950	lsm12b	78	83.660	ENSSARG00000005537	LSM12	100	83.660	Sorex_araneus
ENSXMAG00000020950	lsm12b	100	84.694	ENSSPUG00000011984	LSM12	100	84.694	Sphenodon_punctatus
ENSXMAG00000020950	lsm12b	100	97.959	ENSSPAG00000017058	lsm12b	100	97.959	Stegastes_partitus
ENSXMAG00000020950	lsm12b	100	84.184	ENSSSCG00000032394	LSM12	100	84.184	Sus_scrofa
ENSXMAG00000020950	lsm12b	100	96.429	ENSTRUG00000007121	lsm12b	100	96.429	Takifugu_rubripes
ENSXMAG00000020950	lsm12b	100	95.918	ENSTNIG00000014436	lsm12b	100	95.918	Tetraodon_nigroviridis
ENSXMAG00000020950	lsm12b	100	83.673	ENSTBEG00000012523	-	100	83.673	Tupaia_belangeri
ENSXMAG00000020950	lsm12b	100	81.633	ENSTBEG00000012392	-	100	81.633	Tupaia_belangeri
ENSXMAG00000020950	lsm12b	100	84.184	ENSTTRG00000010433	LSM12	100	84.184	Tursiops_truncatus
ENSXMAG00000020950	lsm12b	100	84.184	ENSUAMG00000006313	LSM12	100	84.184	Ursus_americanus
ENSXMAG00000020950	lsm12b	81	81.646	ENSUMAG00000012987	LSM12	90	81.646	Ursus_maritimus
ENSXMAG00000020950	lsm12b	100	79.592	ENSVPAG00000011145	LSM12	100	79.592	Vicugna_pacos
ENSXMAG00000020950	lsm12b	100	84.184	ENSVVUG00000017581	LSM12	100	84.184	Vulpes_vulpes
ENSXMAG00000020950	lsm12b	82	60.625	ENSXETG00000003371	lsm12	77	60.625	Xenopus_tropicalis
ENSXMAG00000020950	lsm12b	100	100.000	ENSXCOG00000003994	lsm12b	100	100.000	Xiphophorus_couchianus