EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000021125 (Gene tree)
Gene ID: 102229535
Gene Symbol: smfn
Alias: zgc:73191
Full Name: RNA exonuclease 2
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 12485 bases
Position: chr11:32195430-32207914
Accession: 102229535
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000032850	RNase_T	PF00929.24	3.3e-34	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000023357	-	2944	XM_005811752	ENSXMAP00000032850	312 (aa)	XP_005811809	UPI000C6CC5C7

Gene Model

Click here to download ENSXMAG00000021125's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000021125's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000021125	smfn	64	76.119	ENSG00000076043	REXO2	99	76.882	Homo_sapiens
ENSXMAG00000021125	smfn	64	77.114	ENSAMEG00000013263	REXO2	85	77.114	Ailuropoda_melanoleuca
ENSXMAG00000021125	smfn	60	81.720	ENSACIG00000023553	smfn	100	81.720	Amphilophus_citrinellus
ENSXMAG00000021125	smfn	88	66.065	ENSAPEG00000012435	smfn	99	66.065	Amphiprion_percula
ENSXMAG00000021125	smfn	67	80.282	ENSATEG00000015385	smfn	76	80.282	Anabas_testudineus
ENSXMAG00000021125	smfn	65	72.414	ENSAPLG00000005045	REXO2	99	72.414	Anas_platyrhynchos
ENSXMAG00000021125	smfn	59	69.945	ENSACAG00000011631	REXO2	86	69.945	Anolis_carolinensis
ENSXMAG00000021125	smfn	64	76.617	ENSANAG00000020834	REXO2	85	76.617	Aotus_nancymaae
ENSXMAG00000021125	smfn	89	66.426	ENSACLG00000024566	smfn	96	83.152	Astatotilapia_calliptera
ENSXMAG00000021125	smfn	64	77.114	ENSBTAG00000005843	REXO2	85	77.114	Bos_taurus
ENSXMAG00000021125	smfn	58	49.724	WBGene00007429	C08B6.8	88	56.522	Caenorhabditis_elegans
ENSXMAG00000021125	smfn	64	75.622	ENSCJAG00000012434	REXO2	85	75.622	Callithrix_jacchus
ENSXMAG00000021125	smfn	70	72.477	ENSCAFG00000013511	REXO2	92	72.477	Canis_familiaris
ENSXMAG00000021125	smfn	70	73.394	ENSCAFG00020002513	REXO2	92	73.394	Canis_lupus_dingo
ENSXMAG00000021125	smfn	64	77.114	ENSCHIG00000009264	REXO2	85	77.114	Capra_hircus
ENSXMAG00000021125	smfn	64	76.617	ENSTSYG00000002237	REXO2	85	76.617	Carlito_syrichta
ENSXMAG00000021125	smfn	62	66.321	ENSTSYG00000027948	-	99	66.321	Carlito_syrichta
ENSXMAG00000021125	smfn	60	77.419	ENSCAPG00000006093	REXO2	99	77.419	Cavia_aperea
ENSXMAG00000021125	smfn	64	76.617	ENSCPOG00000010548	REXO2	85	76.617	Cavia_porcellus
ENSXMAG00000021125	smfn	64	76.617	ENSCCAG00000034979	REXO2	85	76.617	Cebus_capucinus
ENSXMAG00000021125	smfn	64	76.119	ENSCATG00000015278	REXO2	85	76.119	Cercocebus_atys
ENSXMAG00000021125	smfn	64	76.617	ENSCLAG00000011195	REXO2	85	76.617	Chinchilla_lanigera
ENSXMAG00000021125	smfn	64	76.119	ENSCSAG00000002754	REXO2	85	76.119	Chlorocebus_sabaeus
ENSXMAG00000021125	smfn	64	75.000	ENSCHOG00000000642	-	84	75.000	Choloepus_hoffmanni
ENSXMAG00000021125	smfn	64	54.500	ENSCING00000009858	-	97	54.500	Ciona_intestinalis
ENSXMAG00000021125	smfn	64	76.119	ENSCANG00000034756	REXO2	85	76.119	Colobus_angolensis_palliatus
ENSXMAG00000021125	smfn	64	75.377	ENSCGRG00001010922	-	98	74.627	Cricetulus_griseus_chok1gshd
ENSXMAG00000021125	smfn	64	75.124	ENSCGRG00001013673	-	98	75.124	Cricetulus_griseus_chok1gshd
ENSXMAG00000021125	smfn	64	76.617	ENSCGRG00001019814	-	85	76.617	Cricetulus_griseus_chok1gshd
ENSXMAG00000021125	smfn	64	76.617	ENSCGRG00000006235	Rexo2	85	76.617	Cricetulus_griseus_crigri
ENSXMAG00000021125	smfn	76	72.269	ENSCSEG00000007214	smfn	85	72.269	Cynoglossus_semilaevis
ENSXMAG00000021125	smfn	59	90.164	ENSCVAG00000012008	smfn	99	90.164	Cyprinodon_variegatus
ENSXMAG00000021125	smfn	65	76.847	ENSDARG00000009806	smfn	77	76.847	Danio_rerio
ENSXMAG00000021125	smfn	56	81.034	ENSDNOG00000046533	REXO2	83	81.034	Dasypus_novemcinctus
ENSXMAG00000021125	smfn	64	76.617	ENSDORG00000011255	Rexo2	85	76.617	Dipodomys_ordii
ENSXMAG00000021125	smfn	62	61.140	ENSDORG00000025142	-	86	60.101	Dipodomys_ordii
ENSXMAG00000021125	smfn	59	54.839	FBgn0039115	CG10214	88	54.839	Drosophila_melanogaster
ENSXMAG00000021125	smfn	58	76.243	ENSEBUG00000013964	REXO2	62	76.243	Eptatretus_burgeri
ENSXMAG00000021125	smfn	64	77.114	ENSEASG00005006674	REXO2	85	77.114	Equus_asinus_asinus
ENSXMAG00000021125	smfn	64	77.114	ENSECAG00000005988	REXO2	85	77.114	Equus_caballus
ENSXMAG00000021125	smfn	61	80.628	ENSELUG00000020072	smfn	66	80.628	Esox_lucius
ENSXMAG00000021125	smfn	64	77.114	ENSFCAG00000018632	REXO2	85	77.114	Felis_catus
ENSXMAG00000021125	smfn	60	74.332	ENSFALG00000010044	REXO2	93	74.332	Ficedula_albicollis
ENSXMAG00000021125	smfn	64	76.617	ENSFDAG00000011764	REXO2	85	76.617	Fukomys_damarensis
ENSXMAG00000021125	smfn	60	80.214	ENSGMOG00000006370	smfn	97	80.214	Gadus_morhua
ENSXMAG00000021125	smfn	63	76.410	ENSGALG00000035980	REXO2	85	75.758	Gallus_gallus
ENSXMAG00000021125	smfn	88	93.907	ENSGAFG00000015349	smfn	99	93.907	Gambusia_affinis
ENSXMAG00000021125	smfn	62	84.021	ENSGACG00000020096	smfn	96	84.021	Gasterosteus_aculeatus
ENSXMAG00000021125	smfn	62	77.835	ENSGAGG00000021126	REXO2	84	77.835	Gopherus_agassizii
ENSXMAG00000021125	smfn	64	76.119	ENSGGOG00000023267	REXO2	85	76.119	Gorilla_gorilla
ENSXMAG00000021125	smfn	88	49.638	ENSHBUG00000020097	REXO2	100	49.638	Haplochromis_burtoni
ENSXMAG00000021125	smfn	64	76.119	ENSHGLG00000013556	REXO2	85	76.119	Heterocephalus_glaber_female
ENSXMAG00000021125	smfn	64	76.617	ENSHGLG00100005257	REXO2	85	76.617	Heterocephalus_glaber_male
ENSXMAG00000021125	smfn	57	77.401	ENSHCOG00000007122	smfn	99	77.401	Hippocampus_comes
ENSXMAG00000021125	smfn	64	79.000	ENSIPUG00000020440	rexo2	74	79.000	Ictalurus_punctatus
ENSXMAG00000021125	smfn	64	76.617	ENSSTOG00000012465	REXO2	85	76.617	Ictidomys_tridecemlineatus
ENSXMAG00000021125	smfn	65	54.455	ENSJJAG00000022605	-	81	54.455	Jaculus_jaculus
ENSXMAG00000021125	smfn	64	76.617	ENSJJAG00000013710	-	85	76.617	Jaculus_jaculus
ENSXMAG00000021125	smfn	88	66.784	ENSKMAG00000016795	smfn	100	67.491	Kryptolebias_marmoratus
ENSXMAG00000021125	smfn	58	81.868	ENSLBEG00000006021	smfn	96	81.868	Labrus_bergylta
ENSXMAG00000021125	smfn	63	68.000	ENSLACG00000018623	REXO2	81	68.000	Latimeria_chalumnae
ENSXMAG00000021125	smfn	64	77.114	ENSLOCG00000002389	smfn	96	77.114	Lepisosteus_oculatus
ENSXMAG00000021125	smfn	64	76.884	ENSLAFG00000012451	REXO2	85	76.119	Loxodonta_africana
ENSXMAG00000021125	smfn	64	76.119	ENSMFAG00000041155	REXO2	85	76.119	Macaca_fascicularis
ENSXMAG00000021125	smfn	64	76.119	ENSMMUG00000012269	REXO2	85	76.119	Macaca_mulatta
ENSXMAG00000021125	smfn	64	76.119	ENSMNEG00000033379	REXO2	85	76.119	Macaca_nemestrina
ENSXMAG00000021125	smfn	64	76.119	ENSMLEG00000036571	REXO2	85	76.119	Mandrillus_leucophaeus
ENSXMAG00000021125	smfn	88	66.071	ENSMAMG00000021209	smfn	99	66.071	Mastacembelus_armatus
ENSXMAG00000021125	smfn	89	66.426	ENSMZEG00005020730	REXO2	97	66.426	Maylandia_zebra
ENSXMAG00000021125	smfn	89	66.426	ENSMZEG00005023224	-	97	66.426	Maylandia_zebra
ENSXMAG00000021125	smfn	51	73.292	ENSMGAG00000003026	REXO2	99	73.292	Meleagris_gallopavo
ENSXMAG00000021125	smfn	64	76.617	ENSMAUG00000014576	Rexo2	85	76.617	Mesocricetus_auratus
ENSXMAG00000021125	smfn	64	76.617	ENSMICG00000010094	REXO2	85	76.617	Microcebus_murinus
ENSXMAG00000021125	smfn	64	76.617	ENSMOCG00000009016	Rexo2	85	76.617	Microtus_ochrogaster
ENSXMAG00000021125	smfn	64	81.000	ENSMMOG00000006430	smfn	74	81.000	Mola_mola
ENSXMAG00000021125	smfn	64	76.119	ENSMODG00000013913	REXO2	85	76.119	Monodelphis_domestica
ENSXMAG00000021125	smfn	73	73.820	ENSMALG00000018130	smfn	67	73.820	Monopterus_albus
ENSXMAG00000021125	smfn	64	76.000	MGP_CAROLIEiJ_G0032166	Rexo2	84	76.000	Mus_caroli
ENSXMAG00000021125	smfn	64	76.000	ENSMUSG00000032026	Rexo2	84	76.000	Mus_musculus
ENSXMAG00000021125	smfn	64	76.000	MGP_PahariEiJ_G0015034	Rexo2	84	76.000	Mus_pahari
ENSXMAG00000021125	smfn	64	76.000	MGP_SPRETEiJ_G0033305	Rexo2	84	76.000	Mus_spretus
ENSXMAG00000021125	smfn	64	77.114	ENSMPUG00000003947	REXO2	85	77.114	Mustela_putorius_furo
ENSXMAG00000021125	smfn	64	75.622	ENSMLUG00000009030	REXO2	85	75.622	Myotis_lucifugus
ENSXMAG00000021125	smfn	64	76.884	ENSNGAG00000008819	Rexo2	98	76.119	Nannospalax_galili
ENSXMAG00000021125	smfn	60	81.720	ENSNBRG00000006529	smfn	97	81.720	Neolamprologus_brichardi
ENSXMAG00000021125	smfn	64	76.119	ENSNLEG00000029745	REXO2	85	76.119	Nomascus_leucogenys
ENSXMAG00000021125	smfn	64	75.622	ENSMEUG00000011558	REXO2	92	75.622	Notamacropus_eugenii
ENSXMAG00000021125	smfn	64	52.736	ENSOPRG00000011076	REXO2	85	52.736	Ochotona_princeps
ENSXMAG00000021125	smfn	60	77.419	ENSODEG00000009750	-	99	77.419	Octodon_degus
ENSXMAG00000021125	smfn	57	64.407	ENSODEG00000016046	-	88	64.407	Octodon_degus
ENSXMAG00000021125	smfn	65	82.178	ENSONIG00000001954	smfn	87	82.178	Oreochromis_niloticus
ENSXMAG00000021125	smfn	64	76.884	ENSOANG00000001754	REXO2	84	76.119	Ornithorhynchus_anatinus
ENSXMAG00000021125	smfn	64	76.617	ENSOCUG00000004274	REXO2	80	76.617	Oryctolagus_cuniculus
ENSXMAG00000021125	smfn	85	66.045	ENSORLG00000005119	smfn	85	66.045	Oryzias_latipes
ENSXMAG00000021125	smfn	85	66.418	ENSORLG00020010121	smfn	85	66.418	Oryzias_latipes_hni
ENSXMAG00000021125	smfn	85	67.037	ENSORLG00015015699	smfn	85	67.037	Oryzias_latipes_hsok
ENSXMAG00000021125	smfn	80	63.780	ENSOMEG00000016878	REXO2	93	63.780	Oryzias_melastigma
ENSXMAG00000021125	smfn	64	76.617	ENSOGAG00000016860	REXO2	85	76.617	Otolemur_garnettii
ENSXMAG00000021125	smfn	64	77.889	ENSOARG00000001040	REXO2	94	77.114	Ovis_aries
ENSXMAG00000021125	smfn	64	76.119	ENSPPAG00000039849	REXO2	85	76.119	Pan_paniscus
ENSXMAG00000021125	smfn	64	77.114	ENSPPRG00000007255	REXO2	85	77.114	Panthera_pardus
ENSXMAG00000021125	smfn	60	77.957	ENSPTIG00000015578	REXO2	99	77.957	Panthera_tigris_altaica
ENSXMAG00000021125	smfn	64	76.119	ENSPTRG00000004306	REXO2	85	76.119	Pan_troglodytes
ENSXMAG00000021125	smfn	64	76.119	ENSPANG00000010675	REXO2	85	76.119	Papio_anubis
ENSXMAG00000021125	smfn	86	64.727	ENSPKIG00000000911	smfn	96	64.727	Paramormyrops_kingsleyae
ENSXMAG00000021125	smfn	75	68.240	ENSPSIG00000005151	REXO2	85	68.240	Pelodiscus_sinensis
ENSXMAG00000021125	smfn	59	81.967	ENSPMGG00000007442	smfn	97	81.967	Periophthalmus_magnuspinnatus
ENSXMAG00000021125	smfn	64	62.000	ENSPEMG00000001421	Rexo2	84	61.692	Peromyscus_maniculatus_bairdii
ENSXMAG00000021125	smfn	64	76.500	ENSPCIG00000011227	REXO2	53	76.500	Phascolarctos_cinereus
ENSXMAG00000021125	smfn	88	91.786	ENSPFOG00000017861	smfn	99	94.527	Poecilia_formosa
ENSXMAG00000021125	smfn	81	88.327	ENSPLAG00000007327	REXO2	98	88.327	Poecilia_latipinna
ENSXMAG00000021125	smfn	88	91.786	ENSPMEG00000017343	smfn	100	91.786	Poecilia_mexicana
ENSXMAG00000021125	smfn	88	91.786	ENSPREG00000016438	smfn	100	91.786	Poecilia_reticulata
ENSXMAG00000021125	smfn	64	76.119	ENSPPYG00000003895	REXO2	85	76.119	Pongo_abelii
ENSXMAG00000021125	smfn	64	76.382	ENSPCAG00000005237	REXO2	85	75.622	Procavia_capensis
ENSXMAG00000021125	smfn	52	80.124	ENSPCOG00000027639	REXO2	83	80.124	Propithecus_coquereli
ENSXMAG00000021125	smfn	64	65.517	ENSPVAG00000005295	REXO2	85	65.517	Pteropus_vampyrus
ENSXMAG00000021125	smfn	89	66.065	ENSPNYG00000018401	smfn	97	66.065	Pundamilia_nyererei
ENSXMAG00000021125	smfn	63	80.000	ENSPNAG00000005290	smfn	73	79.798	Pygocentrus_nattereri
ENSXMAG00000021125	smfn	64	76.500	ENSRNOG00000018939	Rexo2	84	76.500	Rattus_norvegicus
ENSXMAG00000021125	smfn	64	76.119	ENSRBIG00000037809	REXO2	85	76.119	Rhinopithecus_bieti
ENSXMAG00000021125	smfn	64	76.119	ENSRROG00000038928	REXO2	85	76.119	Rhinopithecus_roxellana
ENSXMAG00000021125	smfn	60	43.299	YLR059C	REX2	72	43.077	Saccharomyces_cerevisiae
ENSXMAG00000021125	smfn	64	76.617	ENSSBOG00000028651	REXO2	85	76.617	Saimiri_boliviensis_boliviensis
ENSXMAG00000021125	smfn	64	76.119	ENSSHAG00000008008	REXO2	86	76.119	Sarcophilus_harrisii
ENSXMAG00000021125	smfn	59	77.297	ENSSFOG00015022414	smfn	98	77.297	Scleropages_formosus
ENSXMAG00000021125	smfn	86	65.455	ENSSMAG00000003168	smfn	97	65.455	Scophthalmus_maximus
ENSXMAG00000021125	smfn	88	64.085	ENSSDUG00000015624	smfn	99	64.085	Seriola_dumerili
ENSXMAG00000021125	smfn	88	64.311	ENSSLDG00000014005	smfn	99	64.311	Seriola_lalandi_dorsalis
ENSXMAG00000021125	smfn	51	71.519	ENSSPUG00000006005	REXO2	85	71.519	Sphenodon_punctatus
ENSXMAG00000021125	smfn	58	85.165	ENSSPAG00000001530	smfn	98	85.165	Stegastes_partitus
ENSXMAG00000021125	smfn	64	77.114	ENSSSCG00000015056	REXO2	85	77.114	Sus_scrofa
ENSXMAG00000021125	smfn	63	73.737	ENSTGUG00000000121	REXO2	84	74.619	Taeniopygia_guttata
ENSXMAG00000021125	smfn	75	71.250	ENSTRUG00000021529	smfn	88	71.250	Takifugu_rubripes
ENSXMAG00000021125	smfn	60	82.979	ENSTNIG00000008588	smfn	86	82.474	Tetraodon_nigroviridis
ENSXMAG00000021125	smfn	64	76.617	ENSTBEG00000017040	REXO2	85	76.617	Tupaia_belangeri
ENSXMAG00000021125	smfn	64	76.617	ENSTTRG00000014928	REXO2	85	76.617	Tursiops_truncatus
ENSXMAG00000021125	smfn	64	71.782	ENSUAMG00000019096	REXO2	83	80.745	Ursus_americanus
ENSXMAG00000021125	smfn	64	77.114	ENSUMAG00000003770	REXO2	85	77.114	Ursus_maritimus
ENSXMAG00000021125	smfn	59	60.326	ENSVPAG00000006301	REXO2	98	60.326	Vicugna_pacos
ENSXMAG00000021125	smfn	70	73.059	ENSVVUG00000025223	REXO2	92	73.059	Vulpes_vulpes
ENSXMAG00000021125	smfn	63	76.410	ENSXETG00000012648	rexo2	80	76.020	Xenopus_tropicalis
ENSXMAG00000021125	smfn	60	98.925	ENSXCOG00000018838	smfn	95	98.925	Xiphophorus_couchianus