EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000021129 (Gene tree)
Gene ID: 102217615
Gene Symbol: mbd4
Alias: -
Full Name: methyl-CpG binding domain 4%2C DNA glycosylase
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 7950 bases
Position: chr1:20588915-20596864
Accession: 102217615
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000033707	MBD	PF01429.19	8.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000032690	-	5564	-	ENSXMAP00000032704	297 (aa)	-	-
ENSXMAT00000029160	-	5661	XM_005805688	ENSXMAP00000033707	451 (aa)	XP_005805745	UPI0003B5F9A5
ENSXMAT00000037930	-	5456	-	ENSXMAP00000029015	417 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000021129's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000021129's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000021129	mbd4	60	66.981	ENSG00000129071	MBD4	65	78.698	Homo_sapiens
ENSXMAG00000021129	mbd4	100	61.966	ENSAPOG00000021668	mbd4	98	61.966	Acanthochromis_polyacanthus
ENSXMAG00000021129	mbd4	100	61.028	ENSAOCG00000001157	mbd4	98	61.028	Amphiprion_ocellaris
ENSXMAG00000021129	mbd4	100	61.456	ENSAPEG00000016131	mbd4	98	61.456	Amphiprion_percula
ENSXMAG00000021129	mbd4	98	63.377	ENSATEG00000014594	MBD4	86	63.158	Anabas_testudineus
ENSXMAG00000021129	mbd4	98	47.982	ENSAMXG00000017271	mbd4	92	47.758	Astyanax_mexicanus
ENSXMAG00000021129	mbd4	65	62.917	ENSCLAG00000008974	MBD4	50	62.917	Chinchilla_lanigera
ENSXMAG00000021129	mbd4	65	66.204	ENSDNOG00000049619	MBD4	50	66.204	Dasypus_novemcinctus
ENSXMAG00000021129	mbd4	86	34.096	ENSDORG00000000902	-	90	34.763	Dipodomys_ordii
ENSXMAG00000021129	mbd4	51	65.089	ENSEBUG00000010816	mbd4	52	65.089	Eptatretus_burgeri
ENSXMAG00000021129	mbd4	95	41.615	ENSEEUG00000011459	MBD4	54	80.690	Erinaceus_europaeus
ENSXMAG00000021129	mbd4	98	46.976	ENSELUG00000018483	MBD4	82	47.590	Esox_lucius
ENSXMAG00000021129	mbd4	98	47.718	ENSGMOG00000013830	mbd4	100	47.718	Gadus_morhua
ENSXMAG00000021129	mbd4	100	94.457	ENSGAFG00000016011	mbd4	100	94.457	Gambusia_affinis
ENSXMAG00000021129	mbd4	85	47.150	ENSGACG00000001970	-	80	47.423	Gasterosteus_aculeatus
ENSXMAG00000021129	mbd4	63	65.596	ENSGGOG00000010698	MBD4	53	65.596	Gorilla_gorilla
ENSXMAG00000021129	mbd4	65	61.667	ENSHGLG00000009034	MBD4	50	61.667	Heterocephalus_glaber_female
ENSXMAG00000021129	mbd4	65	61.667	ENSHGLG00100000135	MBD4	50	61.667	Heterocephalus_glaber_male
ENSXMAG00000021129	mbd4	100	63.830	ENSKMAG00000015015	mbd4	100	64.606	Kryptolebias_marmoratus
ENSXMAG00000021129	mbd4	98	54.825	ENSLBEG00000005669	MBD4	86	54.525	Labrus_bergylta
ENSXMAG00000021129	mbd4	98	43.028	ENSLOCG00000013054	MBD4	99	43.625	Lepisosteus_oculatus
ENSXMAG00000021129	mbd4	63	43.299	ENSMAMG00000024084	-	79	42.561	Mastacembelus_armatus
ENSXMAG00000021129	mbd4	54	79.882	ENSMODG00000006399	-	50	79.882	Monodelphis_domestica
ENSXMAG00000021129	mbd4	98	61.771	ENSMALG00000021517	mbd4	87	60.870	Monopterus_albus
ENSXMAG00000021129	mbd4	98	44.055	MGP_CAROLIEiJ_G0028760	Mbd4	86	42.745	Mus_caroli
ENSXMAG00000021129	mbd4	98	43.366	ENSMUSG00000030322	Mbd4	87	43.426	Mus_musculus
ENSXMAG00000021129	mbd4	98	43.927	MGP_PahariEiJ_G0022511	-	86	44.309	Mus_pahari
ENSXMAG00000021129	mbd4	98	45.257	MGP_SPRETEiJ_G0029788	Mbd4	87	44.444	Mus_spretus
ENSXMAG00000021129	mbd4	98	42.944	ENSMLUG00000014766	MBD4	90	42.137	Myotis_lucifugus
ENSXMAG00000021129	mbd4	98	57.749	ENSONIG00000017212	mbd4	100	57.537	Oreochromis_niloticus
ENSXMAG00000021129	mbd4	98	56.828	ENSORLG00000011049	mbd4	97	56.828	Oryzias_latipes
ENSXMAG00000021129	mbd4	98	56.608	ENSORLG00020020013	mbd4	97	56.608	Oryzias_latipes_hni
ENSXMAG00000021129	mbd4	98	56.044	ENSORLG00015015342	mbd4	97	56.044	Oryzias_latipes_hsok
ENSXMAG00000021129	mbd4	98	57.206	ENSOMEG00000008819	mbd4	91	57.206	Oryzias_melastigma
ENSXMAG00000021129	mbd4	99	45.223	ENSPKIG00000012306	MBD4	76	46.285	Paramormyrops_kingsleyae
ENSXMAG00000021129	mbd4	100	92.053	ENSPFOG00000014471	mbd4	100	92.053	Poecilia_formosa
ENSXMAG00000021129	mbd4	98	42.545	ENSPVAG00000005238	MBD4	85	42.147	Pteropus_vampyrus
ENSXMAG00000021129	mbd4	98	47.321	ENSPNAG00000000509	mbd4	94	47.973	Pygocentrus_nattereri
ENSXMAG00000021129	mbd4	65	79.290	ENSSHAG00000012953	MBD4	51	79.290	Sarcophilus_harrisii
ENSXMAG00000021129	mbd4	98	45.416	ENSSFOG00015016292	mbd4	95	46.567	Scleropages_formosus
ENSXMAG00000021129	mbd4	98	59.603	ENSSMAG00000013958	-	67	59.111	Scophthalmus_maximus
ENSXMAG00000021129	mbd4	98	64.381	ENSSDUG00000001365	mbd4	93	64.381	Seriola_dumerili
ENSXMAG00000021129	mbd4	85	60.102	ENSSLDG00000010295	MBD4	80	60.102	Seriola_lalandi_dorsalis
ENSXMAG00000021129	mbd4	100	57.395	ENSTRUG00000010124	mbd4	97	57.395	Takifugu_rubripes
ENSXMAG00000021129	mbd4	98	53.813	ENSTNIG00000017927	mbd4	100	53.595	Tetraodon_nigroviridis
ENSXMAG00000021129	mbd4	98	43.319	ENSXETG00000026622	mbd4	89	42.981	Xenopus_tropicalis