EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000022179 (Gene tree)
Gene ID: 102231109
Gene Symbol: -
Alias: RAB5CL|RABL
Full Name: ras-related protein Rab-5C
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 12919 bases
Position: chr10:7090893-7103811
Accession: 102231109
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000003280	MMR_HSR1	PF01926.23	0.00019	1	1
ENSXMAP00000033116	MMR_HSR1	PF01926.23	0.0002	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000003285	-	654	-	ENSXMAP00000003280	217 (aa)	-	M3ZM38
ENSXMAT00000033229	-	4720	XM_014473564	ENSXMAP00000033116	223 (aa)	XP_014329050	M4A759

Gene Model

Click here to download ENSXMAG00000022179's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma04144	Endocytosis	KEGG
xma04145	Phagosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000022179's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000022179	-	99	90.323	ENSG00000108774	RAB5C	100	96.000	Homo_sapiens
ENSXMAG00000022179	-	100	89.954	ENSAPOG00000016864	rab5c	99	89.954	Acanthochromis_polyacanthus
ENSXMAG00000022179	-	99	90.323	ENSAMEG00000006003	RAB5C	99	90.323	Ailuropoda_melanoleuca
ENSXMAG00000022179	-	100	89.498	ENSACIG00000010896	rab5c	99	89.498	Amphilophus_citrinellus
ENSXMAG00000022179	-	100	89.954	ENSAOCG00000016614	rab5c	99	89.954	Amphiprion_ocellaris
ENSXMAG00000022179	-	99	88.889	ENSAPEG00000017868	-	99	88.889	Amphiprion_percula
ENSXMAG00000022179	-	99	90.323	ENSATEG00000001937	rab5c	99	90.323	Anabas_testudineus
ENSXMAG00000022179	-	95	92.233	ENSANAG00000025390	RAB5C	100	92.233	Aotus_nancymaae
ENSXMAG00000022179	-	100	88.128	ENSACLG00000002706	rab5c	99	88.128	Astatotilapia_calliptera
ENSXMAG00000022179	-	97	92.130	ENSACLG00000008615	-	99	93.607	Astatotilapia_calliptera
ENSXMAG00000022179	-	95	88.571	ENSAMXG00000037267	-	99	88.571	Astyanax_mexicanus
ENSXMAG00000022179	-	100	90.455	ENSAMXG00000043717	rab5c	99	90.455	Astyanax_mexicanus
ENSXMAG00000022179	-	99	90.323	ENSBTAG00000006982	RAB5C	99	90.323	Bos_taurus
ENSXMAG00000022179	-	99	75.000	WBGene00004268	rab-5	99	75.000	Caenorhabditis_elegans
ENSXMAG00000022179	-	99	90.323	ENSCAFG00000015629	RAB5C	99	90.323	Canis_familiaris
ENSXMAG00000022179	-	99	90.323	ENSCAFG00020013537	RAB5C	99	90.323	Canis_lupus_dingo
ENSXMAG00000022179	-	99	90.323	ENSCHIG00000012960	RAB5C	99	90.323	Capra_hircus
ENSXMAG00000022179	-	99	90.783	ENSTSYG00000030531	RAB5C	99	90.783	Carlito_syrichta
ENSXMAG00000022179	-	99	90.323	ENSCCAG00000025940	RAB5C	99	90.323	Cebus_capucinus
ENSXMAG00000022179	-	99	90.323	ENSCATG00000040873	RAB5C	99	90.323	Cercocebus_atys
ENSXMAG00000022179	-	99	90.323	ENSCLAG00000016650	RAB5C	99	90.323	Chinchilla_lanigera
ENSXMAG00000022179	-	82	94.972	ENSCHOG00000009886	RAB5C	100	94.972	Choloepus_hoffmanni
ENSXMAG00000022179	-	100	74.439	ENSCING00000003340	-	96	75.829	Ciona_intestinalis
ENSXMAG00000022179	-	99	72.889	ENSCSAVG00000000613	-	99	80.982	Ciona_savignyi
ENSXMAG00000022179	-	99	90.323	ENSCGRG00001014226	Rab5c	99	90.323	Cricetulus_griseus_chok1gshd
ENSXMAG00000022179	-	99	90.323	ENSCGRG00000007534	Rab5c	99	90.323	Cricetulus_griseus_crigri
ENSXMAG00000022179	-	100	89.954	ENSCSEG00000017024	rab5c	99	89.954	Cynoglossus_semilaevis
ENSXMAG00000022179	-	100	90.868	ENSCVAG00000009550	rab5c	99	90.868	Cyprinodon_variegatus
ENSXMAG00000022179	-	99	90.323	ENSDNOG00000038853	RAB5C	99	90.323	Dasypus_novemcinctus
ENSXMAG00000022179	-	99	90.783	ENSDORG00000006819	Rab5c	99	90.783	Dipodomys_ordii
ENSXMAG00000022179	-	96	74.286	FBgn0014010	Rab5	94	74.286	Drosophila_melanogaster
ENSXMAG00000022179	-	97	77.725	ENSEBUG00000014794	rab5c	98	77.725	Eptatretus_burgeri
ENSXMAG00000022179	-	99	90.323	ENSEASG00005009281	RAB5C	99	90.323	Equus_asinus_asinus
ENSXMAG00000022179	-	99	90.783	ENSECAG00000025054	RAB5C	99	90.783	Equus_caballus
ENSXMAG00000022179	-	99	90.323	ENSEEUG00000002790	RAB5C	99	90.323	Erinaceus_europaeus
ENSXMAG00000022179	-	99	89.401	ENSELUG00000018516	rab5c	99	89.401	Esox_lucius
ENSXMAG00000022179	-	100	86.301	ENSELUG00000010439	-	99	86.301	Esox_lucius
ENSXMAG00000022179	-	99	90.323	ENSFCAG00000002148	RAB5C	99	90.323	Felis_catus
ENSXMAG00000022179	-	99	88.940	ENSFDAG00000021541	RAB5C	99	88.940	Fukomys_damarensis
ENSXMAG00000022179	-	100	89.498	ENSFHEG00000012117	rab5c	99	89.498	Fundulus_heteroclitus
ENSXMAG00000022179	-	100	95.434	ENSFHEG00000015268	-	99	95.434	Fundulus_heteroclitus
ENSXMAG00000022179	-	78	88.166	ENSGMOG00000001876	-	98	88.166	Gadus_morhua
ENSXMAG00000022179	-	100	89.498	ENSGMOG00000015096	rab5c	99	89.498	Gadus_morhua
ENSXMAG00000022179	-	100	89.498	ENSGAFG00000000884	rab5c	99	89.498	Gambusia_affinis
ENSXMAG00000022179	-	100	98.655	ENSGAFG00000003642	-	100	98.655	Gambusia_affinis
ENSXMAG00000022179	-	100	85.909	ENSGACG00000008659	rab5c	99	85.909	Gasterosteus_aculeatus
ENSXMAG00000022179	-	99	90.323	ENSGGOG00000005472	RAB5C	99	90.323	Gorilla_gorilla
ENSXMAG00000022179	-	100	88.128	ENSHBUG00000002014	rab5c	99	88.128	Haplochromis_burtoni
ENSXMAG00000022179	-	97	92.130	ENSHBUG00000006823	-	99	93.607	Haplochromis_burtoni
ENSXMAG00000022179	-	99	89.401	ENSHGLG00000012067	RAB5C	99	89.401	Heterocephalus_glaber_female
ENSXMAG00000022179	-	96	84.689	ENSHCOG00000020238	-	99	84.793	Hippocampus_comes
ENSXMAG00000022179	-	100	90.909	ENSHCOG00000004662	rab5c	98	90.909	Hippocampus_comes
ENSXMAG00000022179	-	97	86.792	ENSIPUG00000020082	rab5c	99	88.235	Ictalurus_punctatus
ENSXMAG00000022179	-	99	90.323	ENSSTOG00000006620	RAB5C	99	90.323	Ictidomys_tridecemlineatus
ENSXMAG00000022179	-	99	90.783	ENSJJAG00000021181	Rab5c	99	90.783	Jaculus_jaculus
ENSXMAG00000022179	-	100	94.064	ENSKMAG00000017417	-	99	94.064	Kryptolebias_marmoratus
ENSXMAG00000022179	-	100	89.498	ENSKMAG00000020038	rab5c	99	89.498	Kryptolebias_marmoratus
ENSXMAG00000022179	-	100	90.411	ENSLBEG00000004128	rab5c	99	90.411	Labrus_bergylta
ENSXMAG00000022179	-	100	93.607	ENSLBEG00000010408	-	99	93.607	Labrus_bergylta
ENSXMAG00000022179	-	99	89.352	ENSLOCG00000012566	rab5c	100	89.352	Lepisosteus_oculatus
ENSXMAG00000022179	-	99	90.323	ENSMFAG00000039627	RAB5C	99	90.323	Macaca_fascicularis
ENSXMAG00000022179	-	99	90.323	ENSMNEG00000000355	RAB5C	99	90.323	Macaca_nemestrina
ENSXMAG00000022179	-	100	92.237	ENSMAMG00000016207	-	99	92.237	Mastacembelus_armatus
ENSXMAG00000022179	-	100	89.041	ENSMAMG00000022322	rab5c	99	89.041	Mastacembelus_armatus
ENSXMAG00000022179	-	100	88.128	ENSMZEG00005022735	rab5c	99	88.128	Maylandia_zebra
ENSXMAG00000022179	-	97	92.130	ENSMZEG00005021090	-	99	93.607	Maylandia_zebra
ENSXMAG00000022179	-	99	90.783	ENSMAUG00000015005	Rab5c	99	90.783	Mesocricetus_auratus
ENSXMAG00000022179	-	99	90.783	ENSMICG00000041608	RAB5C	99	90.783	Microcebus_murinus
ENSXMAG00000022179	-	99	90.783	ENSMOCG00000018531	-	99	90.783	Microtus_ochrogaster
ENSXMAG00000022179	-	100	89.091	ENSMMOG00000020621	rab5c	99	89.091	Mola_mola
ENSXMAG00000022179	-	100	91.324	ENSMALG00000022348	-	99	91.324	Monopterus_albus
ENSXMAG00000022179	-	97	83.099	ENSMALG00000006052	rab5c	99	81.614	Monopterus_albus
ENSXMAG00000022179	-	99	91.244	MGP_CAROLIEiJ_G0017184	Rab5c	99	91.244	Mus_caroli
ENSXMAG00000022179	-	99	91.244	ENSMUSG00000019173	Rab5c	99	91.244	Mus_musculus
ENSXMAG00000022179	-	99	91.244	MGP_PahariEiJ_G0018314	Rab5c	99	91.244	Mus_pahari
ENSXMAG00000022179	-	99	91.244	MGP_SPRETEiJ_G0018027	Rab5c	99	91.244	Mus_spretus
ENSXMAG00000022179	-	99	90.323	ENSMPUG00000010554	RAB5C	99	90.323	Mustela_putorius_furo
ENSXMAG00000022179	-	99	90.323	ENSNGAG00000010286	Rab5c	99	90.323	Nannospalax_galili
ENSXMAG00000022179	-	100	89.041	ENSNBRG00000018165	rab5c	99	89.041	Neolamprologus_brichardi
ENSXMAG00000022179	-	97	92.130	ENSNBRG00000016922	-	99	93.607	Neolamprologus_brichardi
ENSXMAG00000022179	-	82	88.827	ENSOPRG00000008255	RAB5C	100	88.827	Ochotona_princeps
ENSXMAG00000022179	-	99	89.862	ENSODEG00000017920	RAB5C	99	89.862	Octodon_degus
ENSXMAG00000022179	-	100	89.498	ENSONIG00000001113	rab5c	99	89.498	Oreochromis_niloticus
ENSXMAG00000022179	-	99	88.940	ENSORLG00000003882	rab5c	99	88.940	Oryzias_latipes
ENSXMAG00000022179	-	99	88.940	ENSORLG00020008388	rab5c	99	88.940	Oryzias_latipes_hni
ENSXMAG00000022179	-	99	88.940	ENSORLG00015021900	rab5c	99	88.940	Oryzias_latipes_hsok
ENSXMAG00000022179	-	99	88.940	ENSOMEG00000023078	rab5c	99	88.940	Oryzias_melastigma
ENSXMAG00000022179	-	99	90.783	ENSOGAG00000009456	RAB5C	99	90.783	Otolemur_garnettii
ENSXMAG00000022179	-	99	90.323	ENSOARG00000018768	RAB5C	99	90.323	Ovis_aries
ENSXMAG00000022179	-	99	90.323	ENSPPAG00000037206	RAB5C	99	90.323	Pan_paniscus
ENSXMAG00000022179	-	99	90.323	ENSPPRG00000005745	RAB5C	99	90.323	Panthera_pardus
ENSXMAG00000022179	-	99	90.323	ENSPTIG00000008177	RAB5C	99	90.323	Panthera_tigris_altaica
ENSXMAG00000022179	-	99	90.323	ENSPTRG00000009194	RAB5C	99	90.323	Pan_troglodytes
ENSXMAG00000022179	-	99	87.097	ENSPKIG00000001237	-	99	87.097	Paramormyrops_kingsleyae
ENSXMAG00000022179	-	99	86.636	ENSPKIG00000020112	-	99	86.636	Paramormyrops_kingsleyae
ENSXMAG00000022179	-	97	89.202	ENSPMGG00000010792	rab5c	98	89.202	Periophthalmus_magnuspinnatus
ENSXMAG00000022179	-	99	90.783	ENSPEMG00000017971	Rab5c	99	90.783	Peromyscus_maniculatus_bairdii
ENSXMAG00000022179	-	99	76.389	ENSPMAG00000007867	rab5c	100	76.389	Petromyzon_marinus
ENSXMAG00000022179	-	99	77.130	ENSPMAG00000000008	rab5c	100	77.130	Petromyzon_marinus
ENSXMAG00000022179	-	99	75.926	ENSPMAG00000001399	rab5c	100	75.926	Petromyzon_marinus
ENSXMAG00000022179	-	99	88.940	ENSPCIG00000020225	-	99	88.940	Phascolarctos_cinereus
ENSXMAG00000022179	-	100	98.624	ENSPLAG00000016333	-	100	98.624	Poecilia_latipinna
ENSXMAG00000022179	-	100	89.498	ENSPLAG00000004790	rab5c	99	89.498	Poecilia_latipinna
ENSXMAG00000022179	-	100	97.758	ENSPMEG00000012614	-	100	97.758	Poecilia_mexicana
ENSXMAG00000022179	-	100	89.498	ENSPMEG00000011336	rab5c	99	89.498	Poecilia_mexicana
ENSXMAG00000022179	-	100	89.498	ENSPREG00000010146	rab5c	99	89.498	Poecilia_reticulata
ENSXMAG00000022179	-	87	96.296	ENSPREG00000022167	-	91	96.791	Poecilia_reticulata
ENSXMAG00000022179	-	99	90.323	ENSPPYG00000008398	RAB5C	99	90.323	Pongo_abelii
ENSXMAG00000022179	-	99	89.401	ENSPCAG00000016412	RAB5C	99	89.401	Procavia_capensis
ENSXMAG00000022179	-	99	90.323	ENSPCOG00000026327	RAB5C	99	90.323	Propithecus_coquereli
ENSXMAG00000022179	-	99	90.783	ENSPVAG00000003867	RAB5C	99	90.783	Pteropus_vampyrus
ENSXMAG00000022179	-	97	92.130	ENSPNYG00000015851	-	99	93.607	Pundamilia_nyererei
ENSXMAG00000022179	-	100	88.128	ENSPNYG00000010615	rab5c	99	88.128	Pundamilia_nyererei
ENSXMAG00000022179	-	95	89.524	ENSPNAG00000002218	-	99	89.524	Pygocentrus_nattereri
ENSXMAG00000022179	-	100	90.000	ENSPNAG00000028138	rab5c	99	90.000	Pygocentrus_nattereri
ENSXMAG00000022179	-	99	90.783	ENSRNOG00000018568	Rab5c	99	90.783	Rattus_norvegicus
ENSXMAG00000022179	-	99	90.323	ENSRBIG00000031376	RAB5C	99	90.323	Rhinopithecus_bieti
ENSXMAG00000022179	-	99	90.323	ENSRROG00000032895	RAB5C	99	90.323	Rhinopithecus_roxellana
ENSXMAG00000022179	-	99	90.323	ENSSBOG00000032552	-	99	90.323	Saimiri_boliviensis_boliviensis
ENSXMAG00000022179	-	99	89.401	ENSSHAG00000005267	-	99	89.401	Sarcophilus_harrisii
ENSXMAG00000022179	-	100	85.000	ENSSFOG00015009988	-	99	85.000	Scleropages_formosus
ENSXMAG00000022179	-	96	90.909	ENSSMAG00000007323	rab5c	99	88.182	Scophthalmus_maximus
ENSXMAG00000022179	-	100	89.498	ENSSDUG00000023008	rab5c	99	89.498	Seriola_dumerili
ENSXMAG00000022179	-	100	88.584	ENSSLDG00000017771	rab5c	99	88.584	Seriola_lalandi_dorsalis
ENSXMAG00000022179	-	99	89.401	ENSSPUG00000012950	-	99	89.401	Sphenodon_punctatus
ENSXMAG00000022179	-	100	89.954	ENSSPAG00000006436	rab5c	99	89.954	Stegastes_partitus
ENSXMAG00000022179	-	99	90.323	ENSSSCG00000032467	RAB5C	99	90.323	Sus_scrofa
ENSXMAG00000022179	-	100	88.584	ENSTRUG00000015590	rab5c	99	88.584	Takifugu_rubripes
ENSXMAG00000022179	-	99	87.558	ENSTNIG00000011711	rab5c	98	87.558	Tetraodon_nigroviridis
ENSXMAG00000022179	-	99	90.323	ENSTBEG00000007092	RAB5C	99	90.323	Tupaia_belangeri
ENSXMAG00000022179	-	99	89.862	ENSTTRG00000006673	RAB5C	99	89.862	Tursiops_truncatus
ENSXMAG00000022179	-	99	90.323	ENSUAMG00000024343	RAB5C	99	90.323	Ursus_americanus
ENSXMAG00000022179	-	99	90.323	ENSUMAG00000023270	RAB5C	99	90.323	Ursus_maritimus
ENSXMAG00000022179	-	100	89.954	ENSXCOG00000016788	rab5c	99	89.954	Xiphophorus_couchianus
ENSXMAG00000022179	-	100	100.000	ENSXCOG00000006300	-	100	100.000	Xiphophorus_couchianus
ENSXMAG00000022179	-	100	89.498	ENSXMAG00000003266	rab5c	99	89.498	Xiphophorus_maculatus