EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000023123 (Gene tree)
Gene ID: 102218506
Gene Symbol: -
Alias: -
Full Name: ribosomal RNA processing protein 1 homolog A-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 26741 bases
Position: chr7:801454-828194
Accession: 102218506
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000028248	Nop52	PF05997.12	3.9e-63	1	1
ENSXMAP00000039156	Nop52	PF05997.12	4.6e-63	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000038200	-	3388	XM_023336907	ENSXMAP00000028248	797 (aa)	XP_023192675	UPI000C6D9067
ENSXMAT00000023457	-	3547	XM_023336905	ENSXMAP00000039156	850 (aa)	XP_023192673	UPI000C6DA0B4

Gene Model

Click here to download ENSXMAG00000023123's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000023123's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000023123	-	72	46.667	ENSG00000160208	RRP1B	81	46.667	Homo_sapiens
ENSXMAG00000023123	-	76	68.367	ENSAPOG00000007490	-	65	63.869	Acanthochromis_polyacanthus
ENSXMAG00000023123	-	55	43.172	ENSAMEG00000011448	RRP1	78	47.283	Ailuropoda_melanoleuca
ENSXMAG00000023123	-	58	51.485	ENSAMEG00000011401	RRP1B	61	55.446	Ailuropoda_melanoleuca
ENSXMAG00000023123	-	68	83.784	ENSAOCG00000017894	-	100	67.939	Amphiprion_ocellaris
ENSXMAG00000023123	-	77	63.551	ENSAPEG00000024150	-	64	65.060	Amphiprion_percula
ENSXMAG00000023123	-	68	66.158	ENSATEG00000005045	-	59	63.380	Anabas_testudineus
ENSXMAG00000023123	-	54	52.525	ENSAPLG00000004310	RRP1B	63	51.923	Anas_platyrhynchos
ENSXMAG00000023123	-	60	50.820	ENSACAG00000017851	RRP1B	61	50.000	Anolis_carolinensis
ENSXMAG00000023123	-	72	46.133	ENSANAG00000034889	RRP1B	81	46.133	Aotus_nancymaae
ENSXMAG00000023123	-	52	49.367	ENSAMXG00000043138	-	72	43.675	Astyanax_mexicanus
ENSXMAG00000023123	-	55	42.667	ENSBTAG00000003981	RRP1	82	46.891	Bos_taurus
ENSXMAG00000023123	-	63	53.061	ENSBTAG00000017418	RRP1B	63	53.061	Bos_taurus
ENSXMAG00000023123	-	72	45.867	ENSCJAG00000017077	RRP1B	81	45.867	Callithrix_jacchus
ENSXMAG00000023123	-	59	43.114	ENSCAFG00000010621	RRP1B	64	41.935	Canis_familiaris
ENSXMAG00000023123	-	55	42.094	ENSCAFG00000010646	RRP1	84	46.173	Canis_familiaris
ENSXMAG00000023123	-	55	42.094	ENSCAFG00020018979	RRP1	84	46.173	Canis_lupus_dingo
ENSXMAG00000023123	-	59	50.526	ENSCAFG00020018901	RRP1B	61	52.632	Canis_lupus_dingo
ENSXMAG00000023123	-	58	45.865	ENSCHIG00000021519	RRP1B	70	45.865	Capra_hircus
ENSXMAG00000023123	-	58	48.980	ENSCPOG00000002396	RRP1B	67	41.855	Cavia_porcellus
ENSXMAG00000023123	-	100	35.854	ENSCCAG00000029384	RRP1B	67	44.776	Cebus_capucinus
ENSXMAG00000023123	-	100	35.539	ENSCATG00000017423	RRP1B	69	44.417	Cercocebus_atys
ENSXMAG00000023123	-	100	35.907	ENSCSAG00000007961	RRP1B	69	45.578	Chlorocebus_sabaeus
ENSXMAG00000023123	-	63	51.771	ENSCPBG00000010310	RRP1B	63	51.075	Chrysemys_picta_bellii
ENSXMAG00000023123	-	100	35.610	ENSCANG00000040952	RRP1B	65	46.667	Colobus_angolensis_palliatus
ENSXMAG00000023123	-	99	34.105	ENSCGRG00001010889	-	64	45.522	Cricetulus_griseus_chok1gshd
ENSXMAG00000023123	-	99	33.739	ENSCGRG00001023882	-	59	61.194	Cricetulus_griseus_chok1gshd
ENSXMAG00000023123	-	96	32.953	ENSCGRG00000001553	Rrp1b	61	45.522	Cricetulus_griseus_crigri
ENSXMAG00000023123	-	61	63.539	ENSCSEG00000020711	-	90	58.629	Cynoglossus_semilaevis
ENSXMAG00000023123	-	50	68.514	ENSCVAG00000017568	-	97	68.514	Cyprinodon_variegatus
ENSXMAG00000023123	-	61	52.646	ENSDARG00000103337	rrp1	66	51.872	Danio_rerio
ENSXMAG00000023123	-	62	45.902	ENSDNOG00000032774	RRP1B	65	44.562	Dasypus_novemcinctus
ENSXMAG00000023123	-	59	51.020	ENSETEG00000019489	RRP1B	60	51.020	Echinops_telfairi
ENSXMAG00000023123	-	59	51.020	ENSEASG00005001687	RRP1B	65	46.524	Equus_asinus_asinus
ENSXMAG00000023123	-	59	51.020	ENSECAG00000018018	RRP1B	65	46.257	Equus_caballus
ENSXMAG00000023123	-	63	60.779	ENSELUG00000015885	-	85	61.399	Esox_lucius
ENSXMAG00000023123	-	59	51.020	ENSFCAG00000010272	RRP1B	61	51.020	Felis_catus
ENSXMAG00000023123	-	51	44.595	ENSFALG00000002024	RRP1B	61	44.728	Ficedula_albicollis
ENSXMAG00000023123	-	61	45.299	ENSFDAG00000010899	RRP1B	63	50.000	Fukomys_damarensis
ENSXMAG00000023123	-	94	63.685	ENSFHEG00000016314	-	82	70.299	Fundulus_heteroclitus
ENSXMAG00000023123	-	67	58.713	ENSGMOG00000001953	-	73	57.812	Gadus_morhua
ENSXMAG00000023123	-	60	48.656	ENSGALG00000035696	RRP1B	79	47.849	Gallus_gallus
ENSXMAG00000023123	-	75	57.522	ENSGACG00000001438	rrp1	80	62.899	Gasterosteus_aculeatus
ENSXMAG00000023123	-	63	51.762	ENSGAGG00000000375	RRP1B	66	51.075	Gopherus_agassizii
ENSXMAG00000023123	-	100	36.397	ENSGGOG00000012069	RRP1B	81	46.667	Gorilla_gorilla
ENSXMAG00000023123	-	58	48.958	ENSHGLG00000004968	RRP1B	59	48.958	Heterocephalus_glaber_female
ENSXMAG00000023123	-	50	48.958	ENSHGLG00100002232	RRP1B	51	48.958	Heterocephalus_glaber_male
ENSXMAG00000023123	-	100	43.162	ENSHCOG00000018388	-	76	55.819	Hippocampus_comes
ENSXMAG00000023123	-	52	72.727	ENSIPUG00000000673	-	75	51.605	Ictalurus_punctatus
ENSXMAG00000023123	-	57	53.125	ENSSTOG00000011790	RRP1B	59	52.083	Ictidomys_tridecemlineatus
ENSXMAG00000023123	-	52	42.212	ENSSTOG00000011116	RRP1	76	48.295	Ictidomys_tridecemlineatus
ENSXMAG00000023123	-	71	41.056	ENSJJAG00000021279	Rrp1b	79	41.040	Jaculus_jaculus
ENSXMAG00000023123	-	71	67.536	ENSKMAG00000005539	rrp1	99	67.062	Kryptolebias_marmoratus
ENSXMAG00000023123	-	58	51.020	ENSLACG00000017332	-	65	47.826	Latimeria_chalumnae
ENSXMAG00000023123	-	99	40.750	ENSLOCG00000004064	-	72	56.183	Lepisosteus_oculatus
ENSXMAG00000023123	-	54	42.563	ENSLAFG00000000766	RRP1B	85	44.737	Loxodonta_africana
ENSXMAG00000023123	-	100	35.784	ENSMFAG00000039152	RRP1B	69	44.665	Macaca_fascicularis
ENSXMAG00000023123	-	100	36.186	ENSMMUG00000000104	RRP1B	62	46.667	Macaca_mulatta
ENSXMAG00000023123	-	100	35.539	ENSMNEG00000034269	RRP1B	69	44.665	Macaca_nemestrina
ENSXMAG00000023123	-	95	34.670	ENSMLEG00000040044	RRP1B	66	44.218	Mandrillus_leucophaeus
ENSXMAG00000023123	-	71	64.339	ENSMAMG00000007131	-	56	67.082	Mastacembelus_armatus
ENSXMAG00000023123	-	57	52.525	ENSMGAG00000014591	RRP1B	82	47.315	Meleagris_gallopavo
ENSXMAG00000023123	-	54	54.082	ENSMAUG00000021508	Rrp1b	61	45.588	Mesocricetus_auratus
ENSXMAG00000023123	-	59	54.082	ENSMICG00000004686	RRP1B	61	54.082	Microcebus_murinus
ENSXMAG00000023123	-	68	45.865	ENSMOCG00000001117	Rrp1b	77	45.865	Microtus_ochrogaster
ENSXMAG00000023123	-	54	52.083	ENSMODG00000021033	RRP1B	80	47.884	Monodelphis_domestica
ENSXMAG00000023123	-	62	43.860	MGP_CAROLIEiJ_G0021376	Rrp1b	75	43.860	Mus_caroli
ENSXMAG00000023123	-	60	44.318	ENSMUSG00000058392	Rrp1b	75	44.318	Mus_musculus
ENSXMAG00000023123	-	71	42.033	MGP_PahariEiJ_G0023695	Rrp1b	81	41.509	Mus_pahari
ENSXMAG00000023123	-	69	43.017	MGP_SPRETEiJ_G0022290	Rrp1b	84	40.876	Mus_spretus
ENSXMAG00000023123	-	58	52.632	ENSMLUG00000007738	RRP1B	59	52.632	Myotis_lucifugus
ENSXMAG00000023123	-	59	45.752	ENSNGAG00000021073	Rrp1b	64	45.752	Nannospalax_galili
ENSXMAG00000023123	-	59	53.061	ENSNLEG00000001490	RRP1B	75	46.400	Nomascus_leucogenys
ENSXMAG00000023123	-	58	46.154	ENSODEG00000013177	RRP1B	69	42.775	Octodon_degus
ENSXMAG00000023123	-	57	62.022	ENSONIG00000004264	rrp1	80	62.022	Oreochromis_niloticus
ENSXMAG00000023123	-	66	43.443	ENSOANG00000006470	RRP1B	71	43.200	Ornithorhynchus_anatinus
ENSXMAG00000023123	-	64	42.345	ENSOCUG00000025931	RRP1B	78	42.020	Oryctolagus_cuniculus
ENSXMAG00000023123	-	69	63.614	ENSORLG00020007199	-	66	63.221	Oryzias_latipes_hni
ENSXMAG00000023123	-	69	62.892	ENSORLG00015004425	-	65	62.981	Oryzias_latipes_hsok
ENSXMAG00000023123	-	62	63.614	ENSOMEG00000016910	-	68	63.119	Oryzias_melastigma
ENSXMAG00000023123	-	53	68.333	ENSOGAG00000009872	RRP1B	67	68.333	Otolemur_garnettii
ENSXMAG00000023123	-	50	45.946	ENSOARG00000011314	RRP1B	61	45.946	Ovis_aries
ENSXMAG00000023123	-	67	45.783	ENSPPAG00000035319	RRP1B	79	45.619	Pan_paniscus
ENSXMAG00000023123	-	59	51.020	ENSPPRG00000010356	RRP1B	61	51.020	Panthera_pardus
ENSXMAG00000023123	-	54	51.020	ENSPTIG00000016894	RRP1B	68	51.020	Panthera_tigris_altaica
ENSXMAG00000023123	-	72	46.667	ENSPTRG00000013958	RRP1B	81	46.667	Pan_troglodytes
ENSXMAG00000023123	-	100	35.775	ENSPANG00000011090	RRP1B	69	44.665	Papio_anubis
ENSXMAG00000023123	-	64	53.243	ENSPSIG00000008152	RRP1B	67	52.151	Pelodiscus_sinensis
ENSXMAG00000023123	-	58	44.030	ENSPEMG00000022490	Rrp1b	64	44.030	Peromyscus_maniculatus_bairdii
ENSXMAG00000023123	-	100	36.218	ENSPCIG00000015513	RRP1B	88	45.758	Phascolarctos_cinereus
ENSXMAG00000023123	-	100	75.874	ENSPFOG00000007424	-	99	76.807	Poecilia_formosa
ENSXMAG00000023123	-	87	84.451	ENSPLAG00000016684	-	99	85.164	Poecilia_latipinna
ENSXMAG00000023123	-	100	84.561	ENSPMEG00000007042	-	100	85.614	Poecilia_mexicana
ENSXMAG00000023123	-	100	85.397	ENSPREG00000015673	-	100	85.514	Poecilia_reticulata
ENSXMAG00000023123	-	72	46.667	ENSPPYG00000011470	RRP1B	81	46.667	Pongo_abelii
ENSXMAG00000023123	-	59	55.102	ENSPCOG00000017927	RRP1B	61	55.102	Propithecus_coquereli
ENSXMAG00000023123	-	62	51.613	ENSPVAG00000001436	RRP1B	62	51.613	Pteropus_vampyrus
ENSXMAG00000023123	-	63	42.737	ENSRNOG00000001194	Rrp1b	71	42.318	Rattus_norvegicus
ENSXMAG00000023123	-	55	42.672	ENSRBIG00000032082	RRP1	96	43.077	Rhinopithecus_bieti
ENSXMAG00000023123	-	100	34.024	ENSRBIG00000041689	RRP1B	68	44.521	Rhinopithecus_bieti
ENSXMAG00000023123	-	100	35.662	ENSRROG00000031499	RRP1B	69	44.665	Rhinopithecus_roxellana
ENSXMAG00000023123	-	63	42.216	ENSSBOG00000034727	RRP1B	74	42.216	Saimiri_boliviensis_boliviensis
ENSXMAG00000023123	-	100	35.971	ENSSHAG00000017789	RRP1B	100	36.408	Sarcophilus_harrisii
ENSXMAG00000023123	-	59	53.276	ENSSFOG00015003932	-	58	50.131	Scleropages_formosus
ENSXMAG00000023123	-	80	62.500	ENSSMAG00000016847	-	92	65.570	Scophthalmus_maximus
ENSXMAG00000023123	-	73	66.341	ENSSDUG00000000551	-	65	66.262	Seriola_dumerili
ENSXMAG00000023123	-	61	70.408	ENSSLDG00000002538	-	66	66.262	Seriola_lalandi_dorsalis
ENSXMAG00000023123	-	52	39.796	ENSSARG00000003108	-	53	52.688	Sorex_araneus
ENSXMAG00000023123	-	65	68.205	ENSSPAG00000005370	-	65	65.012	Stegastes_partitus
ENSXMAG00000023123	-	71	43.622	ENSSSCG00000021698	RRP1B	68	51.020	Sus_scrofa
ENSXMAG00000023123	-	54	47.222	ENSTGUG00000005926	RRP1B	71	46.526	Taeniopygia_guttata
ENSXMAG00000023123	-	61	80.392	ENSTNIG00000005053	rrp1	76	80.392	Tetraodon_nigroviridis
ENSXMAG00000023123	-	56	44.602	ENSTBEG00000000422	RRP1B	80	44.602	Tupaia_belangeri
ENSXMAG00000023123	-	62	46.875	ENSTTRG00000000723	RRP1B	70	41.707	Tursiops_truncatus
ENSXMAG00000023123	-	59	52.041	ENSUAMG00000026765	RRP1B	73	44.385	Ursus_americanus
ENSXMAG00000023123	-	51	41.805	ENSUMAG00000025507	RRP1	94	41.093	Ursus_maritimus
ENSXMAG00000023123	-	54	51.020	ENSUMAG00000025510	RRP1B	92	42.900	Ursus_maritimus
ENSXMAG00000023123	-	59	42.216	ENSVVUG00000024509	RRP1B	68	41.867	Vulpes_vulpes
ENSXMAG00000023123	-	55	51.471	ENSXETG00000013683	rrp1b	84	51.471	Xenopus_tropicalis