EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000023382 (Gene tree)
Gene ID: 102228121
Gene Symbol: exosc1
Alias: -
Full Name: exosome component 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 5682 bases
Position: chr5:22068184-22073865
Accession: 102228121
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000031224	EXOSC1	PF10447.9	2.4e-12	1	1
ENSXMAP00000031224	ECR1_N	PF14382.6	3.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000029561	-	540	XM_005805069	ENSXMAP00000031224	179 (aa)	XP_005805126	-

Gene Model

Click here to download ENSXMAG00000023382's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000023382's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000023382	exosc1	93	75.301	ENSG00000171311	EXOSC1	98	75.301	Homo_sapiens
ENSXMAG00000023382	exosc1	94	77.320	ENSAPOG00000007822	exosc1	100	77.320	Acanthochromis_polyacanthus
ENSXMAG00000023382	exosc1	93	66.667	ENSAMEG00000000129	EXOSC1	98	66.667	Ailuropoda_melanoleuca
ENSXMAG00000023382	exosc1	89	76.216	ENSACIG00000018956	exosc1	91	76.216	Amphilophus_citrinellus
ENSXMAG00000023382	exosc1	94	76.804	ENSAOCG00000010699	exosc1	100	76.804	Amphiprion_ocellaris
ENSXMAG00000023382	exosc1	87	66.111	ENSAPEG00000012690	exosc1	97	66.111	Amphiprion_percula
ENSXMAG00000023382	exosc1	94	76.804	ENSATEG00000018683	exosc1	100	76.804	Anabas_testudineus
ENSXMAG00000023382	exosc1	94	62.694	ENSACAG00000002101	EXOSC1	99	62.694	Anolis_carolinensis
ENSXMAG00000023382	exosc1	93	75.904	ENSANAG00000034669	EXOSC1	98	75.904	Aotus_nancymaae
ENSXMAG00000023382	exosc1	94	76.804	ENSACLG00000021243	exosc1	100	76.804	Astatotilapia_calliptera
ENSXMAG00000023382	exosc1	94	73.711	ENSAMXG00000011116	exosc1	100	73.711	Astyanax_mexicanus
ENSXMAG00000023382	exosc1	93	66.667	ENSBTAG00000012699	EXOSC1	98	66.667	Bos_taurus
ENSXMAG00000023382	exosc1	93	75.301	ENSCJAG00000016586	EXOSC1	98	75.301	Callithrix_jacchus
ENSXMAG00000023382	exosc1	93	66.667	ENSCAFG00000009068	EXOSC1	93	66.667	Canis_familiaris
ENSXMAG00000023382	exosc1	93	66.667	ENSCAFG00020006002	EXOSC1	93	66.667	Canis_lupus_dingo
ENSXMAG00000023382	exosc1	93	66.667	ENSCHIG00000015253	EXOSC1	98	66.667	Capra_hircus
ENSXMAG00000023382	exosc1	93	75.301	ENSTSYG00000000760	EXOSC1	98	75.301	Carlito_syrichta
ENSXMAG00000023382	exosc1	93	66.667	ENSCPOG00000001173	EXOSC1	98	66.667	Cavia_porcellus
ENSXMAG00000023382	exosc1	93	42.771	ENSCCAG00000023986	EXOSC1	97	42.771	Cebus_capucinus
ENSXMAG00000023382	exosc1	93	75.301	ENSCATG00000034114	EXOSC1	98	75.301	Cercocebus_atys
ENSXMAG00000023382	exosc1	93	66.667	ENSCLAG00000002463	EXOSC1	98	66.667	Chinchilla_lanigera
ENSXMAG00000023382	exosc1	93	64.583	ENSCSAG00000005870	EXOSC1	98	64.583	Chlorocebus_sabaeus
ENSXMAG00000023382	exosc1	89	64.674	ENSCHOG00000006477	EXOSC1	98	64.674	Choloepus_hoffmanni
ENSXMAG00000023382	exosc1	91	45.745	ENSCING00000022734	-	90	45.745	Ciona_intestinalis
ENSXMAG00000023382	exosc1	93	48.705	ENSCSAVG00000010865	-	98	48.705	Ciona_savignyi
ENSXMAG00000023382	exosc1	93	75.301	ENSCANG00000034159	EXOSC1	98	75.301	Colobus_angolensis_palliatus
ENSXMAG00000023382	exosc1	93	66.492	ENSCGRG00001000335	Exosc1	98	66.492	Cricetulus_griseus_chok1gshd
ENSXMAG00000023382	exosc1	93	66.492	ENSCGRG00000011602	Exosc1	98	66.492	Cricetulus_griseus_crigri
ENSXMAG00000023382	exosc1	97	85.549	ENSCSEG00000007895	exosc1	99	85.549	Cynoglossus_semilaevis
ENSXMAG00000023382	exosc1	94	84.021	ENSCVAG00000016748	exosc1	100	84.021	Cyprinodon_variegatus
ENSXMAG00000023382	exosc1	94	73.711	ENSDARG00000059841	exosc1	100	73.711	Danio_rerio
ENSXMAG00000023382	exosc1	66	62.069	ENSDNOG00000007983	EXOSC1	98	62.069	Dasypus_novemcinctus
ENSXMAG00000023382	exosc1	93	66.146	ENSDORG00000016528	Exosc1	98	66.146	Dipodomys_ordii
ENSXMAG00000023382	exosc1	94	43.216	FBgn0032346	Csl4	97	43.216	Drosophila_melanogaster
ENSXMAG00000023382	exosc1	93	66.667	ENSETEG00000002469	-	98	66.667	Echinops_telfairi
ENSXMAG00000023382	exosc1	92	55.729	ENSEBUG00000008164	exosc1	96	55.729	Eptatretus_burgeri
ENSXMAG00000023382	exosc1	93	69.022	ENSEASG00005008684	EXOSC1	98	69.022	Equus_asinus_asinus
ENSXMAG00000023382	exosc1	51	55.963	ENSECAG00000010621	EXOSC1	69	55.963	Equus_caballus
ENSXMAG00000023382	exosc1	93	65.104	ENSEEUG00000005647	EXOSC1	98	65.104	Erinaceus_europaeus
ENSXMAG00000023382	exosc1	95	80.814	ENSELUG00000017369	exosc1	100	80.814	Esox_lucius
ENSXMAG00000023382	exosc1	93	74.850	ENSFCAG00000040563	EXOSC1	98	74.850	Felis_catus
ENSXMAG00000023382	exosc1	93	64.921	ENSFALG00000008450	EXOSC1	98	64.921	Ficedula_albicollis
ENSXMAG00000023382	exosc1	93	67.188	ENSFDAG00000000846	EXOSC1	98	67.188	Fukomys_damarensis
ENSXMAG00000023382	exosc1	94	83.505	ENSFHEG00000009154	exosc1	100	83.505	Fundulus_heteroclitus
ENSXMAG00000023382	exosc1	94	74.227	ENSGMOG00000008993	exosc1	100	74.227	Gadus_morhua
ENSXMAG00000023382	exosc1	93	72.892	ENSGALG00000039917	EXOSC1	98	72.892	Gallus_gallus
ENSXMAG00000023382	exosc1	100	98.324	ENSGAFG00000010265	exosc1	100	98.324	Gambusia_affinis
ENSXMAG00000023382	exosc1	94	74.227	ENSGACG00000018936	exosc1	100	74.227	Gasterosteus_aculeatus
ENSXMAG00000023382	exosc1	93	62.827	ENSGAGG00000019192	EXOSC1	98	62.827	Gopherus_agassizii
ENSXMAG00000023382	exosc1	93	74.251	ENSGGOG00000003099	EXOSC1	98	74.251	Gorilla_gorilla
ENSXMAG00000023382	exosc1	94	76.804	ENSHBUG00000017857	exosc1	100	76.804	Haplochromis_burtoni
ENSXMAG00000023382	exosc1	93	66.667	ENSHGLG00000016927	EXOSC1	98	66.667	Heterocephalus_glaber_female
ENSXMAG00000023382	exosc1	93	66.667	ENSHGLG00100012208	EXOSC1	98	66.667	Heterocephalus_glaber_male
ENSXMAG00000023382	exosc1	94	75.258	ENSHCOG00000019882	exosc1	100	75.258	Hippocampus_comes
ENSXMAG00000023382	exosc1	94	72.680	ENSIPUG00000007685	exosc1	100	72.680	Ictalurus_punctatus
ENSXMAG00000023382	exosc1	93	66.667	ENSSTOG00000006615	EXOSC1	98	66.667	Ictidomys_tridecemlineatus
ENSXMAG00000023382	exosc1	53	52.727	ENSSTOG00000029860	-	91	52.727	Ictidomys_tridecemlineatus
ENSXMAG00000023382	exosc1	93	66.667	ENSJJAG00000013311	Exosc1	98	66.667	Jaculus_jaculus
ENSXMAG00000023382	exosc1	98	85.311	ENSKMAG00000001202	exosc1	85	85.311	Kryptolebias_marmoratus
ENSXMAG00000023382	exosc1	94	76.804	ENSLBEG00000011448	exosc1	100	76.804	Labrus_bergylta
ENSXMAG00000023382	exosc1	94	62.500	ENSLOCG00000003776	exosc1	100	62.500	Lepisosteus_oculatus
ENSXMAG00000023382	exosc1	93	65.625	ENSLAFG00000015983	EXOSC1	98	65.625	Loxodonta_africana
ENSXMAG00000023382	exosc1	93	75.301	ENSMFAG00000001493	EXOSC1	98	75.301	Macaca_fascicularis
ENSXMAG00000023382	exosc1	93	75.301	ENSMMUG00000020028	EXOSC1	98	75.301	Macaca_mulatta
ENSXMAG00000023382	exosc1	93	75.301	ENSMNEG00000029816	EXOSC1	98	75.301	Macaca_nemestrina
ENSXMAG00000023382	exosc1	93	60.417	ENSMLEG00000027643	EXOSC1	98	60.417	Mandrillus_leucophaeus
ENSXMAG00000023382	exosc1	94	77.835	ENSMAMG00000012200	exosc1	100	77.835	Mastacembelus_armatus
ENSXMAG00000023382	exosc1	94	76.804	ENSMZEG00005007042	exosc1	100	76.804	Maylandia_zebra
ENSXMAG00000023382	exosc1	93	74.699	ENSMAUG00000020462	-	98	74.699	Mesocricetus_auratus
ENSXMAG00000023382	exosc1	93	74.850	ENSMICG00000007664	EXOSC1	98	74.850	Microcebus_murinus
ENSXMAG00000023382	exosc1	92	61.579	ENSMOCG00000017124	-	97	61.579	Microtus_ochrogaster
ENSXMAG00000023382	exosc1	93	66.492	ENSMOCG00000006004	-	98	66.492	Microtus_ochrogaster
ENSXMAG00000023382	exosc1	94	67.059	ENSMMOG00000021403	exosc1	100	67.059	Mola_mola
ENSXMAG00000023382	exosc1	93	65.803	ENSMODG00000004213	EXOSC1	98	65.803	Monodelphis_domestica
ENSXMAG00000023382	exosc1	89	77.297	ENSMALG00000007061	exosc1	93	77.297	Monopterus_albus
ENSXMAG00000023382	exosc1	93	66.492	MGP_CAROLIEiJ_G0022959	Exosc1	98	66.492	Mus_caroli
ENSXMAG00000023382	exosc1	93	65.445	ENSMUSG00000034321	Exosc1	98	65.445	Mus_musculus
ENSXMAG00000023382	exosc1	93	66.492	MGP_PahariEiJ_G0014449	Exosc1	98	66.492	Mus_pahari
ENSXMAG00000023382	exosc1	93	66.492	MGP_SPRETEiJ_G0023880	Exosc1	98	66.492	Mus_spretus
ENSXMAG00000023382	exosc1	93	66.667	ENSMPUG00000017044	EXOSC1	98	66.667	Mustela_putorius_furo
ENSXMAG00000023382	exosc1	93	66.667	ENSMLUG00000009228	EXOSC1	98	66.667	Myotis_lucifugus
ENSXMAG00000023382	exosc1	93	65.104	ENSNGAG00000022033	Exosc1	98	65.104	Nannospalax_galili
ENSXMAG00000023382	exosc1	95	69.006	ENSNBRG00000024007	exosc1	100	69.006	Neolamprologus_brichardi
ENSXMAG00000023382	exosc1	93	74.699	ENSNLEG00000013872	EXOSC1	98	74.699	Nomascus_leucogenys
ENSXMAG00000023382	exosc1	93	65.625	ENSOPRG00000005065	EXOSC1	98	65.625	Ochotona_princeps
ENSXMAG00000023382	exosc1	93	67.188	ENSODEG00000016709	EXOSC1	98	67.188	Octodon_degus
ENSXMAG00000023382	exosc1	94	76.289	ENSONIG00000017683	exosc1	99	76.289	Oreochromis_niloticus
ENSXMAG00000023382	exosc1	64	85.965	ENSOANG00000006563	EXOSC1	99	81.600	Ornithorhynchus_anatinus
ENSXMAG00000023382	exosc1	93	66.321	ENSOCUG00000011898	-	98	66.321	Oryctolagus_cuniculus
ENSXMAG00000023382	exosc1	93	61.979	ENSOCUG00000026461	-	98	61.979	Oryctolagus_cuniculus
ENSXMAG00000023382	exosc1	94	74.872	ENSORLG00000011595	exosc1	100	74.872	Oryzias_latipes
ENSXMAG00000023382	exosc1	94	74.872	ENSORLG00020005831	exosc1	100	74.872	Oryzias_latipes_hni
ENSXMAG00000023382	exosc1	94	74.872	ENSORLG00015004317	exosc1	100	74.872	Oryzias_latipes_hsok
ENSXMAG00000023382	exosc1	95	67.568	ENSOMEG00000013907	exosc1	100	67.568	Oryzias_melastigma
ENSXMAG00000023382	exosc1	93	66.146	ENSOGAG00000016259	EXOSC1	98	66.146	Otolemur_garnettii
ENSXMAG00000023382	exosc1	93	66.146	ENSOARG00000010136	EXOSC1	98	66.146	Ovis_aries
ENSXMAG00000023382	exosc1	93	60.309	ENSPPAG00000039842	EXOSC1	98	60.309	Pan_paniscus
ENSXMAG00000023382	exosc1	93	74.850	ENSPPRG00000023366	EXOSC1	98	74.850	Panthera_pardus
ENSXMAG00000023382	exosc1	93	74.850	ENSPTIG00000017701	EXOSC1	98	74.850	Panthera_tigris_altaica
ENSXMAG00000023382	exosc1	93	75.301	ENSPTRG00000002808	EXOSC1	98	75.301	Pan_troglodytes
ENSXMAG00000023382	exosc1	93	75.301	ENSPANG00000021324	EXOSC1	98	75.301	Papio_anubis
ENSXMAG00000023382	exosc1	94	74.742	ENSPKIG00000016037	exosc1	100	74.742	Paramormyrops_kingsleyae
ENSXMAG00000023382	exosc1	68	75.207	ENSPSIG00000013571	EXOSC1	98	74.380	Pelodiscus_sinensis
ENSXMAG00000023382	exosc1	94	88.757	ENSPMGG00000014002	exosc1	100	88.757	Periophthalmus_magnuspinnatus
ENSXMAG00000023382	exosc1	93	66.492	ENSPEMG00000010710	-	98	66.492	Peromyscus_maniculatus_bairdii
ENSXMAG00000023382	exosc1	90	60.428	ENSPMAG00000000195	exosc1	95	60.428	Petromyzon_marinus
ENSXMAG00000023382	exosc1	93	65.104	ENSPCIG00000002210	EXOSC1	97	65.104	Phascolarctos_cinereus
ENSXMAG00000023382	exosc1	100	86.275	ENSPFOG00000006755	exosc1	100	86.275	Poecilia_formosa
ENSXMAG00000023382	exosc1	88	99.367	ENSPLAG00000005880	exosc1	98	99.367	Poecilia_latipinna
ENSXMAG00000023382	exosc1	100	98.324	ENSPMEG00000015598	exosc1	100	98.324	Poecilia_mexicana
ENSXMAG00000023382	exosc1	100	98.324	ENSPREG00000000405	exosc1	100	98.324	Poecilia_reticulata
ENSXMAG00000023382	exosc1	93	65.104	ENSPPYG00000002531	EXOSC1	98	65.104	Pongo_abelii
ENSXMAG00000023382	exosc1	93	66.667	ENSPCAG00000009135	EXOSC1	98	66.667	Procavia_capensis
ENSXMAG00000023382	exosc1	93	68.862	ENSPCOG00000027539	EXOSC1	98	68.862	Propithecus_coquereli
ENSXMAG00000023382	exosc1	93	66.667	ENSPVAG00000003372	EXOSC1	98	66.667	Pteropus_vampyrus
ENSXMAG00000023382	exosc1	94	88.166	ENSPNYG00000021745	exosc1	99	88.166	Pundamilia_nyererei
ENSXMAG00000023382	exosc1	95	81.765	ENSPNAG00000001944	exosc1	100	81.765	Pygocentrus_nattereri
ENSXMAG00000023382	exosc1	93	66.492	ENSRNOG00000048708	Exosc1	98	66.492	Rattus_norvegicus
ENSXMAG00000023382	exosc1	93	75.301	ENSRBIG00000035618	EXOSC1	98	75.301	Rhinopithecus_bieti
ENSXMAG00000023382	exosc1	93	75.301	ENSRROG00000032589	EXOSC1	98	75.301	Rhinopithecus_roxellana
ENSXMAG00000023382	exosc1	93	75.904	ENSSBOG00000000359	EXOSC1	98	75.904	Saimiri_boliviensis_boliviensis
ENSXMAG00000023382	exosc1	68	83.740	ENSSHAG00000018219	EXOSC1	84	83.740	Sarcophilus_harrisii
ENSXMAG00000023382	exosc1	94	73.196	ENSSFOG00015009069	exosc1	100	73.196	Scleropages_formosus
ENSXMAG00000023382	exosc1	93	80.357	ENSSFOG00015016289	-	98	80.357	Scleropages_formosus
ENSXMAG00000023382	exosc1	94	76.289	ENSSMAG00000003721	exosc1	100	76.289	Scophthalmus_maximus
ENSXMAG00000023382	exosc1	94	75.258	ENSSDUG00000002993	exosc1	100	75.258	Seriola_dumerili
ENSXMAG00000023382	exosc1	94	75.258	ENSSLDG00000025181	exosc1	100	75.258	Seriola_lalandi_dorsalis
ENSXMAG00000023382	exosc1	93	64.921	ENSSARG00000000162	EXOSC1	98	64.921	Sorex_araneus
ENSXMAG00000023382	exosc1	93	61.257	ENSSPUG00000012263	EXOSC1	98	61.257	Sphenodon_punctatus
ENSXMAG00000023382	exosc1	98	69.000	ENSSPAG00000016792	exosc1	86	69.000	Stegastes_partitus
ENSXMAG00000023382	exosc1	93	66.492	ENSSSCG00000010518	EXOSC1	89	66.492	Sus_scrofa
ENSXMAG00000023382	exosc1	93	64.921	ENSTGUG00000009692	EXOSC1	98	64.921	Taeniopygia_guttata
ENSXMAG00000023382	exosc1	92	68.947	ENSTRUG00000007706	exosc1	98	68.947	Takifugu_rubripes
ENSXMAG00000023382	exosc1	92	67.876	ENSTNIG00000014079	exosc1	97	67.876	Tetraodon_nigroviridis
ENSXMAG00000023382	exosc1	93	65.263	ENSTBEG00000006011	EXOSC1	98	65.263	Tupaia_belangeri
ENSXMAG00000023382	exosc1	89	66.848	ENSTTRG00000009887	EXOSC1	100	66.848	Tursiops_truncatus
ENSXMAG00000023382	exosc1	93	56.395	ENSUAMG00000010266	EXOSC1	98	56.395	Ursus_americanus
ENSXMAG00000023382	exosc1	93	57.485	ENSUMAG00000022002	EXOSC1	98	57.485	Ursus_maritimus
ENSXMAG00000023382	exosc1	93	67.016	ENSVVUG00000023192	EXOSC1	62	67.016	Vulpes_vulpes
ENSXMAG00000023382	exosc1	94	62.887	ENSXETG00000003434	exosc1	100	62.887	Xenopus_tropicalis
ENSXMAG00000023382	exosc1	68	100.000	ENSXCOG00000014499	exosc1	93	100.000	Xiphophorus_couchianus