EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000023472 (Gene tree)
Gene ID: 111609749
Gene Symbol: -
Alias: si:dkeyp-11g8.2|si:dkeyp-11g8.4|wu:fb81g09
Full Name: SWT1%2C RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 23843 bases
Position: chr9:4946374-4970216
Accession: 111609749
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000027788	PIN_4	PF13638.6	3.9e-29	1	1
ENSXMAP00000041643	PIN_4	PF13638.6	4e-29	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000027168	-	4766	XM_023339960	ENSXMAP00000041643	973 (aa)	XP_023195728	UPI000C6E35CF
ENSXMAT00000023856	-	4739	XM_023339961	ENSXMAP00000027788	964 (aa)	XP_023195729	UPI000C6E68CA

Gene Model

Click here to download ENSXMAG00000023472's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000023472's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000023472	-	60	33.779	ENSG00000116668	SWT1	61	33.779	Homo_sapiens
ENSXMAG00000023472	-	98	52.147	ENSAPOG00000014897	-	99	52.270	Acanthochromis_polyacanthus
ENSXMAG00000023472	-	69	32.528	ENSAMEG00000013585	SWT1	72	32.662	Ailuropoda_melanoleuca
ENSXMAG00000023472	-	97	51.663	ENSAOCG00000013932	swt1	100	51.264	Amphiprion_ocellaris
ENSXMAG00000023472	-	98	51.590	ENSAPEG00000009613	-	100	51.362	Amphiprion_percula
ENSXMAG00000023472	-	98	50.924	ENSATEG00000018946	swt1	99	51.158	Anabas_testudineus
ENSXMAG00000023472	-	58	38.276	ENSAPLG00000008607	SWT1	74	38.276	Anas_platyrhynchos
ENSXMAG00000023472	-	51	48.131	ENSACAG00000002276	SWT1	59	48.131	Anolis_carolinensis
ENSXMAG00000023472	-	60	33.550	ENSANAG00000027068	SWT1	61	33.550	Aotus_nancymaae
ENSXMAG00000023472	-	76	63.303	ENSACLG00000009742	swt1	93	64.404	Astatotilapia_calliptera
ENSXMAG00000023472	-	62	45.964	ENSAMXG00000010971	swt1	60	45.964	Astyanax_mexicanus
ENSXMAG00000023472	-	72	31.317	ENSCJAG00000005544	SWT1	75	31.317	Callithrix_jacchus
ENSXMAG00000023472	-	62	32.528	ENSCAFG00000013543	SWT1	64	32.432	Canis_familiaris
ENSXMAG00000023472	-	62	32.528	ENSCAFG00020015648	SWT1	67	32.680	Canis_lupus_dingo
ENSXMAG00000023472	-	59	33.615	ENSCHIG00000023511	SWT1	92	33.501	Capra_hircus
ENSXMAG00000023472	-	61	34.091	ENSTSYG00000010470	SWT1	63	34.091	Carlito_syrichta
ENSXMAG00000023472	-	57	33.969	ENSCPOG00000014251	SWT1	66	33.969	Cavia_porcellus
ENSXMAG00000023472	-	72	31.909	ENSCCAG00000033926	SWT1	75	31.909	Cebus_capucinus
ENSXMAG00000023472	-	61	33.496	ENSCATG00000042210	SWT1	96	33.663	Cercocebus_atys
ENSXMAG00000023472	-	59	34.175	ENSCLAG00000013959	SWT1	61	34.530	Chinchilla_lanigera
ENSXMAG00000023472	-	60	33.887	ENSCSAG00000012895	SWT1	61	33.887	Chlorocebus_sabaeus
ENSXMAG00000023472	-	58	35.616	ENSCPBG00000015691	SWT1	60	35.616	Chrysemys_picta_bellii
ENSXMAG00000023472	-	61	33.225	ENSCANG00000032207	SWT1	96	33.721	Colobus_angolensis_palliatus
ENSXMAG00000023472	-	60	33.555	ENSCGRG00001022955	Swt1	65	33.555	Cricetulus_griseus_chok1gshd
ENSXMAG00000023472	-	60	33.555	ENSCGRG00000010224	Swt1	62	33.555	Cricetulus_griseus_crigri
ENSXMAG00000023472	-	62	59.008	ENSCSEG00000017352	swt1	98	52.026	Cynoglossus_semilaevis
ENSXMAG00000023472	-	60	46.780	ENSDARG00000094010	swt1	57	46.701	Danio_rerio
ENSXMAG00000023472	-	53	32.955	ENSDNOG00000005254	SWT1	59	32.955	Dasypus_novemcinctus
ENSXMAG00000023472	-	59	33.390	ENSDORG00000010531	Swt1	65	33.618	Dipodomys_ordii
ENSXMAG00000023472	-	58	33.677	ENSEASG00005005530	SWT1	63	33.677	Equus_asinus_asinus
ENSXMAG00000023472	-	60	50.761	ENSELUG00000020565	swt1	56	52.062	Esox_lucius
ENSXMAG00000023472	-	59	34.576	ENSFCAG00000011286	SWT1	60	34.768	Felis_catus
ENSXMAG00000023472	-	62	35.397	ENSFALG00000003206	SWT1	65	35.397	Ficedula_albicollis
ENSXMAG00000023472	-	60	34.596	ENSFDAG00000007569	SWT1	62	34.596	Fukomys_damarensis
ENSXMAG00000023472	-	58	36.426	ENSGALG00000034230	SWT1	62	36.942	Gallus_gallus
ENSXMAG00000023472	-	100	93.886	ENSGAFG00000007803	-	100	93.886	Gambusia_affinis
ENSXMAG00000023472	-	59	36.222	ENSGAGG00000025050	SWT1	93	36.159	Gopherus_agassizii
ENSXMAG00000023472	-	54	34.317	ENSGGOG00000041167	-	90	34.709	Gorilla_gorilla
ENSXMAG00000023472	-	79	63.130	ENSHBUG00000006188	swt1	93	64.174	Haplochromis_burtoni
ENSXMAG00000023472	-	59	35.413	ENSHGLG00000006542	SWT1	63	35.413	Heterocephalus_glaber_female
ENSXMAG00000023472	-	59	35.275	ENSHGLG00100014408	SWT1	61	35.275	Heterocephalus_glaber_male
ENSXMAG00000023472	-	69	42.029	ENSIPUG00000009113	-	68	42.878	Ictalurus_punctatus
ENSXMAG00000023472	-	68	32.706	ENSSTOG00000010356	SWT1	73	32.706	Ictidomys_tridecemlineatus
ENSXMAG00000023472	-	59	34.655	ENSJJAG00000015927	Swt1	63	34.655	Jaculus_jaculus
ENSXMAG00000023472	-	99	52.888	ENSKMAG00000012533	swt1	99	52.077	Kryptolebias_marmoratus
ENSXMAG00000023472	-	96	49.896	ENSLBEG00000020663	-	99	49.598	Labrus_bergylta
ENSXMAG00000023472	-	60	36.887	ENSLACG00000009194	SWT1	79	36.887	Latimeria_chalumnae
ENSXMAG00000023472	-	58	41.207	ENSLOCG00000001749	swt1	99	41.289	Lepisosteus_oculatus
ENSXMAG00000023472	-	59	31.993	ENSLAFG00000004346	-	93	32.131	Loxodonta_africana
ENSXMAG00000023472	-	60	33.721	ENSMFAG00000031793	SWT1	96	33.721	Macaca_fascicularis
ENSXMAG00000023472	-	62	32.476	ENSMMUG00000013882	SWT1	95	33.557	Macaca_mulatta
ENSXMAG00000023472	-	60	33.777	ENSMNEG00000035502	SWT1	96	33.721	Macaca_nemestrina
ENSXMAG00000023472	-	61	33.333	ENSMLEG00000038692	SWT1	96	33.498	Mandrillus_leucophaeus
ENSXMAG00000023472	-	79	62.957	ENSMZEG00005018489	swt1	93	64.000	Maylandia_zebra
ENSXMAG00000023472	-	58	36.486	ENSMGAG00000000973	SWT1	83	52.500	Meleagris_gallopavo
ENSXMAG00000023472	-	69	30.592	ENSMAUG00000007996	Swt1	70	30.657	Mesocricetus_auratus
ENSXMAG00000023472	-	60	34.114	ENSMICG00000014975	SWT1	62	34.114	Microcebus_murinus
ENSXMAG00000023472	-	69	32.766	ENSMOCG00000009776	Swt1	72	32.997	Microtus_ochrogaster
ENSXMAG00000023472	-	60	33.444	ENSMODG00000007472	SWT1	60	33.950	Monodelphis_domestica
ENSXMAG00000023472	-	98	49.535	ENSMALG00000019308	swt1	99	49.339	Monopterus_albus
ENSXMAG00000023472	-	69	32.386	MGP_CAROLIEiJ_G0014692	Swt1	71	45.251	Mus_caroli
ENSXMAG00000023472	-	63	33.914	ENSMUSG00000052748	Swt1	71	44.693	Mus_musculus
ENSXMAG00000023472	-	61	34.494	MGP_PahariEiJ_G0027928	Swt1	71	44.693	Mus_pahari
ENSXMAG00000023472	-	62	34.903	MGP_SPRETEiJ_G0015499	Swt1	71	45.810	Mus_spretus
ENSXMAG00000023472	-	62	33.816	ENSMPUG00000011913	SWT1	64	33.816	Mustela_putorius_furo
ENSXMAG00000023472	-	59	33.166	ENSMLUG00000001142	SWT1	59	33.618	Myotis_lucifugus
ENSXMAG00000023472	-	59	34.932	ENSNGAG00000021080	Swt1	60	34.932	Nannospalax_galili
ENSXMAG00000023472	-	60	33.723	ENSNLEG00000018031	SWT1	61	33.723	Nomascus_leucogenys
ENSXMAG00000023472	-	78	61.231	ENSONIG00000009994	swt1	94	62.604	Oreochromis_niloticus
ENSXMAG00000023472	-	58	32.765	ENSOANG00000001013	-	69	32.765	Ornithorhynchus_anatinus
ENSXMAG00000023472	-	68	33.528	ENSOCUG00000004901	SWT1	72	33.528	Oryctolagus_cuniculus
ENSXMAG00000023472	-	96	48.087	ENSORLG00000009682	swt1	99	47.538	Oryzias_latipes
ENSXMAG00000023472	-	98	48.377	ENSORLG00020011654	swt1	99	48.196	Oryzias_latipes_hni
ENSXMAG00000023472	-	96	48.604	ENSORLG00015007734	swt1	99	48.241	Oryzias_latipes_hsok
ENSXMAG00000023472	-	98	47.826	ENSOMEG00000006607	swt1	99	48.252	Oryzias_melastigma
ENSXMAG00000023472	-	51	45.070	ENSOGAG00000016195	SWT1	62	34.609	Otolemur_garnettii
ENSXMAG00000023472	-	59	33.446	ENSOARG00000004156	SWT1	59	33.447	Ovis_aries
ENSXMAG00000023472	-	60	33.779	ENSPPAG00000021400	SWT1	61	33.779	Pan_paniscus
ENSXMAG00000023472	-	60	35.158	ENSPPRG00000023754	SWT1	62	35.158	Panthera_pardus
ENSXMAG00000023472	-	60	35.158	ENSPTIG00000021889	SWT1	62	35.158	Panthera_tigris_altaica
ENSXMAG00000023472	-	60	34.057	ENSPTRG00000001777	SWT1	61	34.057	Pan_troglodytes
ENSXMAG00000023472	-	61	33.333	ENSPANG00000005099	SWT1	96	33.333	Papio_anubis
ENSXMAG00000023472	-	60	46.374	ENSPKIG00000005979	swt1	59	46.374	Paramormyrops_kingsleyae
ENSXMAG00000023472	-	59	34.564	ENSPSIG00000008961	SWT1	60	35.094	Pelodiscus_sinensis
ENSXMAG00000023472	-	69	33.475	ENSPEMG00000008208	Swt1	72	33.619	Peromyscus_maniculatus_bairdii
ENSXMAG00000023472	-	59	31.796	ENSPCIG00000002443	SWT1	60	32.554	Phascolarctos_cinereus
ENSXMAG00000023472	-	100	90.383	ENSPFOG00000010988	-	100	90.383	Poecilia_formosa
ENSXMAG00000023472	-	100	90.279	ENSPLAG00000022908	-	100	90.279	Poecilia_latipinna
ENSXMAG00000023472	-	100	89.990	ENSPMEG00000006943	-	100	89.990	Poecilia_mexicana
ENSXMAG00000023472	-	67	88.545	ENSPREG00000014723	-	92	88.545	Poecilia_reticulata
ENSXMAG00000023472	-	61	34.189	ENSPPYG00000000415	SWT1	62	34.539	Pongo_abelii
ENSXMAG00000023472	-	59	32.247	ENSPVAG00000005968	SWT1	60	32.358	Pteropus_vampyrus
ENSXMAG00000023472	-	79	63.130	ENSPNYG00000012934	swt1	93	64.174	Pundamilia_nyererei
ENSXMAG00000023472	-	69	43.353	ENSPNAG00000017795	swt1	69	43.290	Pygocentrus_nattereri
ENSXMAG00000023472	-	69	32.000	ENSRNOG00000032258	Swt1	71	32.895	Rattus_norvegicus
ENSXMAG00000023472	-	61	33.388	ENSRBIG00000040630	SWT1	96	33.890	Rhinopithecus_bieti
ENSXMAG00000023472	-	72	32.289	ENSSBOG00000028825	SWT1	75	31.776	Saimiri_boliviensis_boliviensis
ENSXMAG00000023472	-	59	33.782	ENSSHAG00000009241	SWT1	60	34.583	Sarcophilus_harrisii
ENSXMAG00000023472	-	60	46.233	ENSSFOG00015004895	swt1	56	46.154	Scleropages_formosus
ENSXMAG00000023472	-	74	56.768	ENSSMAG00000020761	-	86	57.939	Scophthalmus_maximus
ENSXMAG00000023472	-	98	52.268	ENSSDUG00000012345	swt1	99	51.980	Seriola_dumerili
ENSXMAG00000023472	-	98	52.268	ENSSLDG00000003821	swt1	99	52.333	Seriola_lalandi_dorsalis
ENSXMAG00000023472	-	58	36.301	ENSSPUG00000003899	SWT1	56	51.546	Sphenodon_punctatus
ENSXMAG00000023472	-	97	52.692	ENSSPAG00000001030	swt1	99	52.266	Stegastes_partitus
ENSXMAG00000023472	-	60	33.831	ENSSSCG00000015569	SWT1	63	34.739	Sus_scrofa
ENSXMAG00000023472	-	59	35.025	ENSTGUG00000003718	-	97	35.739	Taeniopygia_guttata
ENSXMAG00000023472	-	99	43.151	ENSTRUG00000006420	swt1	99	43.151	Takifugu_rubripes
ENSXMAG00000023472	-	59	32.886	ENSTTRG00000005914	SWT1	60	33.049	Tursiops_truncatus
ENSXMAG00000023472	-	69	32.575	ENSUAMG00000020937	SWT1	78	32.709	Ursus_americanus
ENSXMAG00000023472	-	69	32.528	ENSUMAG00000021918	SWT1	74	32.444	Ursus_maritimus
ENSXMAG00000023472	-	63	32.857	ENSVVUG00000009182	SWT1	67	33.011	Vulpes_vulpes