EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000023885 (Gene tree)
Gene ID: 102219509
Gene Symbol: cth1
Alias: cb266|fa18c01|wu:fa18c01|zfcth1
Full Name: mRNA decay activator protein ZFP36L2-A-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 2211 bases
Position: chr14:4007043-4009253
Accession: 102219509
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000028952	zf-CCCH	PF00642.24	4.2e-30	1	3
ENSXMAP00000028952	zf-CCCH	PF00642.24	4.2e-30	2	3
ENSXMAP00000028952	zf-CCCH	PF00642.24	4.2e-30	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000041890	-	1446	XM_005807931	ENSXMAP00000028952	313 (aa)	XP_005807988	UPI0003B3A0FA

Gene Model

Click here to download ENSXMAG00000023885's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma04114	Oocyte meiosis	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000023885's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000023885	cth1	89	62.766	ENSAPOG00000012552	cth1	99	65.541	Acanthochromis_polyacanthus
ENSXMAG00000023885	cth1	88	57.554	ENSACIG00000016026	cth1	99	58.307	Amphilophus_citrinellus
ENSXMAG00000023885	cth1	100	63.492	ENSAOCG00000001644	cth1	100	64.984	Amphiprion_ocellaris
ENSXMAG00000023885	cth1	100	63.492	ENSAPEG00000008930	cth1	100	64.984	Amphiprion_percula
ENSXMAG00000023885	cth1	99	65.217	ENSATEG00000002281	cth1	97	64.907	Anabas_testudineus
ENSXMAG00000023885	cth1	90	54.448	ENSACLG00000015353	cth1	100	56.271	Astatotilapia_calliptera
ENSXMAG00000023885	cth1	96	51.875	ENSAMXG00000025717	cth1	98	53.292	Astyanax_mexicanus
ENSXMAG00000023885	cth1	100	59.385	ENSCSEG00000014617	cth1	100	60.909	Cynoglossus_semilaevis
ENSXMAG00000023885	cth1	100	64.151	ENSCVAG00000001680	cth1	65	66.352	Cyprinodon_variegatus
ENSXMAG00000023885	cth1	91	49.833	ENSDARG00000057328	cth1	99	52.615	Danio_rerio
ENSXMAG00000023885	cth1	99	50.592	ENSELUG00000012738	cth1	99	50.148	Esox_lucius
ENSXMAG00000023885	cth1	100	72.930	ENSFHEG00000022665	cth1	100	73.567	Fundulus_heteroclitus
ENSXMAG00000023885	cth1	99	58.621	ENSGMOG00000007360	cth1	100	57.729	Gadus_morhua
ENSXMAG00000023885	cth1	100	88.608	ENSGAFG00000019288	cth1	100	88.608	Gambusia_affinis
ENSXMAG00000023885	cth1	99	59.683	ENSGACG00000000802	cth1	99	59.683	Gasterosteus_aculeatus
ENSXMAG00000023885	cth1	100	55.591	ENSHBUG00000014400	cth1	100	55.911	Haplochromis_burtoni
ENSXMAG00000023885	cth1	99	48.562	ENSHCOG00000010276	cth1	99	48.553	Hippocampus_comes
ENSXMAG00000023885	cth1	96	52.201	ENSIPUG00000018040	cth1	95	52.848	Ictalurus_punctatus
ENSXMAG00000023885	cth1	100	60.317	ENSKMAG00000005944	cth1	100	61.270	Kryptolebias_marmoratus
ENSXMAG00000023885	cth1	100	63.043	ENSLBEG00000019253	cth1	100	62.975	Labrus_bergylta
ENSXMAG00000023885	cth1	67	48.826	ENSLOCG00000002047	cth1	97	49.296	Lepisosteus_oculatus
ENSXMAG00000023885	cth1	99	47.849	ENSMAMG00000001525	cth1	99	48.925	Mastacembelus_armatus
ENSXMAG00000023885	cth1	100	56.230	ENSMZEG00005022335	cth1	100	56.550	Maylandia_zebra
ENSXMAG00000023885	cth1	94	61.438	ENSMMOG00000020518	cth1	100	62.418	Mola_mola
ENSXMAG00000023885	cth1	100	54.692	ENSMALG00000020738	cth1	61	57.872	Monopterus_albus
ENSXMAG00000023885	cth1	88	56.318	ENSNBRG00000022789	cth1	88	56.679	Neolamprologus_brichardi
ENSXMAG00000023885	cth1	99	55.911	ENSONIG00000021318	cth1	99	54.403	Oreochromis_niloticus
ENSXMAG00000023885	cth1	100	53.185	ENSORLG00000022847	cth1	100	56.190	Oryzias_latipes
ENSXMAG00000023885	cth1	100	53.185	ENSORLG00020011979	cth1	100	56.508	Oryzias_latipes_hni
ENSXMAG00000023885	cth1	100	53.503	ENSORLG00015013084	cth1	100	56.051	Oryzias_latipes_hsok
ENSXMAG00000023885	cth1	82	58.366	ENSOMEG00000005809	cth1	85	56.369	Oryzias_melastigma
ENSXMAG00000023885	cth1	97	49.074	ENSPKIG00000015883	cth1	95	49.074	Paramormyrops_kingsleyae
ENSXMAG00000023885	cth1	99	59.327	ENSPMGG00000004275	cth1	100	61.538	Periophthalmus_magnuspinnatus
ENSXMAG00000023885	cth1	100	86.943	ENSPFOG00000013583	cth1	94	86.943	Poecilia_formosa
ENSXMAG00000023885	cth1	100	87.580	ENSPLAG00000018158	cth1	94	87.580	Poecilia_latipinna
ENSXMAG00000023885	cth1	100	86.943	ENSPMEG00000005744	cth1	100	86.943	Poecilia_mexicana
ENSXMAG00000023885	cth1	99	86.262	ENSPREG00000004099	cth1	100	86.262	Poecilia_reticulata
ENSXMAG00000023885	cth1	89	54.839	ENSPNYG00000016705	cth1	91	55.197	Pundamilia_nyererei
ENSXMAG00000023885	cth1	96	52.665	ENSPNAG00000013147	cth1	95	52.830	Pygocentrus_nattereri
ENSXMAG00000023885	cth1	91	53.488	ENSSFOG00015017190	cth1	94	51.645	Scleropages_formosus
ENSXMAG00000023885	cth1	100	63.240	ENSSMAG00000007977	cth1	100	65.421	Scophthalmus_maximus
ENSXMAG00000023885	cth1	100	65.549	ENSSDUG00000004321	cth1	100	66.159	Seriola_dumerili
ENSXMAG00000023885	cth1	100	64.134	ENSSLDG00000012760	cth1	100	65.046	Seriola_lalandi_dorsalis
ENSXMAG00000023885	cth1	99	63.720	ENSSLDG00000010023	-	100	64.634	Seriola_lalandi_dorsalis
ENSXMAG00000023885	cth1	100	63.526	ENSSLDG00000004516	-	100	64.438	Seriola_lalandi_dorsalis
ENSXMAG00000023885	cth1	100	62.776	ENSSPAG00000018659	cth1	100	65.615	Stegastes_partitus
ENSXMAG00000023885	cth1	100	59.119	ENSTRUG00000012770	cth1	100	59.119	Takifugu_rubripes
ENSXMAG00000023885	cth1	100	58.491	ENSTNIG00000000740	cth1	100	58.491	Tetraodon_nigroviridis
ENSXMAG00000023885	cth1	83	77.606	ENSXCOG00000003710	cth1	88	77.606	Xiphophorus_couchianus