EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000024670 (Gene tree)
Gene ID: 102231355
Gene Symbol: cpsf4
Alias: nar|no arches
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 7526 bases
Position: chr16:19120092-19127617
Accession: 102231355
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000038422	zf-CCCH	PF00642.24	9.3e-22	1	2
ENSXMAP00000038422	zf-CCCH	PF00642.24	9.3e-22	2	2
ENSXMAP00000038422	zf-CCHC	PF00098.23	0.00015	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000041313	-	5302	XM_005808808	ENSXMAP00000038422	264 (aa)	XP_005808865	M3ZN55

Gene Model

Click here to download ENSXMAG00000024670's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000024670's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000024670	cpsf4	100	82.222	ENSG00000160917	CPSF4	100	97.321	Homo_sapiens
ENSXMAG00000024670	cpsf4	67	81.356	ENSAPOG00000004921	cpsf4	100	81.356	Acanthochromis_polyacanthus
ENSXMAG00000024670	cpsf4	100	82.963	ENSAMEG00000006252	CPSF4	100	82.963	Ailuropoda_melanoleuca
ENSXMAG00000024670	cpsf4	100	82.955	ENSACIG00000009248	cpsf4	100	84.091	Amphilophus_citrinellus
ENSXMAG00000024670	cpsf4	100	90.566	ENSAOCG00000019616	cpsf4	100	90.566	Amphiprion_ocellaris
ENSXMAG00000024670	cpsf4	100	90.566	ENSAPEG00000011679	cpsf4	100	90.566	Amphiprion_percula
ENSXMAG00000024670	cpsf4	100	90.262	ENSATEG00000007010	cpsf4	100	90.262	Anabas_testudineus
ENSXMAG00000024670	cpsf4	100	81.111	ENSACAG00000012941	CPSF4	89	81.111	Anolis_carolinensis
ENSXMAG00000024670	cpsf4	100	82.222	ENSANAG00000021360	CPSF4	100	82.222	Aotus_nancymaae
ENSXMAG00000024670	cpsf4	100	89.057	ENSACLG00000010374	cpsf4	100	89.057	Astatotilapia_calliptera
ENSXMAG00000024670	cpsf4	100	82.609	ENSAMXG00000031647	cpsf4	100	83.696	Astyanax_mexicanus
ENSXMAG00000024670	cpsf4	100	79.545	ENSBTAG00000002090	CPSF4	100	79.167	Bos_taurus
ENSXMAG00000024670	cpsf4	100	82.222	ENSCJAG00000015826	CPSF4	100	82.222	Callithrix_jacchus
ENSXMAG00000024670	cpsf4	100	82.963	ENSCAFG00000015036	CPSF4	99	86.667	Canis_familiaris
ENSXMAG00000024670	cpsf4	100	78.519	ENSCAFG00020014462	CPSF4	100	78.519	Canis_lupus_dingo
ENSXMAG00000024670	cpsf4	100	82.222	ENSCHIG00000014313	CPSF4	100	82.222	Capra_hircus
ENSXMAG00000024670	cpsf4	100	73.208	ENSTSYG00000014604	-	100	73.208	Carlito_syrichta
ENSXMAG00000024670	cpsf4	89	74.576	ENSTSYG00000008195	-	99	74.694	Carlito_syrichta
ENSXMAG00000024670	cpsf4	100	80.682	ENSTSYG00000005712	-	100	80.682	Carlito_syrichta
ENSXMAG00000024670	cpsf4	81	82.353	ENSCAPG00000013881	CPSF4	88	81.614	Cavia_aperea
ENSXMAG00000024670	cpsf4	100	80.303	ENSCPOG00000001783	CPSF4	100	80.303	Cavia_porcellus
ENSXMAG00000024670	cpsf4	100	82.222	ENSCCAG00000028291	CPSF4	100	82.222	Cebus_capucinus
ENSXMAG00000024670	cpsf4	100	82.222	ENSCATG00000038440	CPSF4	100	82.222	Cercocebus_atys
ENSXMAG00000024670	cpsf4	100	82.593	ENSCLAG00000007050	CPSF4	100	82.593	Chinchilla_lanigera
ENSXMAG00000024670	cpsf4	100	82.222	ENSCSAG00000017795	CPSF4	100	82.222	Chlorocebus_sabaeus
ENSXMAG00000024670	cpsf4	80	82.028	ENSCPBG00000020869	CPSF4	100	82.028	Chrysemys_picta_bellii
ENSXMAG00000024670	cpsf4	63	79.518	ENSCPBG00000010269	-	100	79.518	Chrysemys_picta_bellii
ENSXMAG00000024670	cpsf4	96	57.087	ENSCING00000021080	-	96	56.917	Ciona_intestinalis
ENSXMAG00000024670	cpsf4	96	54.255	ENSCSAVG00000011469	-	97	54.255	Ciona_savignyi
ENSXMAG00000024670	cpsf4	100	82.222	ENSCANG00000019384	CPSF4	100	82.222	Colobus_angolensis_palliatus
ENSXMAG00000024670	cpsf4	100	80.303	ENSCGRG00001024184	Cpsf4	100	80.303	Cricetulus_griseus_chok1gshd
ENSXMAG00000024670	cpsf4	100	82.963	ENSCGRG00000013892	Cpsf4	100	82.963	Cricetulus_griseus_crigri
ENSXMAG00000024670	cpsf4	100	87.925	ENSCSEG00000019055	cpsf4	100	87.925	Cynoglossus_semilaevis
ENSXMAG00000024670	cpsf4	100	95.472	ENSCVAG00000016528	cpsf4	100	95.472	Cyprinodon_variegatus
ENSXMAG00000024670	cpsf4	100	84.133	ENSDARG00000020217	cpsf4	100	84.133	Danio_rerio
ENSXMAG00000024670	cpsf4	100	82.593	ENSDNOG00000006344	CPSF4	100	82.593	Dasypus_novemcinctus
ENSXMAG00000024670	cpsf4	80	83.028	ENSDORG00000000742	Cpsf4	100	83.028	Dipodomys_ordii
ENSXMAG00000024670	cpsf4	100	55.479	FBgn0015621	Clp	99	56.164	Drosophila_melanogaster
ENSXMAG00000024670	cpsf4	71	92.121	ENSETEG00000002608	CPSF4	70	92.121	Echinops_telfairi
ENSXMAG00000024670	cpsf4	99	66.794	ENSEBUG00000012552	cpsf4	98	66.794	Eptatretus_burgeri
ENSXMAG00000024670	cpsf4	100	80.303	ENSEASG00005002487	CPSF4	100	80.303	Equus_asinus_asinus
ENSXMAG00000024670	cpsf4	100	82.963	ENSECAG00000007525	CPSF4	100	82.963	Equus_caballus
ENSXMAG00000024670	cpsf4	63	92.537	ENSEEUG00000002158	CPSF4	73	92.537	Erinaceus_europaeus
ENSXMAG00000024670	cpsf4	100	82.721	ENSELUG00000011481	cpsf4	100	82.721	Esox_lucius
ENSXMAG00000024670	cpsf4	100	82.963	ENSFCAG00000015070	CPSF4	100	82.963	Felis_catus
ENSXMAG00000024670	cpsf4	63	56.977	ENSFALG00000012906	-	100	56.977	Ficedula_albicollis
ENSXMAG00000024670	cpsf4	100	80.303	ENSFALG00000013799	CPSF4	100	80.303	Ficedula_albicollis
ENSXMAG00000024670	cpsf4	90	81.557	ENSFDAG00000014092	CPSF4	100	81.967	Fukomys_damarensis
ENSXMAG00000024670	cpsf4	100	96.226	ENSFHEG00000010880	cpsf4	100	96.226	Fundulus_heteroclitus
ENSXMAG00000024670	cpsf4	100	82.707	ENSGMOG00000002330	cpsf4	100	82.707	Gadus_morhua
ENSXMAG00000024670	cpsf4	99	35.912	ENSGALG00000004441	-	98	35.912	Gallus_gallus
ENSXMAG00000024670	cpsf4	100	80.303	ENSGALG00000004714	CPSF4	100	80.303	Gallus_gallus
ENSXMAG00000024670	cpsf4	100	100.000	ENSGAFG00000010580	cpsf4	100	100.000	Gambusia_affinis
ENSXMAG00000024670	cpsf4	100	83.521	ENSGACG00000007792	cpsf4	100	83.521	Gasterosteus_aculeatus
ENSXMAG00000024670	cpsf4	69	76.374	ENSGAGG00000020579	-	100	76.374	Gopherus_agassizii
ENSXMAG00000024670	cpsf4	100	82.963	ENSGAGG00000021835	CPSF4	100	82.963	Gopherus_agassizii
ENSXMAG00000024670	cpsf4	100	82.222	ENSGGOG00000015131	CPSF4	100	82.222	Gorilla_gorilla
ENSXMAG00000024670	cpsf4	100	89.057	ENSHBUG00000013699	cpsf4	100	89.057	Haplochromis_burtoni
ENSXMAG00000024670	cpsf4	100	82.657	ENSHGLG00000017150	CPSF4	100	82.657	Heterocephalus_glaber_female
ENSXMAG00000024670	cpsf4	67	63.277	ENSHGLG00100017302	-	89	64.211	Heterocephalus_glaber_male
ENSXMAG00000024670	cpsf4	87	80.085	ENSHGLG00100009215	-	100	80.085	Heterocephalus_glaber_male
ENSXMAG00000024670	cpsf4	100	88.302	ENSHCOG00000004397	cpsf4	100	88.302	Hippocampus_comes
ENSXMAG00000024670	cpsf4	100	83.026	ENSIPUG00000017147	cpsf4	100	84.502	Ictalurus_punctatus
ENSXMAG00000024670	cpsf4	100	82.963	ENSSTOG00000001688	CPSF4	100	82.963	Ictidomys_tridecemlineatus
ENSXMAG00000024670	cpsf4	100	82.593	ENSJJAG00000019426	Cpsf4	100	82.593	Jaculus_jaculus
ENSXMAG00000024670	cpsf4	100	90.566	ENSKMAG00000015642	cpsf4	100	90.566	Kryptolebias_marmoratus
ENSXMAG00000024670	cpsf4	100	59.623	ENSLACG00000018470	-	100	59.623	Latimeria_chalumnae
ENSXMAG00000024670	cpsf4	100	83.395	ENSLACG00000010938	CPSF4	100	83.395	Latimeria_chalumnae
ENSXMAG00000024670	cpsf4	100	82.900	ENSLOCG00000004814	cpsf4	100	82.900	Lepisosteus_oculatus
ENSXMAG00000024670	cpsf4	100	82.593	ENSLAFG00000000159	CPSF4	100	82.593	Loxodonta_africana
ENSXMAG00000024670	cpsf4	100	82.222	ENSMFAG00000001462	CPSF4	100	82.222	Macaca_fascicularis
ENSXMAG00000024670	cpsf4	100	82.222	ENSMMUG00000019191	CPSF4	100	82.222	Macaca_mulatta
ENSXMAG00000024670	cpsf4	100	82.222	ENSMNEG00000032306	CPSF4	100	82.222	Macaca_nemestrina
ENSXMAG00000024670	cpsf4	100	82.222	ENSMLEG00000034721	CPSF4	100	82.222	Mandrillus_leucophaeus
ENSXMAG00000024670	cpsf4	100	89.098	ENSMAMG00000006244	cpsf4	100	89.098	Mastacembelus_armatus
ENSXMAG00000024670	cpsf4	100	89.057	ENSMZEG00005007515	cpsf4	100	89.057	Maylandia_zebra
ENSXMAG00000024670	cpsf4	87	78.261	ENSMGAG00000004235	CPSF4	100	78.261	Meleagris_gallopavo
ENSXMAG00000024670	cpsf4	100	82.963	ENSMAUG00000021253	Cpsf4	100	82.963	Mesocricetus_auratus
ENSXMAG00000024670	cpsf4	100	82.222	ENSMICG00000017429	CPSF4	100	82.222	Microcebus_murinus
ENSXMAG00000024670	cpsf4	100	82.963	ENSMOCG00000014901	Cpsf4	100	82.963	Microtus_ochrogaster
ENSXMAG00000024670	cpsf4	100	89.850	ENSMMOG00000001813	cpsf4	100	89.850	Mola_mola
ENSXMAG00000024670	cpsf4	100	82.963	ENSMODG00000001367	CPSF4	100	82.963	Monodelphis_domestica
ENSXMAG00000024670	cpsf4	100	89.098	ENSMALG00000012611	cpsf4	100	89.098	Monopterus_albus
ENSXMAG00000024670	cpsf4	100	82.963	MGP_CAROLIEiJ_G0028012	Cpsf4	100	82.963	Mus_caroli
ENSXMAG00000024670	cpsf4	100	82.963	MGP_PahariEiJ_G0024581	Cpsf4	100	82.963	Mus_pahari
ENSXMAG00000024670	cpsf4	100	82.593	MGP_SPRETEiJ_G0029013	Cpsf4	100	82.593	Mus_spretus
ENSXMAG00000024670	cpsf4	100	82.963	ENSMPUG00000016508	CPSF4	100	82.963	Mustela_putorius_furo
ENSXMAG00000024670	cpsf4	87	78.696	ENSMLUG00000010980	CPSF4	100	77.826	Myotis_lucifugus
ENSXMAG00000024670	cpsf4	100	82.963	ENSNGAG00000001567	Cpsf4	100	82.963	Nannospalax_galili
ENSXMAG00000024670	cpsf4	91	88.382	ENSNBRG00000003943	cpsf4	98	88.382	Neolamprologus_brichardi
ENSXMAG00000024670	cpsf4	100	80.755	ENSNLEG00000011074	CPSF4	100	80.755	Nomascus_leucogenys
ENSXMAG00000024670	cpsf4	100	82.963	ENSMEUG00000006955	CPSF4	100	82.963	Notamacropus_eugenii
ENSXMAG00000024670	cpsf4	100	82.222	ENSOPRG00000013663	CPSF4	100	82.222	Ochotona_princeps
ENSXMAG00000024670	cpsf4	100	63.603	ENSODEG00000009779	-	100	63.603	Octodon_degus
ENSXMAG00000024670	cpsf4	100	82.963	ENSODEG00000011181	-	100	82.963	Octodon_degus
ENSXMAG00000024670	cpsf4	98	68.077	ENSODEG00000018283	-	91	68.077	Octodon_degus
ENSXMAG00000024670	cpsf4	100	89.057	ENSONIG00000008495	cpsf4	100	89.057	Oreochromis_niloticus
ENSXMAG00000024670	cpsf4	87	81.277	ENSOANG00000007729	CPSF4	100	81.277	Ornithorhynchus_anatinus
ENSXMAG00000024670	cpsf4	100	53.047	ENSOANG00000009568	-	100	53.047	Ornithorhynchus_anatinus
ENSXMAG00000024670	cpsf4	100	82.222	ENSOCUG00000002437	CPSF4	70	82.222	Oryctolagus_cuniculus
ENSXMAG00000024670	cpsf4	100	91.698	ENSORLG00000022798	cpsf4	100	91.698	Oryzias_latipes
ENSXMAG00000024670	cpsf4	100	91.698	ENSORLG00020008548	cpsf4	100	91.698	Oryzias_latipes_hni
ENSXMAG00000024670	cpsf4	100	91.321	ENSORLG00015019575	cpsf4	100	91.321	Oryzias_latipes_hsok
ENSXMAG00000024670	cpsf4	100	90.566	ENSOMEG00000005176	cpsf4	100	90.566	Oryzias_melastigma
ENSXMAG00000024670	cpsf4	100	82.593	ENSOGAG00000010884	CPSF4	100	82.593	Otolemur_garnettii
ENSXMAG00000024670	cpsf4	100	71.898	ENSOARG00000018668	CPSF4	100	71.898	Ovis_aries
ENSXMAG00000024670	cpsf4	100	82.222	ENSPPAG00000043355	CPSF4	100	82.222	Pan_paniscus
ENSXMAG00000024670	cpsf4	100	82.963	ENSPPRG00000003134	CPSF4	100	82.963	Panthera_pardus
ENSXMAG00000024670	cpsf4	90	82.305	ENSPTIG00000005604	CPSF4	90	82.305	Panthera_tigris_altaica
ENSXMAG00000024670	cpsf4	100	82.222	ENSPTRG00000019453	CPSF4	100	82.222	Pan_troglodytes
ENSXMAG00000024670	cpsf4	100	82.222	ENSPANG00000023123	CPSF4	100	82.222	Papio_anubis
ENSXMAG00000024670	cpsf4	100	81.022	ENSPKIG00000014278	cpsf4	100	81.022	Paramormyrops_kingsleyae
ENSXMAG00000024670	cpsf4	80	81.567	ENSPSIG00000011229	CPSF4	100	81.567	Pelodiscus_sinensis
ENSXMAG00000024670	cpsf4	81	59.813	ENSPSIG00000018198	-	100	59.813	Pelodiscus_sinensis
ENSXMAG00000024670	cpsf4	100	78.030	ENSPMGG00000017735	cpsf4	100	78.030	Periophthalmus_magnuspinnatus
ENSXMAG00000024670	cpsf4	100	82.963	ENSPEMG00000004508	Cpsf4	100	82.963	Peromyscus_maniculatus_bairdii
ENSXMAG00000024670	cpsf4	100	82.963	ENSPCIG00000024776	CPSF4	100	82.963	Phascolarctos_cinereus
ENSXMAG00000024670	cpsf4	100	100.000	ENSPFOG00000014912	cpsf4	100	100.000	Poecilia_formosa
ENSXMAG00000024670	cpsf4	100	91.288	ENSPLAG00000009599	cpsf4	100	91.288	Poecilia_latipinna
ENSXMAG00000024670	cpsf4	100	100.000	ENSPMEG00000009790	cpsf4	100	100.000	Poecilia_mexicana
ENSXMAG00000024670	cpsf4	100	99.242	ENSPREG00000018166	cpsf4	100	99.242	Poecilia_reticulata
ENSXMAG00000024670	cpsf4	87	80.851	ENSPPYG00000017378	CPSF4	100	80.851	Pongo_abelii
ENSXMAG00000024670	cpsf4	100	82.222	ENSPCAG00000001892	CPSF4	100	82.593	Procavia_capensis
ENSXMAG00000024670	cpsf4	100	82.593	ENSPCOG00000012771	CPSF4	100	82.593	Propithecus_coquereli
ENSXMAG00000024670	cpsf4	100	78.148	ENSPVAG00000007531	CPSF4	100	78.148	Pteropus_vampyrus
ENSXMAG00000024670	cpsf4	100	89.057	ENSPNYG00000018559	cpsf4	100	89.057	Pundamilia_nyererei
ENSXMAG00000024670	cpsf4	100	82.609	ENSPNAG00000003736	cpsf4	100	84.058	Pygocentrus_nattereri
ENSXMAG00000024670	cpsf4	100	79.924	ENSRNOG00000000985	Cpsf4	100	79.545	Rattus_norvegicus
ENSXMAG00000024670	cpsf4	87	81.277	ENSRBIG00000033886	CPSF4	100	81.277	Rhinopithecus_bieti
ENSXMAG00000024670	cpsf4	100	79.924	ENSRROG00000040431	CPSF4	100	79.924	Rhinopithecus_roxellana
ENSXMAG00000024670	cpsf4	100	82.222	ENSSBOG00000020493	CPSF4	100	82.222	Saimiri_boliviensis_boliviensis
ENSXMAG00000024670	cpsf4	100	82.963	ENSSHAG00000011533	CPSF4	100	82.963	Sarcophilus_harrisii
ENSXMAG00000024670	cpsf4	100	82.609	ENSSFOG00015007883	cpsf4	100	82.609	Scleropages_formosus
ENSXMAG00000024670	cpsf4	100	84.151	ENSSMAG00000006374	cpsf4	100	84.151	Scophthalmus_maximus
ENSXMAG00000024670	cpsf4	100	90.977	ENSSDUG00000018887	cpsf4	100	90.977	Seriola_dumerili
ENSXMAG00000024670	cpsf4	100	90.602	ENSSLDG00000019078	cpsf4	100	90.602	Seriola_lalandi_dorsalis
ENSXMAG00000024670	cpsf4	87	81.702	ENSSARG00000012416	CPSF4	100	81.702	Sorex_araneus
ENSXMAG00000024670	cpsf4	97	60.156	ENSSPUG00000014803	-	98	60.156	Sphenodon_punctatus
ENSXMAG00000024670	cpsf4	100	82.222	ENSSPUG00000003549	CPSF4	100	82.222	Sphenodon_punctatus
ENSXMAG00000024670	cpsf4	100	84.470	ENSSPAG00000006174	cpsf4	100	84.470	Stegastes_partitus
ENSXMAG00000024670	cpsf4	100	79.924	ENSSSCG00000026896	CPSF4	100	79.924	Sus_scrofa
ENSXMAG00000024670	cpsf4	100	79.323	ENSTGUG00000007552	CPSF4	100	79.323	Taeniopygia_guttata
ENSXMAG00000024670	cpsf4	100	86.415	ENSTRUG00000024220	cpsf4	100	86.415	Takifugu_rubripes
ENSXMAG00000024670	cpsf4	100	87.547	ENSTNIG00000006265	cpsf4	100	87.547	Tetraodon_nigroviridis
ENSXMAG00000024670	cpsf4	87	72.340	ENSTBEG00000011406	CPSF4	100	72.340	Tupaia_belangeri
ENSXMAG00000024670	cpsf4	100	71.747	ENSTTRG00000003007	CPSF4	100	71.747	Tursiops_truncatus
ENSXMAG00000024670	cpsf4	92	79.752	ENSUAMG00000008051	CPSF4	85	78.512	Ursus_americanus
ENSXMAG00000024670	cpsf4	100	79.924	ENSUMAG00000009474	CPSF4	100	79.545	Ursus_maritimus
ENSXMAG00000024670	cpsf4	100	80.303	ENSVVUG00000008824	CPSF4	100	80.303	Vulpes_vulpes
ENSXMAG00000024670	cpsf4	99	60.370	ENSXETG00000004641	cpsf4l	99	60.370	Xenopus_tropicalis
ENSXMAG00000024670	cpsf4	100	78.495	ENSXETG00000009892	cpsf4	100	78.853	Xenopus_tropicalis
ENSXMAG00000024670	cpsf4	100	99.621	ENSXCOG00000016040	cpsf4	100	99.621	Xiphophorus_couchianus