EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000024687 (Gene tree)
Gene ID: -
Gene Symbol: usb1
Alias: zgc:91896
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 16339 bases
Position: chr2:18013155-18029493
Accession: 102219970
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000038751	HVSL	PF09749.9	1.3e-64	1	1
ENSXMAP00000025055	HVSL	PF09749.9	4.4e-60	1	1
ENSXMAP00000032993	HVSL	PF09749.9	7e-60	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000041712	-	4200	-	ENSXMAP00000025055	304 (aa)	-	-
ENSXMAT00000031591	-	1020	XM_005796345	ENSXMAP00000038751	339 (aa)	XP_005796402	-
ENSXMAT00000030365	-	1098	-	ENSXMAP00000032993	365 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000024687's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000024687's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000024687	usb1	67	52.193	ENSG00000103005	USB1	100	53.023	Homo_sapiens
ENSXMAG00000024687	usb1	81	71.032	ENSAPOG00000011942	usb1	91	73.256	Acanthochromis_polyacanthus
ENSXMAG00000024687	usb1	67	52.632	ENSAMEG00000017205	USB1	84	52.632	Ailuropoda_melanoleuca
ENSXMAG00000024687	usb1	70	71.849	ENSACIG00000012234	usb1	87	71.849	Amphilophus_citrinellus
ENSXMAG00000024687	usb1	80	72.924	ENSAOCG00000014831	usb1	91	74.419	Amphiprion_ocellaris
ENSXMAG00000024687	usb1	80	72.563	ENSAPEG00000000296	usb1	91	74.031	Amphiprion_percula
ENSXMAG00000024687	usb1	81	72.400	ENSATEG00000009348	usb1	89	74.603	Anabas_testudineus
ENSXMAG00000024687	usb1	66	55.310	ENSAPLG00000002756	USB1	100	55.310	Anas_platyrhynchos
ENSXMAG00000024687	usb1	67	51.965	ENSACAG00000015481	USB1	100	51.965	Anolis_carolinensis
ENSXMAG00000024687	usb1	67	51.754	ENSANAG00000035640	USB1	94	49.200	Aotus_nancymaae
ENSXMAG00000024687	usb1	75	72.727	ENSACLG00000020586	usb1	89	72.727	Astatotilapia_calliptera
ENSXMAG00000024687	usb1	66	64.444	ENSAMXG00000040146	usb1	74	64.444	Astyanax_mexicanus
ENSXMAG00000024687	usb1	80	48.780	ENSBTAG00000015758	USB1	94	49.600	Bos_taurus
ENSXMAG00000024687	usb1	67	52.632	ENSCJAG00000011733	USB1	94	50.000	Callithrix_jacchus
ENSXMAG00000024687	usb1	80	47.347	ENSCAFG00000008556	USB1	62	50.427	Canis_familiaris
ENSXMAG00000024687	usb1	80	48.980	ENSCAFG00020009263	USB1	85	51.542	Canis_lupus_dingo
ENSXMAG00000024687	usb1	80	48.413	ENSCHIG00000024290	USB1	94	49.200	Capra_hircus
ENSXMAG00000024687	usb1	67	51.754	ENSTSYG00000006997	USB1	86	51.754	Carlito_syrichta
ENSXMAG00000024687	usb1	66	42.667	ENSCAPG00000009057	USB1	96	42.667	Cavia_aperea
ENSXMAG00000024687	usb1	80	48.980	ENSCPOG00000014325	USB1	83	52.889	Cavia_porcellus
ENSXMAG00000024687	usb1	67	52.193	ENSCCAG00000022132	USB1	94	49.600	Cebus_capucinus
ENSXMAG00000024687	usb1	67	52.632	ENSCATG00000032174	USB1	86	52.632	Cercocebus_atys
ENSXMAG00000024687	usb1	51	51.445	ENSCLAG00000007363	USB1	87	53.595	Chinchilla_lanigera
ENSXMAG00000024687	usb1	67	52.632	ENSCSAG00000004783	USB1	86	52.632	Chlorocebus_sabaeus
ENSXMAG00000024687	usb1	67	55.702	ENSCPBG00000026943	USB1	82	55.702	Chrysemys_picta_bellii
ENSXMAG00000024687	usb1	66	32.340	ENSCING00000011490	-	87	32.479	Ciona_intestinalis
ENSXMAG00000024687	usb1	67	34.112	ENSCSAVG00000000894	-	84	31.780	Ciona_savignyi
ENSXMAG00000024687	usb1	67	52.863	ENSCANG00000037135	USB1	86	52.863	Colobus_angolensis_palliatus
ENSXMAG00000024687	usb1	80	51.429	ENSCGRG00001011243	USB1	85	54.386	Cricetulus_griseus_chok1gshd
ENSXMAG00000024687	usb1	80	51.429	ENSCGRG00000013252	USB1	85	54.386	Cricetulus_griseus_crigri
ENSXMAG00000024687	usb1	85	66.409	ENSCSEG00000013881	usb1	93	68.093	Cynoglossus_semilaevis
ENSXMAG00000024687	usb1	78	72.083	ENSCVAG00000009252	usb1	97	83.260	Cyprinodon_variegatus
ENSXMAG00000024687	usb1	70	58.824	ENSDARG00000003841	usb1	98	54.044	Danio_rerio
ENSXMAG00000024687	usb1	80	47.755	ENSDORG00000001888	Usb1	95	48.810	Dipodomys_ordii
ENSXMAG00000024687	usb1	63	43.458	FBgn0037713	CG16790	81	42.254	Drosophila_melanogaster
ENSXMAG00000024687	usb1	80	41.026	ENSETEG00000019682	USB1	96	42.248	Echinops_telfairi
ENSXMAG00000024687	usb1	87	40.977	ENSEBUG00000005889	usb1	89	42.412	Eptatretus_burgeri
ENSXMAG00000024687	usb1	80	48.980	ENSEASG00005005484	USB1	86	52.193	Equus_asinus_asinus
ENSXMAG00000024687	usb1	80	48.980	ENSECAG00000019493	USB1	78	51.754	Equus_caballus
ENSXMAG00000024687	usb1	51	47.977	ENSEEUG00000000154	USB1	58	49.020	Erinaceus_europaeus
ENSXMAG00000024687	usb1	74	60.079	ENSELUG00000010974	usb1	91	60.079	Esox_lucius
ENSXMAG00000024687	usb1	67	50.877	ENSFCAG00000002693	USB1	97	47.490	Felis_catus
ENSXMAG00000024687	usb1	67	54.585	ENSFALG00000006876	USB1	85	54.585	Ficedula_albicollis
ENSXMAG00000024687	usb1	80	47.347	ENSFDAG00000010052	USB1	84	52.000	Fukomys_damarensis
ENSXMAG00000024687	usb1	80	83.128	ENSFHEG00000012334	usb1	97	83.128	Fundulus_heteroclitus
ENSXMAG00000024687	usb1	66	70.982	ENSGMOG00000004228	usb1	100	70.982	Gadus_morhua
ENSXMAG00000024687	usb1	65	55.779	ENSGALG00000035604	USB1	88	54.222	Gallus_gallus
ENSXMAG00000024687	usb1	81	94.872	ENSGAFG00000021890	usb1	94	95.000	Gambusia_affinis
ENSXMAG00000024687	usb1	81	67.886	ENSGACG00000003257	usb1	92	71.373	Gasterosteus_aculeatus
ENSXMAG00000024687	usb1	80	52.768	ENSGAGG00000022572	USB1	90	53.846	Gopherus_agassizii
ENSXMAG00000024687	usb1	67	52.632	ENSGGOG00000017147	USB1	94	50.000	Gorilla_gorilla
ENSXMAG00000024687	usb1	75	72.727	ENSHBUG00000009823	usb1	89	72.727	Haplochromis_burtoni
ENSXMAG00000024687	usb1	80	48.163	ENSHGLG00000016078	USB1	83	51.754	Heterocephalus_glaber_female
ENSXMAG00000024687	usb1	80	48.163	ENSHGLG00100005562	USB1	83	51.754	Heterocephalus_glaber_male
ENSXMAG00000024687	usb1	64	72.018	ENSHCOG00000015633	usb1	86	72.646	Hippocampus_comes
ENSXMAG00000024687	usb1	80	55.078	ENSIPUG00000008601	usb1	88	55.294	Ictalurus_punctatus
ENSXMAG00000024687	usb1	79	49.794	ENSSTOG00000007548	USB1	97	48.302	Ictidomys_tridecemlineatus
ENSXMAG00000024687	usb1	80	48.980	ENSJJAG00000021859	Usb1	85	52.193	Jaculus_jaculus
ENSXMAG00000024687	usb1	77	75.479	ENSKMAG00000007200	usb1	85	79.253	Kryptolebias_marmoratus
ENSXMAG00000024687	usb1	73	67.600	ENSLBEG00000008452	usb1	78	67.600	Labrus_bergylta
ENSXMAG00000024687	usb1	63	59.162	ENSLACG00000000105	USB1	78	53.540	Latimeria_chalumnae
ENSXMAG00000024687	usb1	78	52.985	ENSLOCG00000000465	usb1	93	48.582	Lepisosteus_oculatus
ENSXMAG00000024687	usb1	80	38.314	ENSLAFG00000002267	USB1	83	41.525	Loxodonta_africana
ENSXMAG00000024687	usb1	67	52.632	ENSMFAG00000003926	USB1	86	52.632	Macaca_fascicularis
ENSXMAG00000024687	usb1	67	52.632	ENSMMUG00000022669	USB1	86	52.632	Macaca_mulatta
ENSXMAG00000024687	usb1	67	52.193	ENSMNEG00000042487	USB1	86	52.193	Macaca_nemestrina
ENSXMAG00000024687	usb1	67	52.632	ENSMLEG00000028756	USB1	86	52.632	Mandrillus_leucophaeus
ENSXMAG00000024687	usb1	81	73.387	ENSMAMG00000015092	usb1	88	77.328	Mastacembelus_armatus
ENSXMAG00000024687	usb1	75	72.727	ENSMZEG00005010008	usb1	89	72.727	Maylandia_zebra
ENSXMAG00000024687	usb1	80	49.799	ENSMAUG00000007832	Usb1	85	53.070	Mesocricetus_auratus
ENSXMAG00000024687	usb1	67	52.632	ENSMICG00000004900	USB1	94	50.000	Microcebus_murinus
ENSXMAG00000024687	usb1	80	51.837	ENSMOCG00000022647	Usb1	85	54.825	Microtus_ochrogaster
ENSXMAG00000024687	usb1	66	75.556	ENSMMOG00000000490	usb1	87	75.556	Mola_mola
ENSXMAG00000024687	usb1	81	48.800	ENSMODG00000014067	USB1	96	50.382	Monodelphis_domestica
ENSXMAG00000024687	usb1	73	73.896	ENSMALG00000005930	usb1	88	73.896	Monopterus_albus
ENSXMAG00000024687	usb1	80	50.204	MGP_CAROLIEiJ_G0031421	Usb1	99	50.442	Mus_caroli
ENSXMAG00000024687	usb1	80	49.796	ENSMUSG00000031792	Usb1	99	50.442	Mus_musculus
ENSXMAG00000024687	usb1	67	53.947	MGP_PahariEiJ_G0023019	Usb1	100	51.695	Mus_pahari
ENSXMAG00000024687	usb1	80	50.204	MGP_SPRETEiJ_G0032540	Usb1	85	53.509	Mus_spretus
ENSXMAG00000024687	usb1	69	50.000	ENSMPUG00000004684	USB1	81	50.862	Mustela_putorius_furo
ENSXMAG00000024687	usb1	67	53.070	ENSMLUG00000007400	USB1	98	52.155	Myotis_lucifugus
ENSXMAG00000024687	usb1	80	50.204	ENSNGAG00000009703	Usb1	84	53.947	Nannospalax_galili
ENSXMAG00000024687	usb1	75	66.008	ENSNBRG00000008747	usb1	100	72.093	Neolamprologus_brichardi
ENSXMAG00000024687	usb1	64	54.315	ENSNLEG00000003340	USB1	91	48.918	Nomascus_leucogenys
ENSXMAG00000024687	usb1	79	49.587	ENSODEG00000016214	USB1	85	53.070	Octodon_degus
ENSXMAG00000024687	usb1	81	70.518	ENSONIG00000011063	usb1	89	73.810	Oreochromis_niloticus
ENSXMAG00000024687	usb1	67	51.961	ENSOANG00000012118	USB1	94	51.556	Ornithorhynchus_anatinus
ENSXMAG00000024687	usb1	81	70.612	ENSORLG00000012479	usb1	88	75.934	Oryzias_latipes
ENSXMAG00000024687	usb1	71	74.689	ENSORLG00020018671	usb1	89	74.689	Oryzias_latipes_hni
ENSXMAG00000024687	usb1	71	75.934	ENSORLG00015009679	usb1	89	75.934	Oryzias_latipes_hsok
ENSXMAG00000024687	usb1	81	70.612	ENSOMEG00000012930	usb1	87	75.519	Oryzias_melastigma
ENSXMAG00000024687	usb1	70	47.907	ENSOGAG00000003273	USB1	94	47.200	Otolemur_garnettii
ENSXMAG00000024687	usb1	73	49.597	ENSOARG00000001107	USB1	95	49.597	Ovis_aries
ENSXMAG00000024687	usb1	67	52.193	ENSPPAG00000042137	USB1	94	49.600	Pan_paniscus
ENSXMAG00000024687	usb1	67	50.439	ENSPPRG00000024797	USB1	97	47.104	Panthera_pardus
ENSXMAG00000024687	usb1	67	50.000	ENSPTIG00000007506	USB1	97	46.718	Panthera_tigris_altaica
ENSXMAG00000024687	usb1	63	53.488	ENSPTRG00000008172	USB1	100	53.488	Pan_troglodytes
ENSXMAG00000024687	usb1	67	52.632	ENSPANG00000025138	USB1	86	52.632	Papio_anubis
ENSXMAG00000024687	usb1	70	63.721	ENSPKIG00000015109	usb1	78	64.224	Paramormyrops_kingsleyae
ENSXMAG00000024687	usb1	66	45.982	ENSPSIG00000004305	USB1	100	45.982	Pelodiscus_sinensis
ENSXMAG00000024687	usb1	66	66.816	ENSPMGG00000017725	usb1	85	66.816	Periophthalmus_magnuspinnatus
ENSXMAG00000024687	usb1	80	49.398	ENSPEMG00000016183	Usb1	83	53.070	Peromyscus_maniculatus_bairdii
ENSXMAG00000024687	usb1	63	54.822	ENSPMAG00000000462	usb1	92	53.394	Petromyzon_marinus
ENSXMAG00000024687	usb1	81	95.604	ENSPFOG00000011130	usb1	94	95.769	Poecilia_formosa
ENSXMAG00000024687	usb1	81	95.238	ENSPLAG00000009820	usb1	94	95.385	Poecilia_latipinna
ENSXMAG00000024687	usb1	81	95.971	ENSPMEG00000006402	usb1	94	96.154	Poecilia_mexicana
ENSXMAG00000024687	usb1	81	94.309	ENSPREG00000001047	usb1	99	94.309	Poecilia_reticulata
ENSXMAG00000024687	usb1	64	50.505	ENSPPYG00000007401	USB1	94	46.835	Pongo_abelii
ENSXMAG00000024687	usb1	67	52.193	ENSPCOG00000022612	USB1	86	52.193	Propithecus_coquereli
ENSXMAG00000024687	usb1	83	46.538	ENSPVAG00000004613	USB1	86	51.111	Pteropus_vampyrus
ENSXMAG00000024687	usb1	81	67.857	ENSPNYG00000022262	usb1	89	72.727	Pundamilia_nyererei
ENSXMAG00000024687	usb1	66	64.000	ENSPNAG00000011736	usb1	76	64.000	Pygocentrus_nattereri
ENSXMAG00000024687	usb1	80	50.204	ENSRNOG00000013216	Usb1	85	53.509	Rattus_norvegicus
ENSXMAG00000024687	usb1	67	49.561	ENSRBIG00000044466	USB1	100	53.488	Rhinopithecus_bieti
ENSXMAG00000024687	usb1	67	52.632	ENSRROG00000029211	USB1	86	52.632	Rhinopithecus_roxellana
ENSXMAG00000024687	usb1	67	52.632	ENSSBOG00000029362	USB1	94	50.000	Saimiri_boliviensis_boliviensis
ENSXMAG00000024687	usb1	64	51.376	ENSSHAG00000006993	USB1	90	51.754	Sarcophilus_harrisii
ENSXMAG00000024687	usb1	66	66.071	ENSSFOG00015023663	usb1	70	66.071	Scleropages_formosus
ENSXMAG00000024687	usb1	81	67.424	ENSSMAG00000015834	usb1	89	70.833	Scophthalmus_maximus
ENSXMAG00000024687	usb1	81	70.204	ENSSDUG00000002949	usb1	83	80.444	Seriola_dumerili
ENSXMAG00000024687	usb1	81	73.092	ENSSLDG00000014174	usb1	90	76.772	Seriola_lalandi_dorsalis
ENSXMAG00000024687	usb1	63	55.349	ENSSPUG00000006741	USB1	100	55.349	Sphenodon_punctatus
ENSXMAG00000024687	usb1	81	71.260	ENSSPAG00000007484	usb1	89	74.902	Stegastes_partitus
ENSXMAG00000024687	usb1	80	49.593	ENSSSCG00000002807	USB1	93	50.400	Sus_scrofa
ENSXMAG00000024687	usb1	61	56.938	ENSTGUG00000004792	USB1	87	55.157	Taeniopygia_guttata
ENSXMAG00000024687	usb1	80	68.313	ENSTRUG00000021069	usb1	93	69.020	Takifugu_rubripes
ENSXMAG00000024687	usb1	80	58.672	ENSTNIG00000000626	usb1	96	59.608	Tetraodon_nigroviridis
ENSXMAG00000024687	usb1	66	38.222	ENSTBEG00000001507	USB1	97	38.222	Tupaia_belangeri
ENSXMAG00000024687	usb1	67	52.632	ENSUAMG00000016823	USB1	84	52.632	Ursus_americanus
ENSXMAG00000024687	usb1	63	53.023	ENSUMAG00000021369	USB1	100	53.023	Ursus_maritimus
ENSXMAG00000024687	usb1	80	46.939	ENSVVUG00000023700	USB1	87	51.542	Vulpes_vulpes
ENSXMAG00000024687	usb1	63	55.399	ENSXETG00000013795	usb1	96	52.209	Xenopus_tropicalis