EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000025971 (Gene tree)
Gene ID: 102218803
Gene Symbol: tnrc6c1
Alias: fj17e06|si:dkey-54k13.1|unm_sa1472|wu:fj17e06
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 36220 bases
Position: chr16:14760739-14796958
Accession: 102218803
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000036900	Ago_hook	PF10427.9	2.6e-06	1	1
ENSXMAP00000032620	Ago_hook	PF10427.9	2.7e-06	1	1
ENSXMAP00000034678	Ago_hook	PF10427.9	2.7e-06	1	1
ENSXMAP00000024834	Ago_hook	PF10427.9	3.9e-06	1	1
ENSXMAP00000036900	RRM_1	PF00076.22	0.00019	1	1
ENSXMAP00000024834	RRM_1	PF00076.22	0.0002	1	1
ENSXMAP00000034678	RRM_1	PF00076.22	0.0002	1	1
ENSXMAP00000032620	RRM_1	PF00076.22	0.00021	1	1
ENSXMAP00000026890	RRM_1	PF00076.22	0.00022	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000028977	-	5332	-	ENSXMAP00000032620	1701 (aa)	-	-
ENSXMAT00000041567	-	5683	XM_023349227	ENSXMAP00000026890	1818 (aa)	XP_023204995	-
ENSXMAT00000032345	-	4992	-	ENSXMAP00000024834	1663 (aa)	-	-
ENSXMAT00000042349	-	5224	-	ENSXMAP00000034678	1695 (aa)	-	-
ENSXMAT00000034596	-	5609	-	ENSXMAP00000036900	1597 (aa)	-	-

Gene Model

Click here to download ENSXMAG00000025971's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000025971's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000025971	tnrc6c1	100	48.840	ENSG00000078687	TNRC6C	100	55.172	Homo_sapiens
ENSXMAG00000025971	tnrc6c1	100	85.723	ENSAPOG00000019749	tnrc6c1	100	85.857	Acanthochromis_polyacanthus
ENSXMAG00000025971	tnrc6c1	99	46.501	ENSAMEG00000013756	TNRC6C	99	48.065	Ailuropoda_melanoleuca
ENSXMAG00000025971	tnrc6c1	100	73.514	ENSACIG00000008075	tnrc6c1	99	76.320	Amphilophus_citrinellus
ENSXMAG00000025971	tnrc6c1	100	85.171	ENSAOCG00000023968	tnrc6c1	100	85.455	Amphiprion_ocellaris
ENSXMAG00000025971	tnrc6c1	100	85.171	ENSAPEG00000009020	tnrc6c1	100	85.455	Amphiprion_percula
ENSXMAG00000025971	tnrc6c1	99	49.974	ENSAPLG00000005456	TNRC6C	99	47.792	Anas_platyrhynchos
ENSXMAG00000025971	tnrc6c1	99	49.948	ENSACAG00000016198	TNRC6C	95	49.172	Anolis_carolinensis
ENSXMAG00000025971	tnrc6c1	100	48.895	ENSANAG00000021554	TNRC6C	100	49.656	Aotus_nancymaae
ENSXMAG00000025971	tnrc6c1	100	72.404	ENSACLG00000000424	tnrc6c1	100	72.950	Astatotilapia_calliptera
ENSXMAG00000025971	tnrc6c1	97	57.384	ENSBTAG00000018658	TNRC6C	100	50.401	Bos_taurus
ENSXMAG00000025971	tnrc6c1	100	48.813	ENSCJAG00000019431	TNRC6C	100	49.456	Callithrix_jacchus
ENSXMAG00000025971	tnrc6c1	99	49.221	ENSCAFG00000005224	TNRC6C	99	46.162	Canis_familiaris
ENSXMAG00000025971	tnrc6c1	99	50.000	ENSCAFG00020006661	TNRC6C	100	49.942	Canis_lupus_dingo
ENSXMAG00000025971	tnrc6c1	94	57.356	ENSCHIG00000026004	TNRC6C	100	49.971	Capra_hircus
ENSXMAG00000025971	tnrc6c1	97	49.522	ENSTSYG00000005403	TNRC6C	100	49.155	Carlito_syrichta
ENSXMAG00000025971	tnrc6c1	99	47.352	ENSCAPG00000007307	TNRC6C	97	45.068	Cavia_aperea
ENSXMAG00000025971	tnrc6c1	99	50.527	ENSCPOG00000000467	TNRC6C	99	49.638	Cavia_porcellus
ENSXMAG00000025971	tnrc6c1	100	48.871	ENSCCAG00000030524	TNRC6C	100	49.685	Cebus_capucinus
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSCATG00000033135	TNRC6C	100	49.828	Cercocebus_atys
ENSXMAG00000025971	tnrc6c1	99	50.980	ENSCLAG00000011139	TNRC6C	99	48.614	Chinchilla_lanigera
ENSXMAG00000025971	tnrc6c1	100	48.022	ENSCSAG00000005167	TNRC6C	96	48.118	Chlorocebus_sabaeus
ENSXMAG00000025971	tnrc6c1	69	62.693	ENSCHOG00000000088	TNRC6C	65	67.227	Choloepus_hoffmanni
ENSXMAG00000025971	tnrc6c1	99	49.709	ENSCPBG00000027960	TNRC6C	100	50.250	Chrysemys_picta_bellii
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSCANG00000041771	TNRC6C	100	49.971	Colobus_angolensis_palliatus
ENSXMAG00000025971	tnrc6c1	99	50.263	ENSCGRG00001022686	Tnrc6c	100	49.371	Cricetulus_griseus_chok1gshd
ENSXMAG00000025971	tnrc6c1	99	50.555	ENSCGRG00000018041	Tnrc6c	100	49.371	Cricetulus_griseus_crigri
ENSXMAG00000025971	tnrc6c1	100	77.632	ENSCSEG00000012744	tnrc6c1	100	75.635	Cynoglossus_semilaevis
ENSXMAG00000025971	tnrc6c1	99	61.237	ENSDARG00000076847	tnrc6c1	100	59.730	Danio_rerio
ENSXMAG00000025971	tnrc6c1	99	49.445	ENSDNOG00000003247	TNRC6C	99	47.418	Dasypus_novemcinctus
ENSXMAG00000025971	tnrc6c1	99	47.151	ENSDORG00000004558	Tnrc6c	100	47.913	Dipodomys_ordii
ENSXMAG00000025971	tnrc6c1	90	54.983	ENSETEG00000005527	TNRC6C	80	59.030	Echinops_telfairi
ENSXMAG00000025971	tnrc6c1	97	47.332	ENSEASG00005004799	TNRC6C	100	50.259	Equus_asinus_asinus
ENSXMAG00000025971	tnrc6c1	99	50.000	ENSECAG00000012486	TNRC6C	97	49.498	Equus_caballus
ENSXMAG00000025971	tnrc6c1	91	55.748	ENSEEUG00000010008	TNRC6C	93	57.605	Erinaceus_europaeus
ENSXMAG00000025971	tnrc6c1	100	48.337	ENSFCAG00000028358	TNRC6C	100	50.000	Felis_catus
ENSXMAG00000025971	tnrc6c1	83	52.778	ENSFALG00000000848	TNRC6C	100	49.307	Ficedula_albicollis
ENSXMAG00000025971	tnrc6c1	100	49.443	ENSFDAG00000010368	TNRC6C	99	49.972	Fukomys_damarensis
ENSXMAG00000025971	tnrc6c1	100	92.750	ENSFHEG00000002936	tnrc6c1	99	92.814	Fundulus_heteroclitus
ENSXMAG00000025971	tnrc6c1	100	48.813	ENSGALG00000001725	TNRC6C	100	51.354	Gallus_gallus
ENSXMAG00000025971	tnrc6c1	100	98.054	ENSGAFG00000019019	tnrc6c1	100	98.054	Gambusia_affinis
ENSXMAG00000025971	tnrc6c1	100	73.390	ENSGACG00000012320	tnrc6c1	99	72.936	Gasterosteus_aculeatus
ENSXMAG00000025971	tnrc6c1	100	51.051	ENSGAGG00000022043	TNRC6C	100	50.648	Gopherus_agassizii
ENSXMAG00000025971	tnrc6c1	100	48.840	ENSGGOG00000011304	TNRC6C	100	50.143	Gorilla_gorilla
ENSXMAG00000025971	tnrc6c1	100	81.234	ENSHBUG00000010846	tnrc6c1	100	81.503	Haplochromis_burtoni
ENSXMAG00000025971	tnrc6c1	99	50.821	ENSHGLG00000004809	TNRC6C	99	47.895	Heterocephalus_glaber_female
ENSXMAG00000025971	tnrc6c1	99	50.449	ENSHGLG00100012597	TNRC6C	99	47.535	Heterocephalus_glaber_male
ENSXMAG00000025971	tnrc6c1	100	61.768	ENSIPUG00000000818	tnrc6c1	99	59.757	Ictalurus_punctatus
ENSXMAG00000025971	tnrc6c1	83	53.984	ENSSTOG00000009101	TNRC6C	99	50.139	Ictidomys_tridecemlineatus
ENSXMAG00000025971	tnrc6c1	99	49.974	ENSJJAG00000017055	Tnrc6c	99	47.114	Jaculus_jaculus
ENSXMAG00000025971	tnrc6c1	100	79.726	ENSKMAG00000021023	tnrc6c1	100	81.527	Kryptolebias_marmoratus
ENSXMAG00000025971	tnrc6c1	100	46.383	ENSLACG00000015283	TNRC6C	99	47.550	Latimeria_chalumnae
ENSXMAG00000025971	tnrc6c1	99	75.762	ENSLOCG00000013377	tnrc6c1	95	75.762	Lepisosteus_oculatus
ENSXMAG00000025971	tnrc6c1	99	49.555	ENSLAFG00000011122	TNRC6C	98	62.017	Loxodonta_africana
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSMFAG00000043943	TNRC6C	100	49.828	Macaca_fascicularis
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSMMUG00000011924	TNRC6C	100	49.828	Macaca_mulatta
ENSXMAG00000025971	tnrc6c1	100	49.034	ENSMNEG00000030405	TNRC6C	100	49.771	Macaca_nemestrina
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSMLEG00000033436	TNRC6C	100	49.828	Mandrillus_leucophaeus
ENSXMAG00000025971	tnrc6c1	100	81.722	ENSMAMG00000023613	tnrc6c1	100	82.598	Mastacembelus_armatus
ENSXMAG00000025971	tnrc6c1	100	81.336	ENSMZEG00005010920	tnrc6c1	100	80.905	Maylandia_zebra
ENSXMAG00000025971	tnrc6c1	93	68.679	ENSMGAG00000003906	TNRC6C	91	67.176	Meleagris_gallopavo
ENSXMAG00000025971	tnrc6c1	97	49.858	ENSMAUG00000021618	Tnrc6c	100	50.286	Mesocricetus_auratus
ENSXMAG00000025971	tnrc6c1	100	49.056	ENSMICG00000003952	TNRC6C	100	50.344	Microcebus_murinus
ENSXMAG00000025971	tnrc6c1	99	50.026	ENSMOCG00000015879	Tnrc6c	99	50.362	Microtus_ochrogaster
ENSXMAG00000025971	tnrc6c1	100	79.654	ENSMMOG00000005203	tnrc6c1	100	79.406	Mola_mola
ENSXMAG00000025971	tnrc6c1	99	50.521	ENSMODG00000001785	TNRC6C	99	47.809	Monodelphis_domestica
ENSXMAG00000025971	tnrc6c1	99	49.477	MGP_CAROLIEiJ_G0017465	Tnrc6c	99	49.610	Mus_caroli
ENSXMAG00000025971	tnrc6c1	99	49.609	ENSMUSG00000025571	Tnrc6c	99	49.610	Mus_musculus
ENSXMAG00000025971	tnrc6c1	99	49.553	MGP_PahariEiJ_G0018593	Tnrc6c	99	50.056	Mus_pahari
ENSXMAG00000025971	tnrc6c1	99	49.452	MGP_SPRETEiJ_G0018309	Tnrc6c	99	49.443	Mus_spretus
ENSXMAG00000025971	tnrc6c1	100	47.769	ENSMPUG00000013348	TNRC6C	98	47.251	Mustela_putorius_furo
ENSXMAG00000025971	tnrc6c1	99	47.878	ENSMLUG00000014431	TNRC6C	98	46.005	Myotis_lucifugus
ENSXMAG00000025971	tnrc6c1	99	50.237	ENSNGAG00000012203	Tnrc6c	99	47.363	Nannospalax_galili
ENSXMAG00000025971	tnrc6c1	100	81.472	ENSNBRG00000005344	tnrc6c1	100	82.021	Neolamprologus_brichardi
ENSXMAG00000025971	tnrc6c1	99	47.572	ENSNLEG00000000047	TNRC6C	96	46.553	Nomascus_leucogenys
ENSXMAG00000025971	tnrc6c1	93	65.620	ENSMEUG00000005104	TNRC6C	96	65.035	Notamacropus_eugenii
ENSXMAG00000025971	tnrc6c1	100	49.638	ENSODEG00000012499	TNRC6C	100	50.345	Octodon_degus
ENSXMAG00000025971	tnrc6c1	100	82.448	ENSONIG00000002210	tnrc6c1	100	82.386	Oreochromis_niloticus
ENSXMAG00000025971	tnrc6c1	70	100.000	ENSOANG00000009758	-	68	100.000	Ornithorhynchus_anatinus
ENSXMAG00000025971	tnrc6c1	82	55.083	ENSOCUG00000006122	TNRC6C	92	42.274	Oryctolagus_cuniculus
ENSXMAG00000025971	tnrc6c1	100	79.042	ENSORLG00000009837	tnrc6c1	100	85.818	Oryzias_latipes
ENSXMAG00000025971	tnrc6c1	100	78.980	ENSORLG00020016510	tnrc6c1	100	79.353	Oryzias_latipes_hni
ENSXMAG00000025971	tnrc6c1	80	75.570	ENSORLG00015000171	tnrc6c1	99	76.012	Oryzias_latipes_hsok
ENSXMAG00000025971	tnrc6c1	100	81.021	ENSOMEG00000000357	tnrc6c1	100	80.469	Oryzias_melastigma
ENSXMAG00000025971	tnrc6c1	97	48.394	ENSOGAG00000007197	TNRC6C	100	48.284	Otolemur_garnettii
ENSXMAG00000025971	tnrc6c1	96	47.001	ENSOARG00000006041	TNRC6C	99	45.857	Ovis_aries
ENSXMAG00000025971	tnrc6c1	100	48.785	ENSPPAG00000027160	TNRC6C	100	49.799	Pan_paniscus
ENSXMAG00000025971	tnrc6c1	100	48.337	ENSPPRG00000018881	TNRC6C	100	49.943	Panthera_pardus
ENSXMAG00000025971	tnrc6c1	99	43.516	ENSPTIG00000008791	TNRC6C	85	54.245	Panthera_tigris_altaica
ENSXMAG00000025971	tnrc6c1	100	48.840	ENSPTRG00000009699	TNRC6C	100	49.857	Pan_troglodytes
ENSXMAG00000025971	tnrc6c1	100	49.170	ENSPANG00000019994	TNRC6C	100	49.914	Papio_anubis
ENSXMAG00000025971	tnrc6c1	100	54.761	ENSPKIG00000005428	tnrc6c1	100	55.319	Paramormyrops_kingsleyae
ENSXMAG00000025971	tnrc6c1	97	50.373	ENSPSIG00000018069	TNRC6C	99	49.442	Pelodiscus_sinensis
ENSXMAG00000025971	tnrc6c1	93	68.710	ENSPMGG00000022911	tnrc6c1	98	80.000	Periophthalmus_magnuspinnatus
ENSXMAG00000025971	tnrc6c1	99	50.288	ENSPEMG00000009785	Tnrc6c	100	48.402	Peromyscus_maniculatus_bairdii
ENSXMAG00000025971	tnrc6c1	54	39.264	ENSPCIG00000017421	-	99	39.681	Phascolarctos_cinereus
ENSXMAG00000025971	tnrc6c1	100	97.688	ENSPFOG00000012560	tnrc6c1	99	97.209	Poecilia_formosa
ENSXMAG00000025971	tnrc6c1	100	97.750	ENSPLAG00000021055	tnrc6c1	100	97.750	Poecilia_latipinna
ENSXMAG00000025971	tnrc6c1	99	48.938	ENSPPYG00000008679	TNRC6C	95	48.349	Pongo_abelii
ENSXMAG00000025971	tnrc6c1	71	66.147	ENSPCAG00000012510	TNRC6C	89	66.743	Procavia_capensis
ENSXMAG00000025971	tnrc6c1	100	49.332	ENSPCOG00000021451	TNRC6C	100	50.545	Propithecus_coquereli
ENSXMAG00000025971	tnrc6c1	74	60.150	ENSPVAG00000002008	TNRC6C	95	66.949	Pteropus_vampyrus
ENSXMAG00000025971	tnrc6c1	100	81.269	ENSPNYG00000014477	tnrc6c1	100	81.943	Pundamilia_nyererei
ENSXMAG00000025971	tnrc6c1	97	49.372	ENSRNOG00000022395	Tnrc6c	97	51.008	Rattus_norvegicus
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSRBIG00000027777	TNRC6C	100	49.885	Rhinopithecus_bieti
ENSXMAG00000025971	tnrc6c1	100	49.089	ENSRROG00000042912	TNRC6C	100	49.885	Rhinopithecus_roxellana
ENSXMAG00000025971	tnrc6c1	99	49.174	ENSSBOG00000023981	TNRC6C	100	48.623	Saimiri_boliviensis_boliviensis
ENSXMAG00000025971	tnrc6c1	53	61.740	ENSSHAG00000018330	-	100	61.489	Sarcophilus_harrisii
ENSXMAG00000025971	tnrc6c1	100	59.577	ENSSFOG00015006475	tnrc6c1	100	57.449	Scleropages_formosus
ENSXMAG00000025971	tnrc6c1	93	64.245	ENSSFOG00015004735	-	99	69.437	Scleropages_formosus
ENSXMAG00000025971	tnrc6c1	100	82.181	ENSSMAG00000012761	tnrc6c1	100	81.807	Scophthalmus_maximus
ENSXMAG00000025971	tnrc6c1	100	84.519	ENSSDUG00000002366	tnrc6c1	98	84.506	Seriola_dumerili
ENSXMAG00000025971	tnrc6c1	100	84.457	ENSSLDG00000025613	tnrc6c1	100	84.395	Seriola_lalandi_dorsalis
ENSXMAG00000025971	tnrc6c1	69	61.317	ENSSARG00000006816	TNRC6C	90	67.227	Sorex_araneus
ENSXMAG00000025971	tnrc6c1	79	86.486	ENSSPUG00000007341	TNRC6C	92	100.000	Sphenodon_punctatus
ENSXMAG00000025971	tnrc6c1	98	85.579	ENSSPAG00000014977	tnrc6c1	98	85.790	Stegastes_partitus
ENSXMAG00000025971	tnrc6c1	94	56.660	ENSSSCG00000034373	TNRC6C	97	50.799	Sus_scrofa
ENSXMAG00000025971	tnrc6c1	83	55.256	ENSTGUG00000007733	TNRC6C	99	50.809	Taeniopygia_guttata
ENSXMAG00000025971	tnrc6c1	100	76.357	ENSTRUG00000011685	tnrc6c1	99	76.720	Takifugu_rubripes
ENSXMAG00000025971	tnrc6c1	100	71.118	ENSTNIG00000005273	tnrc6c1	100	75.963	Tetraodon_nigroviridis
ENSXMAG00000025971	tnrc6c1	67	50.948	ENSTBEG00000005046	TNRC6C	100	50.084	Tupaia_belangeri
ENSXMAG00000025971	tnrc6c1	97	49.800	ENSTTRG00000010828	TNRC6C	99	50.167	Tursiops_truncatus
ENSXMAG00000025971	tnrc6c1	99	48.755	ENSUMAG00000013614	TNRC6C	97	48.338	Ursus_maritimus
ENSXMAG00000025971	tnrc6c1	51	51.522	ENSVPAG00000006765	-	95	53.955	Vicugna_pacos
ENSXMAG00000025971	tnrc6c1	97	50.058	ENSVVUG00000015268	TNRC6C	100	50.403	Vulpes_vulpes
ENSXMAG00000025971	tnrc6c1	97	49.398	ENSXETG00000019470	tnrc6c	97	50.059	Xenopus_tropicalis