EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000026483 (Gene tree)
Gene ID: 102220592
Gene Symbol: -
Alias: -
Full Name: RNA exonuclease 1 homolog
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 12059 bases
Position: chr12:8269676-8281734
Accession: 102220592
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000036036	RNase_T	PF00929.24	4.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000028994	-	3833	XM_014469500	ENSXMAP00000036036	1127 (aa)	XP_014324986	UPI000C6D0578

Gene Model

Click here to download ENSXMAG00000026483's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000026483's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000026483	-	64	75.426	ENSAPOG00000005095	zgc:152968	85	75.426	Acanthochromis_polyacanthus
ENSXMAG00000026483	-	79	77.938	ENSACIG00000002527	zgc:152968	97	77.938	Amphilophus_citrinellus
ENSXMAG00000026483	-	100	54.676	ENSAOCG00000018049	-	98	72.439	Amphiprion_ocellaris
ENSXMAG00000026483	-	95	50.303	ENSAPEG00000012559	zgc:152968	99	50.000	Amphiprion_percula
ENSXMAG00000026483	-	79	79.218	ENSACLG00000020524	-	96	79.218	Astatotilapia_calliptera
ENSXMAG00000026483	-	79	86.173	ENSCVAG00000015400	zgc:152968	99	86.173	Cyprinodon_variegatus
ENSXMAG00000026483	-	82	47.688	ENSDARG00000037002	zgc:152968	71	47.315	Danio_rerio
ENSXMAG00000026483	-	83	48.793	ENSELUG00000014272	zgc:152968	79	48.408	Esox_lucius
ENSXMAG00000026483	-	100	66.440	ENSFHEG00000003641	-	96	76.214	Fundulus_heteroclitus
ENSXMAG00000026483	-	100	92.021	ENSGAFG00000016810	-	100	92.021	Gambusia_affinis
ENSXMAG00000026483	-	97	53.482	ENSHBUG00000007524	-	98	53.396	Haplochromis_burtoni
ENSXMAG00000026483	-	55	61.985	ENSIPUG00000004633	zgc:152968	69	62.287	Ictalurus_punctatus
ENSXMAG00000026483	-	84	67.878	ENSLBEG00000026485	zgc:152968	98	67.878	Labrus_bergylta
ENSXMAG00000026483	-	100	46.795	ENSMAMG00000005920	-	100	46.013	Mastacembelus_armatus
ENSXMAG00000026483	-	79	77.995	ENSMZEG00005013783	-	96	77.995	Maylandia_zebra
ENSXMAG00000026483	-	84	78.102	ENSMMOG00000018072	zgc:152968	99	78.102	Mola_mola
ENSXMAG00000026483	-	84	67.754	ENSMALG00000003536	-	98	67.754	Monopterus_albus
ENSXMAG00000026483	-	100	54.170	ENSONIG00000016897	-	100	54.002	Oreochromis_niloticus
ENSXMAG00000026483	-	81	65.919	ENSORLG00020012504	-	85	65.172	Oryzias_latipes_hni
ENSXMAG00000026483	-	74	68.240	ENSOMEG00000008840	-	83	75.616	Oryzias_melastigma
ENSXMAG00000026483	-	100	89.311	ENSPFOG00000006104	-	99	93.636	Poecilia_formosa
ENSXMAG00000026483	-	100	85.159	ENSPLAG00000005034	-	99	90.670	Poecilia_latipinna
ENSXMAG00000026483	-	100	88.869	ENSPMEG00000018012	-	100	88.869	Poecilia_mexicana
ENSXMAG00000026483	-	100	86.484	ENSPREG00000007481	-	100	86.484	Poecilia_reticulata
ENSXMAG00000026483	-	60	46.465	ENSSFOG00015023869	zgc:152968	61	59.951	Scleropages_formosus
ENSXMAG00000026483	-	100	53.897	ENSSMAG00000008149	-	100	53.897	Scophthalmus_maximus
ENSXMAG00000026483	-	84	80.292	ENSSDUG00000022323	-	95	80.292	Seriola_dumerili
ENSXMAG00000026483	-	60	78.986	ENSSLDG00000018799	zgc:152968	95	78.986	Seriola_lalandi_dorsalis
ENSXMAG00000026483	-	84	73.092	ENSSPAG00000007632	-	94	72.453	Stegastes_partitus
ENSXMAG00000026483	-	100	50.856	ENSTRUG00000025441	zgc:152968	100	50.514	Takifugu_rubripes