EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000026637 (Gene tree)
Gene ID: 102230739
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1 homolog%2C mRNA degradation associated
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 6623 bases
Position: chr12:24388680-24395302
Accession: 102230739
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000029430	LSM	PF01423.22	3.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000035472	-	3404	XM_005808974	ENSXMAP00000029430	133 (aa)	XP_005809031	M4ALZ7

Gene Model

Click here to download ENSXMAG00000026637's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000026637's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000026637	lsm1	100	82.707	ENSG00000175324	LSM1	100	82.707	Homo_sapiens
ENSXMAG00000026637	lsm1	100	95.489	ENSAPOG00000010833	lsm1	100	95.489	Acanthochromis_polyacanthus
ENSXMAG00000026637	lsm1	100	82.707	ENSAMEG00000011141	LSM1	100	82.707	Ailuropoda_melanoleuca
ENSXMAG00000026637	lsm1	58	98.701	ENSACIG00000019593	lsm1	64	98.701	Amphilophus_citrinellus
ENSXMAG00000026637	lsm1	100	95.489	ENSAOCG00000017096	lsm1	100	95.489	Amphiprion_ocellaris
ENSXMAG00000026637	lsm1	100	95.489	ENSAOCG00000017997	-	100	95.489	Amphiprion_ocellaris
ENSXMAG00000026637	lsm1	100	95.489	ENSAPEG00000011669	lsm1	100	95.489	Amphiprion_percula
ENSXMAG00000026637	lsm1	100	96.992	ENSATEG00000022266	lsm1	100	96.992	Anabas_testudineus
ENSXMAG00000026637	lsm1	100	82.707	ENSANAG00000027785	LSM1	100	82.707	Aotus_nancymaae
ENSXMAG00000026637	lsm1	100	96.241	ENSACLG00000011400	lsm1	100	96.241	Astatotilapia_calliptera
ENSXMAG00000026637	lsm1	100	84.211	ENSAMXG00000005441	lsm1	100	84.211	Astyanax_mexicanus
ENSXMAG00000026637	lsm1	100	81.955	ENSBTAG00000001612	LSM1	100	81.955	Bos_taurus
ENSXMAG00000026637	lsm1	70	54.839	WBGene00003076	lsm-1	73	54.839	Caenorhabditis_elegans
ENSXMAG00000026637	lsm1	100	81.955	ENSCJAG00000048015	LSM1	100	81.955	Callithrix_jacchus
ENSXMAG00000026637	lsm1	100	82.707	ENSCAFG00000006113	LSM1	100	82.707	Canis_familiaris
ENSXMAG00000026637	lsm1	100	82.707	ENSCAFG00020001822	LSM1	100	82.707	Canis_lupus_dingo
ENSXMAG00000026637	lsm1	100	82.707	ENSCHIG00000013194	LSM1	100	82.707	Capra_hircus
ENSXMAG00000026637	lsm1	100	82.707	ENSTSYG00000010394	LSM1	100	82.707	Carlito_syrichta
ENSXMAG00000026637	lsm1	100	82.707	ENSCPOG00000032671	LSM1	100	82.707	Cavia_porcellus
ENSXMAG00000026637	lsm1	100	82.707	ENSCCAG00000037171	LSM1	100	82.707	Cebus_capucinus
ENSXMAG00000026637	lsm1	100	82.707	ENSCATG00000020377	LSM1	100	82.707	Cercocebus_atys
ENSXMAG00000026637	lsm1	100	81.203	ENSCLAG00000001137	LSM1	100	81.203	Chinchilla_lanigera
ENSXMAG00000026637	lsm1	100	82.707	ENSCSAG00000015485	LSM1	100	82.707	Chlorocebus_sabaeus
ENSXMAG00000026637	lsm1	100	83.459	ENSCHOG00000006030	LSM1	100	83.459	Choloepus_hoffmanni
ENSXMAG00000026637	lsm1	95	77.953	ENSCPBG00000006569	LSM1	86	77.953	Chrysemys_picta_bellii
ENSXMAG00000026637	lsm1	98	62.879	ENSCING00000013536	-	100	62.879	Ciona_intestinalis
ENSXMAG00000026637	lsm1	100	82.707	ENSCANG00000019173	LSM1	100	82.707	Colobus_angolensis_palliatus
ENSXMAG00000026637	lsm1	100	81.955	ENSCGRG00001024560	-	100	81.955	Cricetulus_griseus_chok1gshd
ENSXMAG00000026637	lsm1	80	71.171	ENSCGRG00001002259	-	97	71.171	Cricetulus_griseus_chok1gshd
ENSXMAG00000026637	lsm1	80	71.171	ENSCGRG00000013603	-	97	71.171	Cricetulus_griseus_crigri
ENSXMAG00000026637	lsm1	100	81.955	ENSCGRG00000006554	-	100	81.955	Cricetulus_griseus_crigri
ENSXMAG00000026637	lsm1	100	96.241	ENSCSEG00000008319	lsm1	92	96.241	Cynoglossus_semilaevis
ENSXMAG00000026637	lsm1	100	97.744	ENSCSEG00000010570	lsm1	92	97.744	Cynoglossus_semilaevis
ENSXMAG00000026637	lsm1	100	98.496	ENSCVAG00000003871	lsm1	100	98.496	Cyprinodon_variegatus
ENSXMAG00000026637	lsm1	100	83.459	ENSDARG00000043177	lsm1	100	83.459	Danio_rerio
ENSXMAG00000026637	lsm1	89	64.706	ENSDNOG00000046620	-	100	64.706	Dasypus_novemcinctus
ENSXMAG00000026637	lsm1	100	81.955	ENSDNOG00000032911	-	100	81.955	Dasypus_novemcinctus
ENSXMAG00000026637	lsm1	99	78.030	ENSDNOG00000030989	-	99	78.030	Dasypus_novemcinctus
ENSXMAG00000026637	lsm1	100	82.707	ENSDNOG00000046387	-	100	82.707	Dasypus_novemcinctus
ENSXMAG00000026637	lsm1	100	82.707	ENSDORG00000028172	Lsm1	100	82.707	Dipodomys_ordii
ENSXMAG00000026637	lsm1	93	58.871	FBgn0261067	LSm1	91	58.871	Drosophila_melanogaster
ENSXMAG00000026637	lsm1	100	81.955	ENSEASG00005016677	LSM1	100	81.955	Equus_asinus_asinus
ENSXMAG00000026637	lsm1	100	81.955	ENSECAG00000010461	LSM1	100	81.955	Equus_caballus
ENSXMAG00000026637	lsm1	72	76.042	ENSEEUG00000015181	LSM1	97	76.042	Erinaceus_europaeus
ENSXMAG00000026637	lsm1	100	76.692	ENSELUG00000023374	lsm1	100	76.692	Esox_lucius
ENSXMAG00000026637	lsm1	100	92.481	ENSELUG00000002322	lsm1	100	92.481	Esox_lucius
ENSXMAG00000026637	lsm1	100	82.707	ENSFCAG00000039335	LSM1	100	82.707	Felis_catus
ENSXMAG00000026637	lsm1	89	83.051	ENSFALG00000006723	LSM1	100	83.051	Ficedula_albicollis
ENSXMAG00000026637	lsm1	100	82.707	ENSFDAG00000007658	LSM1	100	82.707	Fukomys_damarensis
ENSXMAG00000026637	lsm1	100	98.496	ENSFHEG00000009556	lsm1	100	98.496	Fundulus_heteroclitus
ENSXMAG00000026637	lsm1	100	95.489	ENSGMOG00000016651	lsm1	98	95.489	Gadus_morhua
ENSXMAG00000026637	lsm1	100	82.707	ENSGALG00000003245	LSM1	100	82.707	Gallus_gallus
ENSXMAG00000026637	lsm1	100	98.496	ENSGAFG00000011355	lsm1	100	98.496	Gambusia_affinis
ENSXMAG00000026637	lsm1	100	94.737	ENSGACG00000011763	lsm1	98	94.737	Gasterosteus_aculeatus
ENSXMAG00000026637	lsm1	100	84.211	ENSGAGG00000024065	LSM1	100	84.211	Gopherus_agassizii
ENSXMAG00000026637	lsm1	100	82.707	ENSGGOG00000022658	LSM1	100	82.707	Gorilla_gorilla
ENSXMAG00000026637	lsm1	100	96.241	ENSHBUG00000010897	lsm1	100	96.241	Haplochromis_burtoni
ENSXMAG00000026637	lsm1	100	67.669	ENSHGLG00000017574	-	100	67.669	Heterocephalus_glaber_female
ENSXMAG00000026637	lsm1	100	82.707	ENSHGLG00000005711	LSM1	100	82.707	Heterocephalus_glaber_female
ENSXMAG00000026637	lsm1	100	82.707	ENSHGLG00100017660	LSM1	100	82.707	Heterocephalus_glaber_male
ENSXMAG00000026637	lsm1	100	67.669	ENSHGLG00100012152	-	100	67.669	Heterocephalus_glaber_male
ENSXMAG00000026637	lsm1	100	94.737	ENSHCOG00000017233	lsm1	100	94.737	Hippocampus_comes
ENSXMAG00000026637	lsm1	100	83.459	ENSIPUG00000002312	LSM1	100	83.459	Ictalurus_punctatus
ENSXMAG00000026637	lsm1	62	86.747	ENSSTOG00000026870	LSM1	100	86.747	Ictidomys_tridecemlineatus
ENSXMAG00000026637	lsm1	100	81.955	ENSJJAG00000014605	-	100	81.955	Jaculus_jaculus
ENSXMAG00000026637	lsm1	100	96.992	ENSKMAG00000003016	lsm1	100	96.992	Kryptolebias_marmoratus
ENSXMAG00000026637	lsm1	100	96.992	ENSLBEG00000022352	lsm1	100	96.992	Labrus_bergylta
ENSXMAG00000026637	lsm1	90	80.000	ENSLACG00000010947	LSM1	99	80.000	Latimeria_chalumnae
ENSXMAG00000026637	lsm1	100	84.962	ENSLOCG00000015149	lsm1	100	84.962	Lepisosteus_oculatus
ENSXMAG00000026637	lsm1	100	82.707	ENSLAFG00000003534	LSM1	100	82.707	Loxodonta_africana
ENSXMAG00000026637	lsm1	100	82.707	ENSMFAG00000032661	LSM1	100	82.707	Macaca_fascicularis
ENSXMAG00000026637	lsm1	100	82.707	ENSMLEG00000034535	LSM1	100	82.707	Mandrillus_leucophaeus
ENSXMAG00000026637	lsm1	100	97.744	ENSMAMG00000007464	lsm1	100	97.744	Mastacembelus_armatus
ENSXMAG00000026637	lsm1	100	96.241	ENSMZEG00005010321	lsm1	100	96.241	Maylandia_zebra
ENSXMAG00000026637	lsm1	100	82.707	ENSMGAG00000002125	LSM1	100	82.707	Meleagris_gallopavo
ENSXMAG00000026637	lsm1	100	82.707	ENSMICG00000030726	LSM1	100	82.707	Microcebus_murinus
ENSXMAG00000026637	lsm1	100	81.955	ENSMOCG00000022817	Lsm1	100	81.955	Microtus_ochrogaster
ENSXMAG00000026637	lsm1	100	96.241	ENSMMOG00000015466	lsm1	100	96.241	Mola_mola
ENSXMAG00000026637	lsm1	100	83.459	ENSMODG00000010732	-	100	83.459	Monodelphis_domestica
ENSXMAG00000026637	lsm1	58	98.701	ENSMALG00000001478	lsm1	82	98.701	Monopterus_albus
ENSXMAG00000026637	lsm1	100	82.707	MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	Mus_caroli
ENSXMAG00000026637	lsm1	100	82.707	ENSMUSG00000037296	Lsm1	100	82.707	Mus_musculus
ENSXMAG00000026637	lsm1	100	82.707	MGP_PahariEiJ_G0021400	Lsm1	100	82.707	Mus_pahari
ENSXMAG00000026637	lsm1	100	82.707	MGP_SPRETEiJ_G0032049	Lsm1	100	82.707	Mus_spretus
ENSXMAG00000026637	lsm1	100	83.459	ENSMPUG00000009883	LSM1	100	83.459	Mustela_putorius_furo
ENSXMAG00000026637	lsm1	100	82.707	ENSMLUG00000003734	LSM1	100	82.707	Myotis_lucifugus
ENSXMAG00000026637	lsm1	100	81.955	ENSNGAG00000003753	Lsm1	100	81.955	Nannospalax_galili
ENSXMAG00000026637	lsm1	58	98.701	ENSNBRG00000017370	lsm1	66	98.701	Neolamprologus_brichardi
ENSXMAG00000026637	lsm1	100	82.707	ENSNLEG00000029390	LSM1	100	82.707	Nomascus_leucogenys
ENSXMAG00000026637	lsm1	100	83.459	ENSMEUG00000014077	LSM1	100	83.459	Notamacropus_eugenii
ENSXMAG00000026637	lsm1	88	78.632	ENSOPRG00000000333	LSM1	100	78.632	Ochotona_princeps
ENSXMAG00000026637	lsm1	100	82.707	ENSODEG00000004834	LSM1	100	82.707	Octodon_degus
ENSXMAG00000026637	lsm1	100	96.241	ENSONIG00000010782	lsm1	100	96.241	Oreochromis_niloticus
ENSXMAG00000026637	lsm1	100	83.459	ENSOANG00000003256	LSM1	100	83.459	Ornithorhynchus_anatinus
ENSXMAG00000026637	lsm1	100	82.707	ENSOCUG00000015399	LSM1	100	82.707	Oryctolagus_cuniculus
ENSXMAG00000026637	lsm1	100	95.489	ENSORLG00000030288	lsm1	100	95.489	Oryzias_latipes
ENSXMAG00000026637	lsm1	100	95.489	ENSORLG00020003941	lsm1	100	95.489	Oryzias_latipes_hni
ENSXMAG00000026637	lsm1	100	93.985	ENSORLG00020006213	-	86	93.985	Oryzias_latipes_hni
ENSXMAG00000026637	lsm1	100	95.489	ENSORLG00015018350	lsm1	100	95.489	Oryzias_latipes_hsok
ENSXMAG00000026637	lsm1	100	96.992	ENSOMEG00000012454	lsm1	100	96.992	Oryzias_melastigma
ENSXMAG00000026637	lsm1	100	82.707	ENSOGAG00000015161	LSM1	100	82.707	Otolemur_garnettii
ENSXMAG00000026637	lsm1	100	82.707	ENSOARG00000001317	LSM1	100	82.707	Ovis_aries
ENSXMAG00000026637	lsm1	100	82.707	ENSPPAG00000032279	LSM1	100	82.707	Pan_paniscus
ENSXMAG00000026637	lsm1	100	82.707	ENSPPRG00000014172	-	100	82.707	Panthera_pardus
ENSXMAG00000026637	lsm1	100	82.707	ENSPTIG00000010289	LSM1	100	82.707	Panthera_tigris_altaica
ENSXMAG00000026637	lsm1	100	82.707	ENSPTRG00000020169	LSM1	100	82.707	Pan_troglodytes
ENSXMAG00000026637	lsm1	100	82.707	ENSPANG00000008814	LSM1	100	82.707	Papio_anubis
ENSXMAG00000026637	lsm1	100	84.962	ENSPKIG00000001839	lsm1	100	84.962	Paramormyrops_kingsleyae
ENSXMAG00000026637	lsm1	100	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSXMAG00000026637	lsm1	97	79.070	ENSPSIG00000012563	LSM1	98	79.070	Pelodiscus_sinensis
ENSXMAG00000026637	lsm1	58	98.701	ENSPMGG00000022999	lsm1	73	98.701	Periophthalmus_magnuspinnatus
ENSXMAG00000026637	lsm1	85	71.681	ENSPMAG00000002671	lsm1	100	71.681	Petromyzon_marinus
ENSXMAG00000026637	lsm1	100	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSXMAG00000026637	lsm1	100	98.496	ENSPFOG00000016029	lsm1	100	98.496	Poecilia_formosa
ENSXMAG00000026637	lsm1	100	98.496	ENSPLAG00000007879	lsm1	100	98.496	Poecilia_latipinna
ENSXMAG00000026637	lsm1	100	98.496	ENSPMEG00000023550	lsm1	100	98.496	Poecilia_mexicana
ENSXMAG00000026637	lsm1	100	98.496	ENSPREG00000009574	lsm1	100	98.496	Poecilia_reticulata
ENSXMAG00000026637	lsm1	100	82.707	ENSPPYG00000018521	LSM1	100	82.707	Pongo_abelii
ENSXMAG00000026637	lsm1	100	82.707	ENSPCOG00000020901	-	100	82.707	Propithecus_coquereli
ENSXMAG00000026637	lsm1	100	82.707	ENSPVAG00000006016	LSM1	100	82.707	Pteropus_vampyrus
ENSXMAG00000026637	lsm1	100	96.241	ENSPNYG00000018067	lsm1	100	96.241	Pundamilia_nyererei
ENSXMAG00000026637	lsm1	100	83.459	ENSPNAG00000013707	lsm1	100	83.459	Pygocentrus_nattereri
ENSXMAG00000026637	lsm1	100	81.203	ENSRNOG00000015375	Lsm1	100	81.203	Rattus_norvegicus
ENSXMAG00000026637	lsm1	100	82.707	ENSRBIG00000027449	LSM1	100	82.707	Rhinopithecus_bieti
ENSXMAG00000026637	lsm1	100	82.707	ENSRROG00000036074	LSM1	100	82.707	Rhinopithecus_roxellana
ENSXMAG00000026637	lsm1	80	44.248	YJL124C	LSM1	66	44.248	Saccharomyces_cerevisiae
ENSXMAG00000026637	lsm1	100	83.459	ENSSHAG00000017260	LSM1	100	83.459	Sarcophilus_harrisii
ENSXMAG00000026637	lsm1	100	84.211	ENSSFOG00015019528	lsm1	100	84.211	Scleropages_formosus
ENSXMAG00000026637	lsm1	100	96.992	ENSSMAG00000004930	lsm1	100	96.992	Scophthalmus_maximus
ENSXMAG00000026637	lsm1	100	96.992	ENSSDUG00000021823	lsm1	100	96.992	Seriola_dumerili
ENSXMAG00000026637	lsm1	100	96.992	ENSSLDG00000012154	lsm1	100	96.992	Seriola_lalandi_dorsalis
ENSXMAG00000026637	lsm1	100	84.211	ENSSPUG00000014878	LSM1	100	84.211	Sphenodon_punctatus
ENSXMAG00000026637	lsm1	100	96.241	ENSSPAG00000020548	lsm1	100	96.241	Stegastes_partitus
ENSXMAG00000026637	lsm1	100	82.707	ENSSSCG00000039058	LSM1	100	82.707	Sus_scrofa
ENSXMAG00000026637	lsm1	100	84.962	ENSTGUG00000004793	LSM1	100	84.962	Taeniopygia_guttata
ENSXMAG00000026637	lsm1	100	94.737	ENSTRUG00000025239	lsm1	100	94.737	Takifugu_rubripes
ENSXMAG00000026637	lsm1	100	91.729	ENSTNIG00000004055	lsm1	100	91.729	Tetraodon_nigroviridis
ENSXMAG00000026637	lsm1	88	80.342	ENSTBEG00000015884	LSM1	100	80.342	Tupaia_belangeri
ENSXMAG00000026637	lsm1	100	82.707	ENSTTRG00000004482	LSM1	100	82.707	Tursiops_truncatus
ENSXMAG00000026637	lsm1	100	82.707	ENSUAMG00000004103	LSM1	100	82.707	Ursus_americanus
ENSXMAG00000026637	lsm1	100	82.707	ENSUMAG00000009132	LSM1	100	82.707	Ursus_maritimus
ENSXMAG00000026637	lsm1	58	89.610	ENSVPAG00000011593	LSM1	100	89.610	Vicugna_pacos
ENSXMAG00000026637	lsm1	100	82.707	ENSVVUG00000020191	LSM1	100	82.707	Vulpes_vulpes
ENSXMAG00000026637	lsm1	61	62.963	ENSVVUG00000014880	-	86	62.963	Vulpes_vulpes
ENSXMAG00000026637	lsm1	100	78.832	ENSXETG00000009004	lsm1	100	78.832	Xenopus_tropicalis
ENSXMAG00000026637	lsm1	100	100.000	ENSXCOG00000015631	lsm1	100	100.000	Xiphophorus_couchianus