EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000026672 (Gene tree)
Gene ID: 102222501
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 6623 bases
Position: chr9:6657852-6664474
Accession: 102222501
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000032663	LSM	PF01423.22	1.9e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000023679	-	5007	XM_005817332	ENSXMAP00000032663	188 (aa)	XP_005817389	UPI0006D8FC07

Gene Model

Click here to download ENSXMAG00000026672's gene model file

Pathways

Pathway ID	Pathway Name	Source
xma03018	RNA degradation	KEGG
xma03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000026672's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000026672	lsm4	63	80.672	ENSG00000130520	LSM4	99	75.000	Homo_sapiens
ENSXMAG00000026672	lsm4	76	87.417	ENSAPOG00000005643	lsm4	100	87.417	Acanthochromis_polyacanthus
ENSXMAG00000026672	lsm4	76	89.189	ENSAOCG00000006414	lsm4	100	89.189	Amphiprion_ocellaris
ENSXMAG00000026672	lsm4	76	88.591	ENSAPEG00000006238	lsm4	100	88.591	Amphiprion_percula
ENSXMAG00000026672	lsm4	76	88.158	ENSATEG00000016559	lsm4	100	88.158	Anabas_testudineus
ENSXMAG00000026672	lsm4	76	90.476	ENSACLG00000022738	lsm4	100	90.476	Astatotilapia_calliptera
ENSXMAG00000026672	lsm4	76	89.583	ENSAMXG00000016932	lsm4	100	91.667	Astyanax_mexicanus
ENSXMAG00000026672	lsm4	76	83.217	ENSCSEG00000016127	lsm4	100	93.706	Cynoglossus_semilaevis
ENSXMAG00000026672	lsm4	76	96.503	ENSCVAG00000010601	lsm4	100	96.503	Cyprinodon_variegatus
ENSXMAG00000026672	lsm4	68	96.094	ENSCVAG00000021828	lsm4	98	96.094	Cyprinodon_variegatus
ENSXMAG00000026672	lsm4	73	84.722	ENSDARG00000023852	lsm4	99	86.806	Danio_rerio
ENSXMAG00000026672	lsm4	53	81.000	FBgn0032240	CG17768	58	86.667	Drosophila_melanogaster
ENSXMAG00000026672	lsm4	66	92.800	ENSELUG00000012821	lsm4	95	92.800	Esox_lucius
ENSXMAG00000026672	lsm4	76	80.952	ENSGMOG00000007729	lsm4	99	82.432	Gadus_morhua
ENSXMAG00000026672	lsm4	100	96.809	ENSGAFG00000004903	lsm4	100	96.809	Gambusia_affinis
ENSXMAG00000026672	lsm4	76	83.333	ENSGACG00000008140	lsm4	100	87.333	Gasterosteus_aculeatus
ENSXMAG00000026672	lsm4	63	80.672	ENSGGOG00000012914	-	98	79.200	Gorilla_gorilla
ENSXMAG00000026672	lsm4	87	81.287	ENSHBUG00000008858	lsm4	93	81.287	Haplochromis_burtoni
ENSXMAG00000026672	lsm4	76	94.406	ENSHCOG00000008819	lsm4	100	94.406	Hippocampus_comes
ENSXMAG00000026672	lsm4	76	88.889	ENSIPUG00000005368	Lsm4	100	90.972	Ictalurus_punctatus
ENSXMAG00000026672	lsm4	76	93.056	ENSKMAG00000005073	lsm4	100	93.056	Kryptolebias_marmoratus
ENSXMAG00000026672	lsm4	76	88.591	ENSLBEG00000027930	lsm4	100	88.591	Labrus_bergylta
ENSXMAG00000026672	lsm4	54	97.030	ENSLOCG00000002025	lsm4	100	88.194	Lepisosteus_oculatus
ENSXMAG00000026672	lsm4	76	93.007	ENSMAMG00000006190	lsm4	100	93.007	Mastacembelus_armatus
ENSXMAG00000026672	lsm4	76	91.096	ENSMZEG00005016420	lsm4	100	91.096	Maylandia_zebra
ENSXMAG00000026672	lsm4	71	77.206	ENSMGAG00000004976	LSM4	96	82.353	Meleagris_gallopavo
ENSXMAG00000026672	lsm4	53	94.949	ENSMICG00000000222	LSM4	79	82.258	Microcebus_murinus
ENSXMAG00000026672	lsm4	76	91.608	ENSMALG00000018159	lsm4	100	91.608	Monopterus_albus
ENSXMAG00000026672	lsm4	55	93.204	ENSNBRG00000022150	lsm4	80	72.222	Neolamprologus_brichardi
ENSXMAG00000026672	lsm4	73	60.000	ENSODEG00000011712	-	98	60.000	Octodon_degus
ENSXMAG00000026672	lsm4	76	90.476	ENSONIG00000012724	lsm4	100	90.476	Oreochromis_niloticus
ENSXMAG00000026672	lsm4	76	93.056	ENSORLG00000008391	lsm4	100	93.056	Oryzias_latipes
ENSXMAG00000026672	lsm4	76	92.361	ENSORLG00020014829	lsm4	100	92.361	Oryzias_latipes_hni
ENSXMAG00000026672	lsm4	76	91.667	ENSORLG00015010205	lsm4	100	91.667	Oryzias_latipes_hsok
ENSXMAG00000026672	lsm4	76	93.750	ENSOMEG00000003606	lsm4	100	93.750	Oryzias_melastigma
ENSXMAG00000026672	lsm4	52	94.898	ENSOGAG00000027992	LSM4	75	82.114	Otolemur_garnettii
ENSXMAG00000026672	lsm4	63	80.672	ENSPPAG00000044045	-	98	79.200	Pan_paniscus
ENSXMAG00000026672	lsm4	76	88.194	ENSPKIG00000006154	lsm4	100	88.194	Paramormyrops_kingsleyae
ENSXMAG00000026672	lsm4	100	94.681	ENSPFOG00000000570	lsm4	100	94.681	Poecilia_formosa
ENSXMAG00000026672	lsm4	76	96.503	ENSPLAG00000016267	lsm4	100	96.503	Poecilia_latipinna
ENSXMAG00000026672	lsm4	76	97.203	ENSPMEG00000016378	lsm4	100	97.203	Poecilia_mexicana
ENSXMAG00000026672	lsm4	100	93.085	ENSPREG00000011290	lsm4	100	93.085	Poecilia_reticulata
ENSXMAG00000026672	lsm4	53	94.949	ENSPCOG00000019837	LSM4	79	82.258	Propithecus_coquereli
ENSXMAG00000026672	lsm4	76	91.096	ENSPNYG00000016794	lsm4	100	91.096	Pundamilia_nyererei
ENSXMAG00000026672	lsm4	72	90.441	ENSPNAG00000016598	lsm4	100	90.441	Pygocentrus_nattereri
ENSXMAG00000026672	lsm4	76	89.583	ENSSFOG00015021067	lsm4	100	89.583	Scleropages_formosus
ENSXMAG00000026672	lsm4	76	76.000	ENSSMAG00000021020	lsm4	100	88.000	Scophthalmus_maximus
ENSXMAG00000026672	lsm4	76	79.641	ENSSDUG00000009588	lsm4	100	79.641	Seriola_dumerili
ENSXMAG00000026672	lsm4	76	79.167	ENSSLDG00000006827	lsm4	100	79.167	Seriola_lalandi_dorsalis
ENSXMAG00000026672	lsm4	76	87.417	ENSSPAG00000011615	lsm4	100	87.417	Stegastes_partitus
ENSXMAG00000026672	lsm4	76	93.706	ENSTRUG00000021737	lsm4	100	93.706	Takifugu_rubripes
ENSXMAG00000026672	lsm4	76	88.889	ENSTNIG00000010191	lsm4	100	90.972	Tetraodon_nigroviridis
ENSXMAG00000026672	lsm4	52	96.939	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis