EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000027103 (Gene tree)
Gene ID
102232332
Gene Symbol
MSI1
Alias
-
Full Name
musashi RNA binding protein 1
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
28845 bases
Position
chr12:27113104-27141948
Accession
102232332
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000031344RRM_1PF00076.221.5e-3212
ENSXMAP00000031344RRM_1PF00076.221.5e-3222
ENSXMAP00000032158RRM_1PF00076.226.1e-2812
ENSXMAP00000032158RRM_1PF00076.226.1e-2822
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000030147MSI1-202999-ENSXMAP00000032158332 (aa)--
ENSXMAT00000028553MSI1-2014029XM_023343688ENSXMAP00000031344421 (aa)XP_023199456UPI000C6E4E95
Gene Model
Click here to download ENSXMAG00000027103's gene model file
Pathways
Pathway IDPathway NameSource
xma03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000027103's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000027103MSI110073.984ENSG00000135097MSI110084.254Homo_sapiens
ENSXMAG00000027103MSI110085.393ENSAPOG00000023458-10098.281Acanthochromis_polyacanthus
ENSXMAG00000027103MSI110083.626ENSAPOG00000003191MSI110092.857Acanthochromis_polyacanthus
ENSXMAG00000027103MSI18965.565ENSAMEG00000013302MSI110065.289Ailuropoda_melanoleuca
ENSXMAG00000027103MSI18690.210ENSACIG00000017754-7293.564Amphilophus_citrinellus
ENSXMAG00000027103MSI110080.392ENSAOCG00000003804MSI110092.857Amphiprion_ocellaris
ENSXMAG00000027103MSI19087.789ENSAOCG00000009031-9589.024Amphiprion_ocellaris
ENSXMAG00000027103MSI110080.392ENSAPEG00000003245MSI110092.857Amphiprion_percula
ENSXMAG00000027103MSI19793.873ENSAPEG00000006857-10092.199Amphiprion_percula
ENSXMAG00000027103MSI110089.911ENSATEG00000017059MSI110094.085Anabas_testudineus
ENSXMAG00000027103MSI110081.180ENSATEG00000023779-10084.746Anabas_testudineus
ENSXMAG00000027103MSI110074.185ENSACAG00000002762MSI110085.042Anolis_carolinensis
ENSXMAG00000027103MSI110073.984ENSANAG00000027151MSI110084.254Aotus_nancymaae
ENSXMAG00000027103MSI18172.696ENSANAG00000027901-8884.965Aotus_nancymaae
ENSXMAG00000027103MSI110085.915ENSACLG00000000117-10099.388Astatotilapia_calliptera
ENSXMAG00000027103MSI110080.726ENSACLG00000011230MSI110092.877Astatotilapia_calliptera
ENSXMAG00000027103MSI19883.792ENSAMXG00000038960msi18286.592Astyanax_mexicanus
ENSXMAG00000027103MSI110073.984ENSBTAG00000009800MSI110085.924Bos_taurus
ENSXMAG00000027103MSI110073.984ENSCJAG00000008578MSI110084.254Callithrix_jacchus
ENSXMAG00000027103MSI110073.713ENSCAFG00000010283MSI110083.978Canis_familiaris
ENSXMAG00000027103MSI19579.167ENSCAFG00020020585MSI110086.174Canis_lupus_dingo
ENSXMAG00000027103MSI110073.387ENSCHIG00000024304MSI110082.016Capra_hircus
ENSXMAG00000027103MSI19578.659ENSTSYG00000033949MSI19585.321Carlito_syrichta
ENSXMAG00000027103MSI18970.927ENSCAPG00000003919MSI18976.997Cavia_aperea
ENSXMAG00000027103MSI19078.078ENSCPOG00000012361MSI110085.965Cavia_porcellus
ENSXMAG00000027103MSI110073.984ENSCCAG00000035567MSI110084.254Cebus_capucinus
ENSXMAG00000027103MSI110075.766ENSCATG00000030019MSI110084.254Cercocebus_atys
ENSXMAG00000027103MSI19078.078ENSCLAG00000011329MSI110085.965Chinchilla_lanigera
ENSXMAG00000027103MSI17478.486ENSCSAG00000002265MSI19684.116Chlorocebus_sabaeus
ENSXMAG00000027103MSI110077.095ENSCPBG00000011349MSI110087.749Chrysemys_picta_bellii
ENSXMAG00000027103MSI19578.723ENSCANG00000040651MSI110085.366Colobus_angolensis_palliatus
ENSXMAG00000027103MSI110073.984ENSCGRG00001018883Msi110084.254Cricetulus_griseus_chok1gshd
ENSXMAG00000027103MSI19078.614ENSCGRG00000002191Msi17285.410Cricetulus_griseus_crigri
ENSXMAG00000027103MSI19090.000ENSCSEG00000011032MSI110090.000Cynoglossus_semilaevis
ENSXMAG00000027103MSI110079.832ENSCSEG00000005834-10092.000Cynoglossus_semilaevis
ENSXMAG00000027103MSI110089.286ENSCSEG00000008352-10097.414Cynoglossus_semilaevis
ENSXMAG00000027103MSI110091.369ENSCVAG00000009100MSI110099.425Cyprinodon_variegatus
ENSXMAG00000027103MSI17667.281ENSCVAG00000017463-8975.115Cyprinodon_variegatus
ENSXMAG00000027103MSI15454.545ENSCVAG00000017430zgc:1107969466.418Cyprinodon_variegatus
ENSXMAG00000027103MSI19590.909ENSDARG00000010710msi110094.393Danio_rerio
ENSXMAG00000027103MSI16692.558ENSDARG00000102015CABZ01037298.19892.558Danio_rerio
ENSXMAG00000027103MSI19075.549ENSDNOG00000005713MSI19182.595Dasypus_novemcinctus
ENSXMAG00000027103MSI19178.144ENSDORG00000005610Msi19484.731Dipodomys_ordii
ENSXMAG00000027103MSI19575.684ENSETEG00000004756MSI110082.317Echinops_telfairi
ENSXMAG00000027103MSI110078.000ENSEASG00005004736MSI110084.254Equus_asinus_asinus
ENSXMAG00000027103MSI110073.984ENSECAG00000017526MSI110084.254Equus_caballus
ENSXMAG00000027103MSI19681.341ENSELUG00000023219MSI19289.971Esox_lucius
ENSXMAG00000027103MSI19083.387ENSELUG00000023280-10087.156Esox_lucius
ENSXMAG00000027103MSI110073.984ENSFCAG00000011007MSI110084.254Felis_catus
ENSXMAG00000027103MSI19582.724ENSFALG00000007574MSI110090.000Ficedula_albicollis
ENSXMAG00000027103MSI19578.419ENSFDAG00000019586MSI110085.061Fukomys_damarensis
ENSXMAG00000027103MSI110085.241ENSFHEG00000003560-10092.857Fundulus_heteroclitus
ENSXMAG00000027103MSI110097.297ENSFHEG00000022446MSI110099.140Fundulus_heteroclitus
ENSXMAG00000027103MSI110082.535ENSGMOG00000001006MSI19995.115Gadus_morhua
ENSXMAG00000027103MSI110071.429ENSGMOG00000017838-10083.333Gadus_morhua
ENSXMAG00000027103MSI18882.558ENSGALG00000007227MSI19876.215Gallus_gallus
ENSXMAG00000027103MSI110087.651ENSGAFG00000005860-10087.651Gambusia_affinis
ENSXMAG00000027103MSI19083.072ENSGAFG00000021522MSI19492.683Gambusia_affinis
ENSXMAG00000027103MSI110087.537ENSGACG00000012679MSI110096.562Gasterosteus_aculeatus
ENSXMAG00000027103MSI110073.641ENSGACG00000008674-10085.042Gasterosteus_aculeatus
ENSXMAG00000027103MSI110081.416ENSGAGG00000016037MSI110087.749Gopherus_agassizii
ENSXMAG00000027103MSI18979.048ENSGGOG00000010328MSI110085.987Gorilla_gorilla
ENSXMAG00000027103MSI110085.915ENSHBUG00000011841-10098.851Haplochromis_burtoni
ENSXMAG00000027103MSI110080.726ENSHBUG00000021921MSI110092.877Haplochromis_burtoni
ENSXMAG00000027103MSI110073.713ENSHGLG00000012782MSI110083.978Heterocephalus_glaber_female
ENSXMAG00000027103MSI19578.419ENSHGLG00100016848MSI110085.061Heterocephalus_glaber_male
ENSXMAG00000027103MSI110089.222ENSHCOG00000012067-10092.614Hippocampus_comes
ENSXMAG00000027103MSI19087.000ENSHCOG00000012019MSI110087.000Hippocampus_comes
ENSXMAG00000027103MSI19089.632ENSIPUG00000001976msi110091.691Ictalurus_punctatus
ENSXMAG00000027103MSI19579.167ENSSTOG00000009799MSI110086.174Ictidomys_tridecemlineatus
ENSXMAG00000027103MSI110075.000ENSJJAG00000010463Msi110084.254Jaculus_jaculus
ENSXMAG00000027103MSI110067.622ENSJJAG00000010643-10074.425Jaculus_jaculus
ENSXMAG00000027103MSI19088.333ENSKMAG00000019877-10088.333Kryptolebias_marmoratus
ENSXMAG00000027103MSI110084.789ENSKMAG00000011251MSI110097.701Kryptolebias_marmoratus
ENSXMAG00000027103MSI110080.672ENSLBEG00000001375-10092.857Labrus_bergylta
ENSXMAG00000027103MSI110089.614ENSLBEG00000008789MSI110097.708Labrus_bergylta
ENSXMAG00000027103MSI19078.852ENSLACG00000018287MSI110084.548Latimeria_chalumnae
ENSXMAG00000027103MSI15564.957ENSLOCG00000008618zgc:1107967180.000Lepisosteus_oculatus
ENSXMAG00000027103MSI18974.183ENSLAFG00000009412MSI110076.133Loxodonta_africana
ENSXMAG00000027103MSI19078.078ENSMFAG00000001798MSI110085.965Macaca_fascicularis
ENSXMAG00000027103MSI19078.078ENSMMUG00000031527MSI19784.615Macaca_mulatta
ENSXMAG00000027103MSI110078.000ENSMNEG00000040034MSI110084.254Macaca_nemestrina
ENSXMAG00000027103MSI19578.723ENSMLEG00000003921MSI110085.366Mandrillus_leucophaeus
ENSXMAG00000027103MSI110085.070ENSMAMG00000002279MSI110097.989Mastacembelus_armatus
ENSXMAG00000027103MSI110079.832ENSMAMG00000018426-10092.286Mastacembelus_armatus
ENSXMAG00000027103MSI110090.774ENSMZEG00005000340-10098.851Maylandia_zebra
ENSXMAG00000027103MSI110080.726ENSMZEG00005026892MSI110092.877Maylandia_zebra
ENSXMAG00000027103MSI17388.824ENSMGAG00000016518-10094.675Meleagris_gallopavo
ENSXMAG00000027103MSI16585.581ENSMAUG00000016820Msi110089.712Mesocricetus_auratus
ENSXMAG00000027103MSI110074.725ENSMICG00000033181MSI110084.254Microcebus_murinus
ENSXMAG00000027103MSI110073.713ENSMOCG00000002286Msi110083.978Microtus_ochrogaster
ENSXMAG00000027103MSI19087.000ENSMMOG00000010492MSI19987.000Mola_mola
ENSXMAG00000027103MSI110084.036ENSMMOG00000012265-10084.036Mola_mola
ENSXMAG00000027103MSI18954.354ENSMODG00000003189-10058.434Monodelphis_domestica
ENSXMAG00000027103MSI110085.634ENSMALG00000017889MSI110098.563Monopterus_albus
ENSXMAG00000027103MSI19088.333ENSMALG00000001426-10092.966Monopterus_albus
ENSXMAG00000027103MSI110073.713MGP_CAROLIEiJ_G0027626Msi110085.204Mus_caroli
ENSXMAG00000027103MSI110073.713ENSMUSG00000054256Msi19987.963Mus_musculus
ENSXMAG00000027103MSI110076.190MGP_PahariEiJ_G0024206Msi110086.571Mus_pahari
ENSXMAG00000027103MSI110073.713MGP_SPRETEiJ_G0028624Msi110085.204Mus_spretus
ENSXMAG00000027103MSI19579.167ENSMPUG00000003168MSI110086.174Mustela_putorius_furo
ENSXMAG00000027103MSI18970.326ENSMLUG00000010313MSI110076.786Myotis_lucifugus
ENSXMAG00000027103MSI19078.614ENSNGAG00000014508Msi19185.410Nannospalax_galili
ENSXMAG00000027103MSI110090.774ENSNBRG00000000841-10098.851Neolamprologus_brichardi
ENSXMAG00000027103MSI18378.279ENSNBRG00000018012MSI19985.246Neolamprologus_brichardi
ENSXMAG00000027103MSI18969.301ENSNLEG00000015636MSI110075.915Nomascus_leucogenys
ENSXMAG00000027103MSI19558.663ENSMEUG00000015759MSI110065.244Notamacropus_eugenii
ENSXMAG00000027103MSI18571.519ENSOPRG00000016879MSI110078.413Ochotona_princeps
ENSXMAG00000027103MSI19578.723ENSODEG00000006328MSI110085.366Octodon_degus
ENSXMAG00000027103MSI110077.898ENSONIG00000019452-10089.560Oreochromis_niloticus
ENSXMAG00000027103MSI110097.059ENSONIG00000011182MSI110098.851Oreochromis_niloticus
ENSXMAG00000027103MSI19579.167ENSOCUG00000027716MSI110086.174Oryctolagus_cuniculus
ENSXMAG00000027103MSI110088.889ENSORLG00000019978-10098.854Oryzias_latipes
ENSXMAG00000027103MSI110079.552ENSORLG00000029593MSI110091.714Oryzias_latipes
ENSXMAG00000027103MSI110079.552ENSORLG00020008266MSI19988.333Oryzias_latipes_hni
ENSXMAG00000027103MSI110085.955ENSORLG00020001208-7398.596Oryzias_latipes_hni
ENSXMAG00000027103MSI110079.552ENSORLG00015003916MSI110091.714Oryzias_latipes_hsok
ENSXMAG00000027103MSI110090.801ENSORLG00015013672-7398.596Oryzias_latipes_hsok
ENSXMAG00000027103MSI110085.955ENSOMEG00000017536MSI110098.854Oryzias_melastigma
ENSXMAG00000027103MSI110079.832ENSOMEG00000002272-10092.000Oryzias_melastigma
ENSXMAG00000027103MSI19077.381ENSOGAG00000003847MSI19981.868Otolemur_garnettii
ENSXMAG00000027103MSI18976.133ENSOARG00000012097MSI110082.727Ovis_aries
ENSXMAG00000027103MSI19578.723ENSPPAG00000043073MSI110085.366Pan_paniscus
ENSXMAG00000027103MSI110073.984ENSPPRG00000000370MSI110084.254Panthera_pardus
ENSXMAG00000027103MSI19579.167ENSPTIG00000008913MSI110086.174Panthera_tigris_altaica
ENSXMAG00000027103MSI110075.766ENSPTRG00000005531MSI110084.254Pan_troglodytes
ENSXMAG00000027103MSI110073.713ENSPANG00000006335MSI110083.978Papio_anubis
ENSXMAG00000027103MSI110080.845ENSPKIG00000023575-10093.391Paramormyrops_kingsleyae
ENSXMAG00000027103MSI110086.310ENSPKIG00000016497MSI110093.966Paramormyrops_kingsleyae
ENSXMAG00000027103MSI16681.579ENSPSIG00000009621-10081.579Pelodiscus_sinensis
ENSXMAG00000027103MSI19078.370ENSPSIG00000011608-9386.585Pelodiscus_sinensis
ENSXMAG00000027103MSI19069.782ENSPMGG00000007743-9869.054Periophthalmus_magnuspinnatus
ENSXMAG00000027103MSI18694.774ENSPMGG00000000514MSI19794.774Periophthalmus_magnuspinnatus
ENSXMAG00000027103MSI19575.504ENSPEMG00000010491Msi19583.976Peromyscus_maniculatus_bairdii
ENSXMAG00000027103MSI110080.112ENSPFOG00000008319-8692.286Poecilia_formosa
ENSXMAG00000027103MSI110086.517ENSPFOG00000013113MSI110099.427Poecilia_formosa
ENSXMAG00000027103MSI110086.517ENSPLAG00000014025-10099.427Poecilia_latipinna
ENSXMAG00000027103MSI110080.112ENSPLAG00000012431-9792.286Poecilia_latipinna
ENSXMAG00000027103MSI110091.395ENSPMEG00000012796MSI110099.427Poecilia_mexicana
ENSXMAG00000027103MSI110079.552ENSPMEG00000007025-8691.714Poecilia_mexicana
ENSXMAG00000027103MSI15894.059ENSPREG00000014574-10094.059Poecilia_reticulata
ENSXMAG00000027103MSI19090.268ENSPREG00000021416-9489.735Poecilia_reticulata
ENSXMAG00000027103MSI110073.984ENSPPYG00000005027MSI110083.425Pongo_abelii
ENSXMAG00000027103MSI17580.829ENSPCAG00000002300MSI17289.848Procavia_capensis
ENSXMAG00000027103MSI110074.725ENSPCOG00000017341MSI110084.254Propithecus_coquereli
ENSXMAG00000027103MSI19563.664ENSPVAG00000002225MSI110069.817Pteropus_vampyrus
ENSXMAG00000027103MSI110085.915ENSPNYG00000002529-10098.851Pundamilia_nyererei
ENSXMAG00000027103MSI110080.726ENSPNYG00000004379MSI110092.877Pundamilia_nyererei
ENSXMAG00000027103MSI110084.384ENSPNAG00000019337msi110092.264Pygocentrus_nattereri
ENSXMAG00000027103MSI19578.846ENSRNOG00000001156Msi110085.852Rattus_norvegicus
ENSXMAG00000027103MSI19579.167ENSRBIG00000036889MSI110086.174Rhinopithecus_bieti
ENSXMAG00000027103MSI18978.788ENSRROG00000041076MSI19385.152Rhinopithecus_roxellana
ENSXMAG00000027103MSI19078.078ENSSBOG00000030259MSI19985.965Saimiri_boliviensis_boliviensis
ENSXMAG00000027103MSI18969.055ENSSHAG00000006834MSI110076.144Sarcophilus_harrisii
ENSXMAG00000027103MSI19285.855ENSSFOG00015014964-9594.817Scleropages_formosus
ENSXMAG00000027103MSI19089.369ENSSFOG00015005350MSI19693.656Scleropages_formosus
ENSXMAG00000027103MSI18982.707ENSSMAG00000009156-7392.079Scophthalmus_maximus
ENSXMAG00000027103MSI19094.352ENSSMAG00000018824MSI19894.352Scophthalmus_maximus
ENSXMAG00000027103MSI110081.503ENSSDUG00000022697-10093.143Seriola_dumerili
ENSXMAG00000027103MSI110085.393ENSSDUG00000001027MSI110098.281Seriola_dumerili
ENSXMAG00000027103MSI110081.503ENSSLDG00000018706-10081.503Seriola_lalandi_dorsalis
ENSXMAG00000027103MSI110090.208ENSSLDG00000016832MSI110098.281Seriola_lalandi_dorsalis
ENSXMAG00000027103MSI110076.816ENSSPUG00000015741MSI110087.464Sphenodon_punctatus
ENSXMAG00000027103MSI19089.369ENSSPAG00000013098-10093.598Stegastes_partitus
ENSXMAG00000027103MSI15879.503ENSSPAG00000015573zgc:1107968285.625Stegastes_partitus
ENSXMAG00000027103MSI15888.482ENSSPAG00000014085-10088.482Stegastes_partitus
ENSXMAG00000027103MSI110077.714ENSSSCG00000029365MSI110085.852Sus_scrofa
ENSXMAG00000027103MSI19079.154ENSTGUG00000009534MSI110087.059Taeniopygia_guttata
ENSXMAG00000027103MSI19082.886ENSTRUG00000015636-7982.886Takifugu_rubripes
ENSXMAG00000027103MSI15574.545ENSTRUG00000021586-9990.722Takifugu_rubripes
ENSXMAG00000027103MSI17489.302ENSTRUG00000016249MSI110087.352Takifugu_rubripes
ENSXMAG00000027103MSI110081.285ENSTNIG00000011469MSI110093.732Tetraodon_nigroviridis
ENSXMAG00000027103MSI19958.876ENSTNIG00000019814-9962.751Tetraodon_nigroviridis
ENSXMAG00000027103MSI19470.000ENSTBEG00000007182MSI110075.824Tupaia_belangeri
ENSXMAG00000027103MSI16389.474ENSTTRG00000005663MSI17889.474Tursiops_truncatus
ENSXMAG00000027103MSI17781.651ENSUAMG00000015514MSI19488.426Ursus_americanus
ENSXMAG00000027103MSI18980.268ENSUMAG00000006176MSI18882.410Ursus_maritimus
ENSXMAG00000027103MSI19079.817ENSVVUG00000020993MSI110084.685Vulpes_vulpes
ENSXMAG00000027103MSI110075.493ENSXETG00000012216msi110086.207Xenopus_tropicalis
ENSXMAG00000027103MSI19079.470ENSXCOG00000017605MSI18979.470Xiphophorus_couchianus
ENSXMAG00000027103MSI110079.832ENSXMAG00000018237-10092.000Xiphophorus_maculatus

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