EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000027291 (Gene tree)
Gene ID
102227387
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Minus strand
Length
20032 bases
Position
chr19:1727913-1747944
Accession
102227387
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000041864CPSF73-100_CPF11718.82.2e-5411
ENSXMAP00000031167CPSF73-100_CPF11718.84.7e-5411
ENSXMAP00000041864Beta-CaspPF10996.88e-3411
ENSXMAP00000031167Beta-CaspPF10996.82.6e-3311
ENSXMAP00000041864Lactamase_BPF00753.271.1e-1811
ENSXMAP00000031167Lactamase_BPF00753.271.2e-1811
ENSXMAP00000041864RMMBLPF07521.122.4e-2111
ENSXMAP00000031167RMMBLPF07521.122.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000032626CPSF3 (1 of many)-2025802XM_023352704ENSXMAP00000041864690 (aa)XP_023208472UPI000C6DE002
ENSXMAT00000042559CPSF3 (1 of many)-2015943-ENSXMAP00000031167737 (aa)--
Gene Model
Click here to download ENSXMAG00000027291's gene model file
Pathways
Pathway IDPathway NameSource
xma03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000027291's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000027291CPSF39887.923ENSG00000119203CPSF310099.265Homo_sapiens
ENSXMAG00000027291CPSF37597.481ENSAPOG00000012241CPSF39297.481Acanthochromis_polyacanthus
ENSXMAG00000027291CPSF310088.551ENSAPOG00000022087cpsf310088.551Acanthochromis_polyacanthus
ENSXMAG00000027291CPSF39888.365ENSAMEG00000008493CPSF39988.365Ailuropoda_melanoleuca
ENSXMAG00000027291CPSF39193.344ENSACIG00000023663CPSF310086.541Amphilophus_citrinellus
ENSXMAG00000027291CPSF39184.603ENSACIG00000009846cpsf310078.726Amphilophus_citrinellus
ENSXMAG00000027291CPSF310095.652ENSAOCG00000010077CPSF310095.652Amphiprion_ocellaris
ENSXMAG00000027291CPSF310088.406ENSAOCG00000022056cpsf310090.127Amphiprion_ocellaris
ENSXMAG00000027291CPSF310088.551ENSAPEG00000019526cpsf39989.802Amphiprion_percula
ENSXMAG00000027291CPSF310095.652ENSAPEG00000021167CPSF310095.652Amphiprion_percula
ENSXMAG00000027291CPSF310087.681ENSATEG00000014525CPSF310087.681Anabas_testudineus
ENSXMAG00000027291CPSF39988.081ENSATEG00000003959cpsf39988.081Anabas_testudineus
ENSXMAG00000027291CPSF39787.910ENSAPLG00000006941CPSF39887.910Anas_platyrhynchos
ENSXMAG00000027291CPSF39285.243ENSACAG00000001759CPSF39985.243Anolis_carolinensis
ENSXMAG00000027291CPSF39882.474ENSANAG00000031254CPSF39982.883Aotus_nancymaae
ENSXMAG00000027291CPSF39193.819ENSACLG00000018846CPSF310086.831Astatotilapia_calliptera
ENSXMAG00000027291CPSF39788.438ENSACLG00000014484cpsf39988.438Astatotilapia_calliptera
ENSXMAG00000027291CPSF310088.986ENSAMXG00000004786cpsf310088.986Astyanax_mexicanus
ENSXMAG00000027291CPSF39888.218ENSBTAG00000019735CPSF39988.218Bos_taurus
ENSXMAG00000027291CPSF39058.044WBGene00013460cpsf-38958.044Caenorhabditis_elegans
ENSXMAG00000027291CPSF39887.923ENSCJAG00000006276CPSF39987.923Callithrix_jacchus
ENSXMAG00000027291CPSF39888.365ENSCAFG00000003375CPSF39588.365Canis_familiaris
ENSXMAG00000027291CPSF38990.747ENSCAFG00020026799CPSF39990.747Canis_lupus_dingo
ENSXMAG00000027291CPSF39888.218ENSCHIG00000013973CPSF39988.218Capra_hircus
ENSXMAG00000027291CPSF39887.923ENSTSYG00000002967CPSF39987.923Carlito_syrichta
ENSXMAG00000027291CPSF39687.820ENSCAPG00000013851CPSF39987.820Cavia_aperea
ENSXMAG00000027291CPSF39887.923ENSCPOG00000011299CPSF39987.923Cavia_porcellus
ENSXMAG00000027291CPSF39887.776ENSCCAG00000036730CPSF39987.776Cebus_capucinus
ENSXMAG00000027291CPSF39886.156ENSCATG00000014770CPSF39993.253Cercocebus_atys
ENSXMAG00000027291CPSF39887.923ENSCLAG00000002727CPSF39987.923Chinchilla_lanigera
ENSXMAG00000027291CPSF38597.735ENSCSAG00000007125CPSF39997.735Chlorocebus_sabaeus
ENSXMAG00000027291CPSF385100.000ENSCHOG00000000180CPSF37997.610Choloepus_hoffmanni
ENSXMAG00000027291CPSF39987.808ENSCPBG00000014074CPSF39987.808Chrysemys_picta_bellii
ENSXMAG00000027291CPSF39868.182ENSCING00000007214-9768.182Ciona_intestinalis
ENSXMAG00000027291CPSF39878.184ENSCANG00000034435CPSF39978.184Colobus_angolensis_palliatus
ENSXMAG00000027291CPSF39888.071ENSCGRG00001013134Cpsf39988.071Cricetulus_griseus_chok1gshd
ENSXMAG00000027291CPSF39888.071ENSCGRG00000018319Cpsf39988.071Cricetulus_griseus_crigri
ENSXMAG00000027291CPSF310091.751ENSCSEG00000002021CPSF310092.272Cynoglossus_semilaevis
ENSXMAG00000027291CPSF310096.522ENSCVAG00000015067CPSF310096.522Cyprinodon_variegatus
ENSXMAG00000027291CPSF310089.855ENSDARG00000027649cpsf310089.855Danio_rerio
ENSXMAG00000027291CPSF39887.059ENSDNOG00000008940CPSF39587.059Dasypus_novemcinctus
ENSXMAG00000027291CPSF39489.043ENSDORG00000014263Cpsf39989.043Dipodomys_ordii
ENSXMAG00000027291CPSF39965.893FBgn0261065Cpsf739965.893Drosophila_melanogaster
ENSXMAG00000027291CPSF39477.315ENSETEG00000003893CPSF39977.315Echinops_telfairi
ENSXMAG00000027291CPSF39976.164ENSEBUG00000009018cpsf39976.512Eptatretus_burgeri
ENSXMAG00000027291CPSF39888.365ENSEASG00005003970CPSF39988.365Equus_asinus_asinus
ENSXMAG00000027291CPSF39888.365ENSECAG00000019911CPSF39692.905Equus_caballus
ENSXMAG00000027291CPSF39872.754ENSEEUG00000015422CPSF39283.978Erinaceus_europaeus
ENSXMAG00000027291CPSF39990.856ENSELUG00000013775cpsf39990.856Esox_lucius
ENSXMAG00000027291CPSF39888.218ENSFCAG00000007852CPSF39988.218Felis_catus
ENSXMAG00000027291CPSF39387.752ENSFALG00000006572CPSF39987.752Ficedula_albicollis
ENSXMAG00000027291CPSF39887.187ENSFDAG00000006317CPSF39987.187Fukomys_damarensis
ENSXMAG00000027291CPSF310087.246ENSFHEG00000014774cpsf310087.246Fundulus_heteroclitus
ENSXMAG00000027291CPSF35980.244ENSFHEG00000012186CPSF399100.000Fundulus_heteroclitus
ENSXMAG00000027291CPSF310088.696ENSGMOG00000003157cpsf310088.696Gadus_morhua
ENSXMAG00000027291CPSF39987.482ENSGALG00000016424CPSF39987.482Gallus_gallus
ENSXMAG00000027291CPSF39185.533ENSGAFG00000019449cpsf310079.565Gambusia_affinis
ENSXMAG00000027291CPSF310099.565ENSGAFG00000008016CPSF310099.565Gambusia_affinis
ENSXMAG00000027291CPSF36883.940ENSGAGG00000025583CPSF39383.940Gopherus_agassizii
ENSXMAG00000027291CPSF39885.735ENSGGOG00000001757CPSF39198.065Gorilla_gorilla
ENSXMAG00000027291CPSF310088.261ENSHBUG00000001188cpsf310088.261Haplochromis_burtoni
ENSXMAG00000027291CPSF35988.395ENSHBUG00000014332CPSF310088.395Haplochromis_burtoni
ENSXMAG00000027291CPSF39887.776ENSHGLG00000000666CPSF39887.776Heterocephalus_glaber_female
ENSXMAG00000027291CPSF39887.776ENSHGLG00100007765CPSF39887.776Heterocephalus_glaber_male
ENSXMAG00000027291CPSF39993.314ENSHCOG00000015957CPSF39993.314Hippocampus_comes
ENSXMAG00000027291CPSF39987.791ENSHCOG00000007251cpsf39987.791Hippocampus_comes
ENSXMAG00000027291CPSF310088.116ENSIPUG00000023488cpsf310088.116Ictalurus_punctatus
ENSXMAG00000027291CPSF39887.923ENSSTOG00000004476CPSF39987.923Ictidomys_tridecemlineatus
ENSXMAG00000027291CPSF39887.482ENSJJAG00000023415Cpsf39987.482Jaculus_jaculus
ENSXMAG00000027291CPSF310086.957ENSKMAG00000002806cpsf310086.957Kryptolebias_marmoratus
ENSXMAG00000027291CPSF310095.507ENSKMAG00000007317CPSF310095.507Kryptolebias_marmoratus
ENSXMAG00000027291CPSF35482.527ENSLBEG00000015018-9982.527Labrus_bergylta
ENSXMAG00000027291CPSF39981.541ENSLBEG00000020569cpsf39681.541Labrus_bergylta
ENSXMAG00000027291CPSF39595.890ENSLBEG00000013492CPSF39995.890Labrus_bergylta
ENSXMAG00000027291CPSF38797.059ENSLACG00000008308CPSF310097.059Latimeria_chalumnae
ENSXMAG00000027291CPSF310090.188ENSLOCG00000016823cpsf310090.188Lepisosteus_oculatus
ENSXMAG00000027291CPSF39887.021ENSLAFG00000009467CPSF39987.021Loxodonta_africana
ENSXMAG00000027291CPSF39887.776ENSMFAG00000001339CPSF39495.010Macaca_fascicularis
ENSXMAG00000027291CPSF39387.287ENSMMUG00000018038CPSF39295.208Macaca_mulatta
ENSXMAG00000027291CPSF39097.600ENSMNEG00000039447CPSF39997.600Macaca_nemestrina
ENSXMAG00000027291CPSF39887.923ENSMLEG00000026825CPSF39297.854Mandrillus_leucophaeus
ENSXMAG00000027291CPSF39192.563ENSMAMG00000008835CPSF310085.983Mastacembelus_armatus
ENSXMAG00000027291CPSF310087.101ENSMAMG00000003076cpsf310087.101Mastacembelus_armatus
ENSXMAG00000027291CPSF310088.261ENSMZEG00005014358cpsf310088.261Maylandia_zebra
ENSXMAG00000027291CPSF310095.072ENSMZEG00005006258CPSF310095.072Maylandia_zebra
ENSXMAG00000027291CPSF39687.820ENSMGAG00000013995CPSF39987.820Meleagris_gallopavo
ENSXMAG00000027291CPSF35479.144ENSMAUG00000000166Cpsf39979.144Mesocricetus_auratus
ENSXMAG00000027291CPSF39883.038ENSMICG00000002363CPSF39983.038Microcebus_murinus
ENSXMAG00000027291CPSF39884.683ENSMOCG00000020067Cpsf39984.683Microtus_ochrogaster
ENSXMAG00000027291CPSF38071.726ENSMMOG00000011923CPSF38578.571Mola_mola
ENSXMAG00000027291CPSF39383.256ENSMMOG00000018212CPSF39883.256Mola_mola
ENSXMAG00000027291CPSF39886.735ENSMODG00000014703CPSF39986.735Monodelphis_domestica
ENSXMAG00000027291CPSF39290.767ENSMALG00000011474CPSF39990.767Monopterus_albus
ENSXMAG00000027291CPSF310088.406ENSMALG00000016416cpsf310088.406Monopterus_albus
ENSXMAG00000027291CPSF39888.513MGP_CAROLIEiJ_G0017640Cpsf39988.513Mus_caroli
ENSXMAG00000027291CPSF39888.513ENSMUSG00000054309Cpsf39697.881Mus_musculus
ENSXMAG00000027291CPSF39888.365MGP_PahariEiJ_G0029397Cpsf39988.365Mus_pahari
ENSXMAG00000027291CPSF39888.513MGP_SPRETEiJ_G0018481Cpsf39988.513Mus_spretus
ENSXMAG00000027291CPSF39888.382ENSMPUG00000013213CPSF39988.382Mustela_putorius_furo
ENSXMAG00000027291CPSF39888.088ENSMLUG00000010636CPSF39988.088Myotis_lucifugus
ENSXMAG00000027291CPSF39887.923ENSNGAG00000019836Cpsf39987.923Nannospalax_galili
ENSXMAG00000027291CPSF39193.819ENSNBRG00000010525CPSF310086.831Neolamprologus_brichardi
ENSXMAG00000027291CPSF310087.971ENSNBRG00000004770cpsf310087.971Neolamprologus_brichardi
ENSXMAG00000027291CPSF39887.776ENSNLEG00000013359CPSF39197.854Nomascus_leucogenys
ENSXMAG00000027291CPSF39857.437ENSMEUG00000013117-9957.437Notamacropus_eugenii
ENSXMAG00000027291CPSF39879.265ENSOPRG00000008902CPSF39979.265Ochotona_princeps
ENSXMAG00000027291CPSF39887.923ENSODEG00000003129CPSF39987.923Octodon_degus
ENSXMAG00000027291CPSF310088.406ENSONIG00000018812cpsf310088.406Oreochromis_niloticus
ENSXMAG00000027291CPSF38186.121ENSOANG00000008577CPSF39986.121Ornithorhynchus_anatinus
ENSXMAG00000027291CPSF39888.071ENSOCUG00000003728CPSF39988.071Oryctolagus_cuniculus
ENSXMAG00000027291CPSF310087.681ENSORLG00000018854cpsf310087.681Oryzias_latipes
ENSXMAG00000027291CPSF310087.536ENSORLG00020013331cpsf310087.536Oryzias_latipes_hni
ENSXMAG00000027291CPSF310087.681ENSORLG00015011017cpsf310087.681Oryzias_latipes_hsok
ENSXMAG00000027291CPSF310087.826ENSOMEG00000010647cpsf39687.826Oryzias_melastigma
ENSXMAG00000027291CPSF39877.761ENSOGAG00000001680CPSF39977.761Otolemur_garnettii
ENSXMAG00000027291CPSF39888.218ENSOARG00000015073CPSF39988.218Ovis_aries
ENSXMAG00000027291CPSF39887.923ENSPPAG00000042457CPSF39198.065Pan_paniscus
ENSXMAG00000027291CPSF39888.218ENSPPRG00000016790CPSF39988.218Panthera_pardus
ENSXMAG00000027291CPSF39888.348ENSPTIG00000003920CPSF39988.348Panthera_tigris_altaica
ENSXMAG00000027291CPSF39887.923ENSPTRG00000011638CPSF39198.065Pan_troglodytes
ENSXMAG00000027291CPSF39887.776ENSPANG00000016798CPSF39495.010Papio_anubis
ENSXMAG00000027291CPSF310091.304ENSPKIG00000023646cpsf310091.304Paramormyrops_kingsleyae
ENSXMAG00000027291CPSF39887.206ENSPSIG00000016144CPSF39987.206Pelodiscus_sinensis
ENSXMAG00000027291CPSF35988.889ENSPMGG00000015311CPSF310088.889Periophthalmus_magnuspinnatus
ENSXMAG00000027291CPSF38288.183ENSPMGG00000006141-9981.051Periophthalmus_magnuspinnatus
ENSXMAG00000027291CPSF39888.513ENSPEMG00000017668Cpsf39988.513Peromyscus_maniculatus_bairdii
ENSXMAG00000027291CPSF37989.908ENSPMAG00000004841cpsf310089.908Petromyzon_marinus
ENSXMAG00000027291CPSF39688.120ENSPCIG00000009823CPSF39898.000Phascolarctos_cinereus
ENSXMAG00000027291CPSF310087.391ENSPFOG00000015922cpsf310087.391Poecilia_formosa
ENSXMAG00000027291CPSF310099.130ENSPFOG00000010418-10099.130Poecilia_formosa
ENSXMAG00000027291CPSF35998.765ENSPLAG00000021300-10098.765Poecilia_latipinna
ENSXMAG00000027291CPSF310087.391ENSPLAG00000000882cpsf310087.391Poecilia_latipinna
ENSXMAG00000027291CPSF310087.536ENSPMEG00000018309cpsf310087.536Poecilia_mexicana
ENSXMAG00000027291CPSF310090.725ENSPREG00000004482CPSF310090.725Poecilia_reticulata
ENSXMAG00000027291CPSF39185.374ENSPREG00000014875cpsf310079.420Poecilia_reticulata
ENSXMAG00000027291CPSF39883.652ENSPPYG00000012666CPSF39983.652Pongo_abelii
ENSXMAG00000027291CPSF37282.320ENSPCAG00000015042CPSF38182.320Procavia_capensis
ENSXMAG00000027291CPSF38689.964ENSPCOG00000023016CPSF39789.964Propithecus_coquereli
ENSXMAG00000027291CPSF39888.235ENSPVAG00000005324CPSF39988.235Pteropus_vampyrus
ENSXMAG00000027291CPSF310088.261ENSPNYG00000004405cpsf310088.261Pundamilia_nyererei
ENSXMAG00000027291CPSF37896.125ENSPNYG00000021047CPSF39187.874Pundamilia_nyererei
ENSXMAG00000027291CPSF310088.986ENSPNAG00000023060cpsf310088.986Pygocentrus_nattereri
ENSXMAG00000027291CPSF39988.253ENSRNOG00000052418Cpsf39988.253Rattus_norvegicus
ENSXMAG00000027291CPSF39882.916ENSRBIG00000041615CPSF39983.876Rhinopithecus_bieti
ENSXMAG00000027291CPSF39887.923ENSRROG00000033792CPSF39987.923Rhinopithecus_roxellana
ENSXMAG00000027291CPSF38443.636YLR277CYSH18543.636Saccharomyces_cerevisiae
ENSXMAG00000027291CPSF39684.305ENSSBOG00000027263CPSF39784.305Saimiri_boliviensis_boliviensis
ENSXMAG00000027291CPSF39888.071ENSSHAG00000007024CPSF39988.071Sarcophilus_harrisii
ENSXMAG00000027291CPSF310090.725ENSSFOG00015002108cpsf310090.725Scleropages_formosus
ENSXMAG00000027291CPSF39593.455ENSSMAG00000020534CPSF39793.455Scophthalmus_maximus
ENSXMAG00000027291CPSF310094.928ENSSDUG00000018498CPSF310094.928Seriola_dumerili
ENSXMAG00000027291CPSF310088.406ENSSDUG00000002828cpsf39788.406Seriola_dumerili
ENSXMAG00000027291CPSF310088.551ENSSLDG00000008469cpsf39789.507Seriola_lalandi_dorsalis
ENSXMAG00000027291CPSF310094.928ENSSLDG00000005234CPSF310094.928Seriola_lalandi_dorsalis
ENSXMAG00000027291CPSF38984.181ENSSARG00000005186CPSF38984.181Sorex_araneus
ENSXMAG00000027291CPSF39686.099ENSSPUG00000015525CPSF39786.099Sphenodon_punctatus
ENSXMAG00000027291CPSF310095.362ENSSPAG00000002906CPSF310095.362Stegastes_partitus
ENSXMAG00000027291CPSF310088.986ENSSPAG00000018579cpsf310088.986Stegastes_partitus
ENSXMAG00000027291CPSF39888.365ENSSSCG00000020799CPSF39988.365Sus_scrofa
ENSXMAG00000027291CPSF39987.683ENSTGUG00000013016CPSF39987.683Taeniopygia_guttata
ENSXMAG00000027291CPSF35977.833ENSTRUG00000013905CPSF310077.833Takifugu_rubripes
ENSXMAG00000027291CPSF39987.228ENSTRUG00000007030cpsf39887.228Takifugu_rubripes
ENSXMAG00000027291CPSF38491.989ENSTBEG00000002707CPSF38491.989Tupaia_belangeri
ENSXMAG00000027291CPSF374100.000ENSTTRG00000000861CPSF380100.000Tursiops_truncatus
ENSXMAG00000027291CPSF39589.008ENSUAMG00000007535CPSF39489.008Ursus_americanus
ENSXMAG00000027291CPSF39387.907ENSUMAG00000003676CPSF39987.907Ursus_maritimus
ENSXMAG00000027291CPSF39287.855ENSVPAG00000008041CPSF310087.855Vicugna_pacos
ENSXMAG00000027291CPSF39888.365ENSVVUG00000002194CPSF39988.365Vulpes_vulpes
ENSXMAG00000027291CPSF39986.232ENSXETG00000008263cpsf39986.232Xenopus_tropicalis
ENSXMAG00000027291CPSF35499.462ENSXCOG00000000957-8799.462Xiphophorus_couchianus
ENSXMAG00000027291CPSF310087.681ENSXCOG00000019695cpsf310087.681Xiphophorus_couchianus
ENSXMAG00000027291CPSF310087.536ENSXMAG00000009784cpsf310087.536Xiphophorus_maculatus

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