EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000027589 (Gene tree)
Gene ID: 106700298
Gene Symbol: gfi1b
Alias: si:ch211-231o6.2
Full Name: growth factor independent 1B transcriptional repressor
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 12972 bases
Position: chr8:6595539-6608510
Accession: 106700298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000026882	zf-C2H2	PF00096.26	1.1e-24	1	5
ENSXMAP00000026882	zf-C2H2	PF00096.26	1.1e-24	2	5
ENSXMAP00000026882	zf-C2H2	PF00096.26	1.1e-24	3	5
ENSXMAP00000026882	zf-C2H2	PF00096.26	1.1e-24	4	5
ENSXMAP00000026882	zf-C2H2	PF00096.26	1.1e-24	5	5
ENSXMAP00000033913	zf-C2H2	PF00096.26	1.5e-16	1	4
ENSXMAP00000033913	zf-C2H2	PF00096.26	1.5e-16	2	4
ENSXMAP00000033913	zf-C2H2	PF00096.26	1.5e-16	3	4
ENSXMAP00000033913	zf-C2H2	PF00096.26	1.5e-16	4	4
ENSXMAP00000026882	zf-met	PF12874.7	1.8e-07	1	2
ENSXMAP00000026882	zf-met	PF12874.7	1.8e-07	2	2
ENSXMAP00000033913	zf-met	PF12874.7	1.6e-05	1	2
ENSXMAP00000033913	zf-met	PF12874.7	1.6e-05	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000037520	-	5047	-	ENSXMAP00000033913	297 (aa)	-	-
ENSXMAT00000040701	-	4686	XM_023338001	ENSXMAP00000026882	328 (aa)	XP_023193769	UPI000C6D2860

Gene Model

Click here to download ENSXMAG00000027589's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000027589's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000027589	gfi1b	100	82.371	ENSAPOG00000001296	gfi1b	100	82.371	Acanthochromis_polyacanthus
ENSXMAG00000027589	gfi1b	99	72.561	ENSACIG00000002190	gfi1b	99	72.561	Amphilophus_citrinellus
ENSXMAG00000027589	gfi1b	100	82.979	ENSAOCG00000021187	gfi1b	100	82.979	Amphiprion_ocellaris
ENSXMAG00000027589	gfi1b	100	83.283	ENSAPEG00000016196	gfi1b	100	83.283	Amphiprion_percula
ENSXMAG00000027589	gfi1b	100	82.979	ENSATEG00000002534	gfi1b	100	82.979	Anabas_testudineus
ENSXMAG00000027589	gfi1b	100	57.971	ENSAPLG00000003373	GFI1B	100	57.971	Anas_platyrhynchos
ENSXMAG00000027589	gfi1b	100	76.596	ENSACLG00000027053	gfi1b	100	76.596	Astatotilapia_calliptera
ENSXMAG00000027589	gfi1b	100	70.206	ENSAMXG00000037544	GFI1B	100	70.206	Astyanax_mexicanus
ENSXMAG00000027589	gfi1b	100	59.639	ENSCAPG00000010404	GFI1B	100	59.639	Cavia_aperea
ENSXMAG00000027589	gfi1b	100	60.000	ENSCPBG00000021186	GFI1B	100	60.000	Chrysemys_picta_bellii
ENSXMAG00000027589	gfi1b	100	80.060	ENSCSEG00000001315	gfi1b	100	80.060	Cynoglossus_semilaevis
ENSXMAG00000027589	gfi1b	100	79.878	ENSCVAG00000017168	gfi1b	100	79.878	Cyprinodon_variegatus
ENSXMAG00000027589	gfi1b	100	70.175	ENSDARG00000079947	gfi1b	99	84.810	Danio_rerio
ENSXMAG00000027589	gfi1b	62	52.941	ENSEEUG00000012609	-	90	52.941	Erinaceus_europaeus
ENSXMAG00000027589	gfi1b	100	75.221	ENSELUG00000016933	gfi1b	100	75.221	Esox_lucius
ENSXMAG00000027589	gfi1b	100	54.121	ENSFALG00000001479	GFI1B	100	54.121	Ficedula_albicollis
ENSXMAG00000027589	gfi1b	100	91.793	ENSFHEG00000015138	gfi1b	100	91.793	Fundulus_heteroclitus
ENSXMAG00000027589	gfi1b	74	83.951	ENSGMOG00000019123	gfi1b	91	83.951	Gadus_morhua
ENSXMAG00000027589	gfi1b	100	58.529	ENSGALG00000003478	GFI1B	100	58.529	Gallus_gallus
ENSXMAG00000027589	gfi1b	71	97.436	ENSGAFG00000003059	gfi1b	100	97.436	Gambusia_affinis
ENSXMAG00000027589	gfi1b	100	74.576	ENSGACG00000018134	gfi1b	100	74.576	Gasterosteus_aculeatus
ENSXMAG00000027589	gfi1b	100	61.791	ENSGAGG00000021327	GFI1B	100	61.791	Gopherus_agassizii
ENSXMAG00000027589	gfi1b	100	76.596	ENSHBUG00000005451	gfi1b	100	76.596	Haplochromis_burtoni
ENSXMAG00000027589	gfi1b	100	76.292	ENSHCOG00000013713	gfi1b	100	76.292	Hippocampus_comes
ENSXMAG00000027589	gfi1b	100	71.091	ENSIPUG00000012769	gfi1b	100	71.091	Ictalurus_punctatus
ENSXMAG00000027589	gfi1b	99	53.316	ENSJJAG00000016355	Gfi1b	100	53.316	Jaculus_jaculus
ENSXMAG00000027589	gfi1b	100	83.333	ENSKMAG00000016047	gfi1b	100	83.333	Kryptolebias_marmoratus
ENSXMAG00000027589	gfi1b	100	82.175	ENSLBEG00000020297	gfi1b	99	82.175	Labrus_bergylta
ENSXMAG00000027589	gfi1b	100	60.947	ENSLACG00000012207	GFI1B	100	60.947	Latimeria_chalumnae
ENSXMAG00000027589	gfi1b	100	67.847	ENSLOCG00000005750	gfi1b	100	67.847	Lepisosteus_oculatus
ENSXMAG00000027589	gfi1b	100	58.601	ENSLAFG00000022367	GFI1B	100	58.601	Loxodonta_africana
ENSXMAG00000027589	gfi1b	100	86.626	ENSMAMG00000003040	gfi1b	100	86.626	Mastacembelus_armatus
ENSXMAG00000027589	gfi1b	99	76.524	ENSMZEG00005015594	gfi1b	99	76.524	Maylandia_zebra
ENSXMAG00000027589	gfi1b	100	58.235	ENSMGAG00000006129	GFI1B	100	58.235	Meleagris_gallopavo
ENSXMAG00000027589	gfi1b	100	81.515	ENSMMOG00000011764	gfi1b	100	81.515	Mola_mola
ENSXMAG00000027589	gfi1b	100	52.973	ENSMODG00000012600	GFI1B	100	52.973	Monodelphis_domestica
ENSXMAG00000027589	gfi1b	100	83.891	ENSMALG00000004034	gfi1b	100	83.891	Monopterus_albus
ENSXMAG00000027589	gfi1b	99	59.587	ENSNGAG00000003333	Gfi1b	100	59.587	Nannospalax_galili
ENSXMAG00000027589	gfi1b	100	76.667	ENSNBRG00000012391	gfi1b	100	76.667	Neolamprologus_brichardi
ENSXMAG00000027589	gfi1b	51	65.672	ENSNBRG00000012376	-	99	65.672	Neolamprologus_brichardi
ENSXMAG00000027589	gfi1b	100	76.364	ENSONIG00000013011	gfi1b	94	92.737	Oreochromis_niloticus
ENSXMAG00000027589	gfi1b	100	61.905	ENSOANG00000014723	GFI1B	100	61.905	Ornithorhynchus_anatinus
ENSXMAG00000027589	gfi1b	100	63.415	ENSORLG00000014390	GFI1B	96	74.638	Oryzias_latipes
ENSXMAG00000027589	gfi1b	100	79.268	ENSORLG00020003719	GFI1B	100	79.268	Oryzias_latipes_hni
ENSXMAG00000027589	gfi1b	100	78.012	ENSORLG00015017142	gfi1b	100	78.012	Oryzias_latipes_hsok
ENSXMAG00000027589	gfi1b	100	78.963	ENSOMEG00000015149	GFI1B	100	78.963	Oryzias_melastigma
ENSXMAG00000027589	gfi1b	100	58.892	ENSOGAG00000008879	GFI1B	100	58.892	Otolemur_garnettii
ENSXMAG00000027589	gfi1b	100	69.477	ENSPKIG00000007643	gfi1b	100	69.477	Paramormyrops_kingsleyae
ENSXMAG00000027589	gfi1b	100	58.689	ENSPSIG00000012112	GFI1B	100	58.689	Pelodiscus_sinensis
ENSXMAG00000027589	gfi1b	99	68.168	ENSPMGG00000006021	gfi1b	99	69.369	Periophthalmus_magnuspinnatus
ENSXMAG00000027589	gfi1b	100	52.105	ENSPCIG00000019724	GFI1B	100	51.842	Phascolarctos_cinereus
ENSXMAG00000027589	gfi1b	100	96.108	ENSPFOG00000003460	gfi1b	100	96.108	Poecilia_formosa
ENSXMAG00000027589	gfi1b	100	94.083	ENSPLAG00000017181	GFI1B	100	94.083	Poecilia_latipinna
ENSXMAG00000027589	gfi1b	100	97.561	ENSPLAG00000021960	GFI1B	100	97.561	Poecilia_latipinna
ENSXMAG00000027589	gfi1b	100	97.561	ENSPMEG00000019220	gfi1b	100	97.561	Poecilia_mexicana
ENSXMAG00000027589	gfi1b	100	97.561	ENSPMEG00000001556	GFI1B	100	97.561	Poecilia_mexicana
ENSXMAG00000027589	gfi1b	100	96.646	ENSPREG00000021718	gfi1b	100	96.646	Poecilia_reticulata
ENSXMAG00000027589	gfi1b	100	76.596	ENSPNYG00000018422	gfi1b	100	76.596	Pundamilia_nyererei
ENSXMAG00000027589	gfi1b	100	70.588	ENSPNAG00000021118	gfi1b	100	70.588	Pygocentrus_nattereri
ENSXMAG00000027589	gfi1b	100	47.396	ENSSHAG00000006462	GFI1B	100	47.396	Sarcophilus_harrisii
ENSXMAG00000027589	gfi1b	80	68.050	ENSSFOG00015011566	gfi1b	90	64.643	Scleropages_formosus
ENSXMAG00000027589	gfi1b	100	81.212	ENSSMAG00000015181	gfi1b	99	80.547	Scophthalmus_maximus
ENSXMAG00000027589	gfi1b	100	84.802	ENSSDUG00000011604	gfi1b	100	84.802	Seriola_dumerili
ENSXMAG00000027589	gfi1b	100	84.195	ENSSLDG00000013823	gfi1b	100	84.195	Seriola_lalandi_dorsalis
ENSXMAG00000027589	gfi1b	100	48.844	ENSSPUG00000016039	GFI1B	100	48.844	Sphenodon_punctatus
ENSXMAG00000027589	gfi1b	100	83.891	ENSSPAG00000022914	gfi1b	100	83.891	Stegastes_partitus
ENSXMAG00000027589	gfi1b	52	47.826	ENSTGUG00000015953	-	84	48.125	Taeniopygia_guttata
ENSXMAG00000027589	gfi1b	51	92.105	ENSTGUG00000005282	-	99	94.737	Taeniopygia_guttata
ENSXMAG00000027589	gfi1b	100	78.354	ENSTRUG00000004525	gfi1b	100	78.354	Takifugu_rubripes
ENSXMAG00000027589	gfi1b	100	76.364	ENSTNIG00000003834	gfi1b	100	76.364	Tetraodon_nigroviridis
ENSXMAG00000027589	gfi1b	100	43.275	ENSTBEG00000014459	GFI1B	100	43.275	Tupaia_belangeri
ENSXMAG00000027589	gfi1b	100	55.493	ENSXETG00000006263	gfi1b	100	56.932	Xenopus_tropicalis