EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000028376 (Gene tree)
Gene ID: 102220727
Gene Symbol: rab42a
Alias: wu:fk59e12|zgc:73061
Full Name: ras-related protein Rab-39B-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 9879 bases
Position: chr13:26828751-26838629
Accession: 102220727
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000024779	MMR_HSR1	PF01926.23	6.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000041317	-	5441	XM_005813215	ENSXMAP00000024779	218 (aa)	XP_005813272	UPI0003B3D0EC

Gene Model

Click here to download ENSXMAG00000028376's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000028376's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000028376	rab42a	100	95.413	ENSAPOG00000009188	rab42a	100	95.413	Acanthochromis_polyacanthus
ENSXMAG00000028376	rab42a	100	95.413	ENSACIG00000003102	rab42a	100	95.413	Amphilophus_citrinellus
ENSXMAG00000028376	rab42a	100	96.330	ENSAOCG00000012921	rab42a	83	96.330	Amphiprion_ocellaris
ENSXMAG00000028376	rab42a	100	96.330	ENSAPEG00000007713	rab42a	83	96.330	Amphiprion_percula
ENSXMAG00000028376	rab42a	100	93.578	ENSATEG00000009052	rab42a	100	93.578	Anabas_testudineus
ENSXMAG00000028376	rab42a	100	94.495	ENSACLG00000007514	rab42a	100	94.495	Astatotilapia_calliptera
ENSXMAG00000028376	rab42a	100	88.991	ENSAMXG00000032729	rab42a	100	88.991	Astyanax_mexicanus
ENSXMAG00000028376	rab42a	100	92.202	ENSCSEG00000010582	rab42a	100	92.202	Cynoglossus_semilaevis
ENSXMAG00000028376	rab42a	90	49.239	ENSDARG00000102580	CU571310.1	93	49.239	Danio_rerio
ENSXMAG00000028376	rab42a	100	90.367	ENSDARG00000034215	rab42a	100	90.367	Danio_rerio
ENSXMAG00000028376	rab42a	100	88.991	ENSELUG00000010345	rab42a	100	88.991	Esox_lucius
ENSXMAG00000028376	rab42a	100	98.624	ENSFHEG00000013106	rab42a	100	98.624	Fundulus_heteroclitus
ENSXMAG00000028376	rab42a	100	99.541	ENSGAFG00000002141	rab42a	100	99.541	Gambusia_affinis
ENSXMAG00000028376	rab42a	100	94.495	ENSHBUG00000015126	rab42a	82	94.495	Haplochromis_burtoni
ENSXMAG00000028376	rab42a	100	85.780	ENSIPUG00000011376	rab42a	100	85.780	Ictalurus_punctatus
ENSXMAG00000028376	rab42a	100	96.789	ENSKMAG00000007267	rab42a	100	96.789	Kryptolebias_marmoratus
ENSXMAG00000028376	rab42a	100	94.954	ENSLBEG00000001193	rab42a	100	94.954	Labrus_bergylta
ENSXMAG00000028376	rab42a	100	64.220	ENSLACG00000012755	-	100	64.220	Latimeria_chalumnae
ENSXMAG00000028376	rab42a	100	81.193	ENSLOCG00000003453	rab42a	100	81.193	Lepisosteus_oculatus
ENSXMAG00000028376	rab42a	100	50.228	ENSLOCG00000015825	-	99	50.228	Lepisosteus_oculatus
ENSXMAG00000028376	rab42a	100	96.330	ENSMAMG00000002296	rab42a	100	96.330	Mastacembelus_armatus
ENSXMAG00000028376	rab42a	100	94.495	ENSMZEG00005012460	rab42a	82	94.495	Maylandia_zebra
ENSXMAG00000028376	rab42a	100	92.202	ENSMMOG00000014358	rab42a	100	92.202	Mola_mola
ENSXMAG00000028376	rab42a	100	94.954	ENSNBRG00000021487	rab42a	82	94.954	Neolamprologus_brichardi
ENSXMAG00000028376	rab42a	100	95.872	ENSORLG00000022335	rab42a	100	95.872	Oryzias_latipes
ENSXMAG00000028376	rab42a	100	95.872	ENSORLG00020013895	rab42a	100	95.872	Oryzias_latipes_hni
ENSXMAG00000028376	rab42a	100	95.872	ENSORLG00015004273	rab42a	100	95.872	Oryzias_latipes_hsok
ENSXMAG00000028376	rab42a	100	95.872	ENSOMEG00000020418	rab42a	100	95.872	Oryzias_melastigma
ENSXMAG00000028376	rab42a	89	48.454	ENSPKIG00000015234	-	93	48.454	Paramormyrops_kingsleyae
ENSXMAG00000028376	rab42a	100	77.169	ENSPKIG00000021215	-	100	77.169	Paramormyrops_kingsleyae
ENSXMAG00000028376	rab42a	90	96.447	ENSPMGG00000024112	rab42a	90	96.447	Periophthalmus_magnuspinnatus
ENSXMAG00000028376	rab42a	100	98.624	ENSPFOG00000004838	rab42a	82	98.624	Poecilia_formosa
ENSXMAG00000028376	rab42a	100	99.083	ENSPLAG00000005628	rab42a	100	99.083	Poecilia_latipinna
ENSXMAG00000028376	rab42a	100	98.624	ENSPMEG00000019497	rab42a	100	98.624	Poecilia_mexicana
ENSXMAG00000028376	rab42a	100	99.541	ENSPREG00000013962	rab42a	100	99.541	Poecilia_reticulata
ENSXMAG00000028376	rab42a	100	94.495	ENSPNYG00000010325	rab42a	82	94.495	Pundamilia_nyererei
ENSXMAG00000028376	rab42a	100	88.532	ENSPNAG00000016567	rab42a	100	88.532	Pygocentrus_nattereri
ENSXMAG00000028376	rab42a	100	45.662	ENSSFOG00015016000	-	97	45.662	Scleropages_formosus
ENSXMAG00000028376	rab42a	100	83.945	ENSSFOG00015020732	rab42a	100	83.945	Scleropages_formosus
ENSXMAG00000028376	rab42a	100	94.037	ENSSMAG00000020311	rab42a	100	94.037	Scophthalmus_maximus
ENSXMAG00000028376	rab42a	100	96.789	ENSSDUG00000011851	rab42a	100	96.789	Seriola_dumerili
ENSXMAG00000028376	rab42a	100	96.789	ENSSLDG00000020354	rab42a	100	96.789	Seriola_lalandi_dorsalis
ENSXMAG00000028376	rab42a	100	96.330	ENSSPAG00000016167	rab42a	100	96.330	Stegastes_partitus
ENSXMAG00000028376	rab42a	100	95.413	ENSTRUG00000010224	rab42a	100	95.413	Takifugu_rubripes
ENSXMAG00000028376	rab42a	100	100.000	ENSXCOG00000003428	rab42a	100	100.000	Xiphophorus_couchianus