EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000028567 (Gene tree)
Gene ID: 102228875
Gene Symbol: scrt2
Alias: fc69h09|wu:fc69h09|zgc:162551
Full Name: transcriptional repressor scratch 1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 10251 bases
Position: chr1:25551342-25561592
Accession: 102228875
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000029668	zf-C2H2	PF00096.26	4.7e-25	1	4
ENSXMAP00000029668	zf-C2H2	PF00096.26	4.7e-25	2	4
ENSXMAP00000029668	zf-C2H2	PF00096.26	4.7e-25	3	4
ENSXMAP00000029668	zf-C2H2	PF00096.26	4.7e-25	4	4
ENSXMAP00000029668	zf-met	PF12874.7	1.3e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000026256	-	6003	XM_005798902	ENSXMAP00000029668	319 (aa)	XP_005798959	M4AAW4

Gene Model

Click here to download ENSXMAG00000028567's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000028567's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000028567	scrt2	97	60.000	ENSAPOG00000015197	-	97	60.000	Acanthochromis_polyacanthus
ENSXMAG00000028567	scrt2	97	66.129	ENSAPOG00000009279	scrt1b	96	65.161	Acanthochromis_polyacanthus
ENSXMAG00000028567	scrt2	100	96.552	ENSAPOG00000003680	scrt2	100	96.552	Acanthochromis_polyacanthus
ENSXMAG00000028567	scrt2	100	83.699	ENSACIG00000012604	scrt2	100	83.699	Amphilophus_citrinellus
ENSXMAG00000028567	scrt2	97	59.502	ENSACIG00000006586	-	97	59.502	Amphilophus_citrinellus
ENSXMAG00000028567	scrt2	100	62.963	ENSACIG00000001296	-	100	63.272	Amphilophus_citrinellus
ENSXMAG00000028567	scrt2	97	63.226	ENSACIG00000013613	scrt1b	96	63.226	Amphilophus_citrinellus
ENSXMAG00000028567	scrt2	97	66.129	ENSAOCG00000003910	scrt1b	96	65.161	Amphiprion_ocellaris
ENSXMAG00000028567	scrt2	100	96.552	ENSAOCG00000021557	scrt2	100	96.552	Amphiprion_ocellaris
ENSXMAG00000028567	scrt2	97	59.190	ENSAOCG00000023304	-	97	59.190	Amphiprion_ocellaris
ENSXMAG00000028567	scrt2	100	96.552	ENSAPEG00000022558	scrt2	100	96.552	Amphiprion_percula
ENSXMAG00000028567	scrt2	97	59.190	ENSAPEG00000005677	-	97	59.190	Amphiprion_percula
ENSXMAG00000028567	scrt2	97	66.129	ENSAPEG00000000869	scrt1b	96	65.161	Amphiprion_percula
ENSXMAG00000028567	scrt2	100	62.727	ENSATEG00000003195	-	100	62.727	Anabas_testudineus
ENSXMAG00000028567	scrt2	97	61.415	ENSATEG00000011660	-	97	61.415	Anabas_testudineus
ENSXMAG00000028567	scrt2	100	94.671	ENSATEG00000023998	scrt2	100	94.671	Anabas_testudineus
ENSXMAG00000028567	scrt2	97	65.806	ENSATEG00000002302	scrt1b	96	65.806	Anabas_testudineus
ENSXMAG00000028567	scrt2	74	71.489	ENSACAG00000016109	SCRT2	95	71.489	Anolis_carolinensis
ENSXMAG00000028567	scrt2	97	64.839	ENSACLG00000007162	scrt1b	96	64.839	Astatotilapia_calliptera
ENSXMAG00000028567	scrt2	97	59.077	ENSACLG00000012046	-	97	59.077	Astatotilapia_calliptera
ENSXMAG00000028567	scrt2	97	65.696	ENSAMXG00000038085	scrt1a	97	65.696	Astyanax_mexicanus
ENSXMAG00000028567	scrt2	97	64.839	ENSAMXG00000042624	SCRT1	98	64.839	Astyanax_mexicanus
ENSXMAG00000028567	scrt2	89	76.842	ENSAMXG00000034158	scrt2	97	76.842	Astyanax_mexicanus
ENSXMAG00000028567	scrt2	56	56.667	WBGene00000468	ces-1	59	55.000	Caenorhabditis_elegans
ENSXMAG00000028567	scrt2	88	60.714	ENSCPBG00000027613	SCRT2	100	60.714	Chrysemys_picta_bellii
ENSXMAG00000028567	scrt2	97	64.839	ENSCPBG00000018899	SCRT1	97	64.839	Chrysemys_picta_bellii
ENSXMAG00000028567	scrt2	97	64.725	ENSCSEG00000008596	scrt1b	96	64.725	Cynoglossus_semilaevis
ENSXMAG00000028567	scrt2	97	59.502	ENSCSEG00000014892	-	97	59.502	Cynoglossus_semilaevis
ENSXMAG00000028567	scrt2	100	90.909	ENSCSEG00000021542	scrt2	100	90.909	Cynoglossus_semilaevis
ENSXMAG00000028567	scrt2	97	65.372	ENSCVAG00000009561	scrt1b	96	65.372	Cyprinodon_variegatus
ENSXMAG00000028567	scrt2	99	59.394	ENSCVAG00000003190	-	100	59.394	Cyprinodon_variegatus
ENSXMAG00000028567	scrt2	100	98.746	ENSCVAG00000021038	scrt2	100	98.746	Cyprinodon_variegatus
ENSXMAG00000028567	scrt2	97	65.372	ENSDARG00000100821	scrt1a	97	65.372	Danio_rerio
ENSXMAG00000028567	scrt2	97	66.019	ENSDARG00000040214	scrt1b	97	66.019	Danio_rerio
ENSXMAG00000028567	scrt2	100	86.503	ENSELUG00000023883	scrt2	100	87.730	Esox_lucius
ENSXMAG00000028567	scrt2	97	66.343	ENSELUG00000005435	scrt1b	96	66.343	Esox_lucius
ENSXMAG00000028567	scrt2	97	66.234	ENSELUG00000022228	scrt1a	96	66.234	Esox_lucius
ENSXMAG00000028567	scrt2	80	65.759	ENSFALG00000005718	SCRT2	97	66.926	Ficedula_albicollis
ENSXMAG00000028567	scrt2	97	59.502	ENSFHEG00000009794	-	97	59.502	Fundulus_heteroclitus
ENSXMAG00000028567	scrt2	97	64.725	ENSFHEG00000014820	scrt1b	96	64.725	Fundulus_heteroclitus
ENSXMAG00000028567	scrt2	100	86.834	ENSFHEG00000005732	scrt2	100	86.834	Fundulus_heteroclitus
ENSXMAG00000028567	scrt2	99	78.723	ENSGMOG00000019519	scrt2	99	78.723	Gadus_morhua
ENSXMAG00000028567	scrt2	96	64.935	ENSGMOG00000000629	scrt1b	96	64.935	Gadus_morhua
ENSXMAG00000028567	scrt2	97	59.223	ENSGALG00000028912	SCRT2	97	59.871	Gallus_gallus
ENSXMAG00000028567	scrt2	97	65.372	ENSGAFG00000007636	scrt1b	96	65.372	Gambusia_affinis
ENSXMAG00000028567	scrt2	99	58.621	ENSGAFG00000009650	-	100	58.621	Gambusia_affinis
ENSXMAG00000028567	scrt2	100	92.790	ENSGAFG00000003093	scrt2	100	92.790	Gambusia_affinis
ENSXMAG00000028567	scrt2	97	59.062	ENSGACG00000004072	-	97	59.062	Gasterosteus_aculeatus
ENSXMAG00000028567	scrt2	96	62.987	ENSGACG00000008982	scrt1b	96	62.987	Gasterosteus_aculeatus
ENSXMAG00000028567	scrt2	100	61.129	ENSGAGG00000020761	SCRT2	100	61.129	Gopherus_agassizii
ENSXMAG00000028567	scrt2	97	63.871	ENSGAGG00000011736	SCRT1	98	63.871	Gopherus_agassizii
ENSXMAG00000028567	scrt2	66	72.986	ENSGAGG00000020760	-	74	72.986	Gopherus_agassizii
ENSXMAG00000028567	scrt2	97	64.839	ENSHBUG00000016621	scrt1b	96	64.839	Haplochromis_burtoni
ENSXMAG00000028567	scrt2	97	59.190	ENSHBUG00000019101	-	97	59.190	Haplochromis_burtoni
ENSXMAG00000028567	scrt2	100	96.238	ENSHBUG00000012492	scrt2	100	96.238	Haplochromis_burtoni
ENSXMAG00000028567	scrt2	97	64.725	ENSHCOG00000016704	scrt1b	96	64.725	Hippocampus_comes
ENSXMAG00000028567	scrt2	97	58.842	ENSHCOG00000016179	-	97	59.486	Hippocampus_comes
ENSXMAG00000028567	scrt2	100	84.062	ENSHCOG00000008116	scrt2	100	84.062	Hippocampus_comes
ENSXMAG00000028567	scrt2	97	61.812	ENSIPUG00000005547	-	98	61.812	Ictalurus_punctatus
ENSXMAG00000028567	scrt2	97	65.595	ENSIPUG00000004551	scrt1a	97	65.595	Ictalurus_punctatus
ENSXMAG00000028567	scrt2	97	65.372	ENSKMAG00000005484	scrt1b	96	65.372	Kryptolebias_marmoratus
ENSXMAG00000028567	scrt2	100	96.238	ENSKMAG00000018087	scrt2	100	96.238	Kryptolebias_marmoratus
ENSXMAG00000028567	scrt2	99	58.788	ENSKMAG00000009489	-	100	58.788	Kryptolebias_marmoratus
ENSXMAG00000028567	scrt2	100	95.000	ENSLBEG00000015419	scrt2	100	95.000	Labrus_bergylta
ENSXMAG00000028567	scrt2	97	59.062	ENSLBEG00000023388	-	97	59.062	Labrus_bergylta
ENSXMAG00000028567	scrt2	97	66.343	ENSLACG00000003588	SCRT1	96	66.343	Latimeria_chalumnae
ENSXMAG00000028567	scrt2	100	65.644	ENSLOCG00000002246	scrt2	100	65.528	Lepisosteus_oculatus
ENSXMAG00000028567	scrt2	97	67.638	ENSLOCG00000007573	scrt1b	97	67.638	Lepisosteus_oculatus
ENSXMAG00000028567	scrt2	100	95.298	ENSMAMG00000001291	scrt2	100	95.298	Mastacembelus_armatus
ENSXMAG00000028567	scrt2	97	65.161	ENSMAMG00000011698	scrt1b	96	65.161	Mastacembelus_armatus
ENSXMAG00000028567	scrt2	97	64.839	ENSMZEG00005005627	scrt1b	96	64.839	Maylandia_zebra
ENSXMAG00000028567	scrt2	100	96.238	ENSMZEG00005026445	scrt2	100	96.238	Maylandia_zebra
ENSXMAG00000028567	scrt2	97	59.190	ENSMZEG00005026702	-	97	59.190	Maylandia_zebra
ENSXMAG00000028567	scrt2	80	66.406	ENSMGAG00000016579	SCRT2	97	67.188	Meleagris_gallopavo
ENSXMAG00000028567	scrt2	99	93.711	ENSMMOG00000009272	scrt2	99	94.025	Mola_mola
ENSXMAG00000028567	scrt2	97	59.317	ENSMMOG00000018345	-	97	59.317	Mola_mola
ENSXMAG00000028567	scrt2	97	65.049	ENSMMOG00000003327	scrt1b	96	64.078	Mola_mola
ENSXMAG00000028567	scrt2	97	65.372	ENSMALG00000012704	scrt1b	96	65.372	Monopterus_albus
ENSXMAG00000028567	scrt2	100	79.624	ENSMALG00000013656	scrt2	100	79.624	Monopterus_albus
ENSXMAG00000028567	scrt2	51	76.970	ENSNGAG00000020815	Scrt2	72	81.208	Nannospalax_galili
ENSXMAG00000028567	scrt2	97	64.401	ENSNBRG00000013983	scrt1b	96	64.725	Neolamprologus_brichardi
ENSXMAG00000028567	scrt2	97	59.190	ENSNBRG00000014882	-	97	59.190	Neolamprologus_brichardi
ENSXMAG00000028567	scrt2	100	84.013	ENSNBRG00000007221	scrt2	100	84.013	Neolamprologus_brichardi
ENSXMAG00000028567	scrt2	100	95.925	ENSONIG00000016758	scrt2	100	95.925	Oreochromis_niloticus
ENSXMAG00000028567	scrt2	97	59.337	ENSONIG00000019809	-	100	59.337	Oreochromis_niloticus
ENSXMAG00000028567	scrt2	100	62.121	ENSONIG00000003152	-	100	61.442	Oreochromis_niloticus
ENSXMAG00000028567	scrt2	97	64.839	ENSONIG00000006007	scrt1b	100	64.744	Oreochromis_niloticus
ENSXMAG00000028567	scrt2	100	95.925	ENSORLG00000024051	scrt2	100	95.925	Oryzias_latipes
ENSXMAG00000028567	scrt2	97	65.161	ENSORLG00000025651	scrt1b	96	65.161	Oryzias_latipes
ENSXMAG00000028567	scrt2	99	57.530	ENSORLG00000022825	-	100	57.530	Oryzias_latipes
ENSXMAG00000028567	scrt2	100	95.925	ENSORLG00020011478	scrt2	100	95.925	Oryzias_latipes_hni
ENSXMAG00000028567	scrt2	97	65.161	ENSORLG00020012967	scrt1b	96	65.161	Oryzias_latipes_hni
ENSXMAG00000028567	scrt2	99	57.530	ENSORLG00015010104	-	100	57.530	Oryzias_latipes_hsok
ENSXMAG00000028567	scrt2	100	95.925	ENSORLG00015005524	scrt2	100	95.925	Oryzias_latipes_hsok
ENSXMAG00000028567	scrt2	97	65.161	ENSORLG00015019165	scrt1b	96	65.161	Oryzias_latipes_hsok
ENSXMAG00000028567	scrt2	99	58.967	ENSOMEG00000000286	-	100	58.967	Oryzias_melastigma
ENSXMAG00000028567	scrt2	97	65.161	ENSOMEG00000003925	scrt1b	96	65.161	Oryzias_melastigma
ENSXMAG00000028567	scrt2	100	95.925	ENSOMEG00000002661	scrt2	100	95.925	Oryzias_melastigma
ENSXMAG00000028567	scrt2	97	66.019	ENSPKIG00000020085	scrt1a	97	66.019	Paramormyrops_kingsleyae
ENSXMAG00000028567	scrt2	97	67.314	ENSPKIG00000022303	SCRT1	97	67.314	Paramormyrops_kingsleyae
ENSXMAG00000028567	scrt2	97	59.810	ENSPMGG00000021402	-	97	59.810	Periophthalmus_magnuspinnatus
ENSXMAG00000028567	scrt2	97	63.754	ENSPMGG00000002260	scrt1b	96	63.754	Periophthalmus_magnuspinnatus
ENSXMAG00000028567	scrt2	100	78.125	ENSPMGG00000016561	scrt2	100	78.125	Periophthalmus_magnuspinnatus
ENSXMAG00000028567	scrt2	99	58.232	ENSPFOG00000005616	-	100	58.232	Poecilia_formosa
ENSXMAG00000028567	scrt2	100	99.373	ENSPFOG00000007738	scrt2	100	99.373	Poecilia_formosa
ENSXMAG00000028567	scrt2	97	65.372	ENSPFOG00000017719	scrt1b	96	65.372	Poecilia_formosa
ENSXMAG00000028567	scrt2	97	65.372	ENSPLAG00000009876	scrt1b	96	65.372	Poecilia_latipinna
ENSXMAG00000028567	scrt2	99	58.232	ENSPLAG00000011718	-	100	58.232	Poecilia_latipinna
ENSXMAG00000028567	scrt2	100	88.715	ENSPLAG00000005765	scrt2	100	88.715	Poecilia_latipinna
ENSXMAG00000028567	scrt2	97	65.372	ENSPMEG00000013274	scrt1b	96	65.372	Poecilia_mexicana
ENSXMAG00000028567	scrt2	99	58.232	ENSPMEG00000011706	-	100	58.232	Poecilia_mexicana
ENSXMAG00000028567	scrt2	100	88.715	ENSPMEG00000001538	scrt2	100	88.715	Poecilia_mexicana
ENSXMAG00000028567	scrt2	100	99.060	ENSPREG00000001147	scrt2	100	99.060	Poecilia_reticulata
ENSXMAG00000028567	scrt2	97	65.372	ENSPREG00000018985	scrt1b	96	65.372	Poecilia_reticulata
ENSXMAG00000028567	scrt2	99	57.927	ENSPREG00000012166	-	100	57.927	Poecilia_reticulata
ENSXMAG00000028567	scrt2	97	59.190	ENSPNYG00000008865	-	97	59.190	Pundamilia_nyererei
ENSXMAG00000028567	scrt2	97	64.839	ENSPNYG00000017733	scrt1b	96	64.839	Pundamilia_nyererei
ENSXMAG00000028567	scrt2	100	84.013	ENSPNYG00000013109	scrt2	100	84.013	Pundamilia_nyererei
ENSXMAG00000028567	scrt2	97	64.194	ENSPNAG00000027880	-	98	64.194	Pygocentrus_nattereri
ENSXMAG00000028567	scrt2	97	66.343	ENSPNAG00000017415	scrt1a	97	66.343	Pygocentrus_nattereri
ENSXMAG00000028567	scrt2	97	65.372	ENSSFOG00015001195	SCRT1	97	65.372	Scleropages_formosus
ENSXMAG00000028567	scrt2	97	58.462	ENSSMAG00000005122	-	97	58.462	Scophthalmus_maximus
ENSXMAG00000028567	scrt2	97	64.401	ENSSMAG00000019207	scrt1b	96	64.401	Scophthalmus_maximus
ENSXMAG00000028567	scrt2	97	90.260	ENSSDUG00000001637	scrt2	95	90.260	Seriola_dumerili
ENSXMAG00000028567	scrt2	97	59.561	ENSSDUG00000013215	-	97	59.561	Seriola_dumerili
ENSXMAG00000028567	scrt2	97	65.484	ENSSDUG00000007752	scrt1b	96	65.484	Seriola_dumerili
ENSXMAG00000028567	scrt2	100	95.611	ENSSLDG00000013565	scrt2	100	95.611	Seriola_lalandi_dorsalis
ENSXMAG00000028567	scrt2	97	59.561	ENSSLDG00000016454	-	97	59.561	Seriola_lalandi_dorsalis
ENSXMAG00000028567	scrt2	97	65.484	ENSSLDG00000017166	scrt1b	96	65.484	Seriola_lalandi_dorsalis
ENSXMAG00000028567	scrt2	97	62.581	ENSSPUG00000018637	SCRT2	97	62.581	Sphenodon_punctatus
ENSXMAG00000028567	scrt2	97	65.484	ENSSPAG00000002200	scrt1b	96	65.484	Stegastes_partitus
ENSXMAG00000028567	scrt2	100	84.639	ENSSPAG00000014018	scrt2	100	84.639	Stegastes_partitus
ENSXMAG00000028567	scrt2	97	59.502	ENSSPAG00000006788	-	97	59.502	Stegastes_partitus
ENSXMAG00000028567	scrt2	80	65.625	ENSTGUG00000006801	SCRT2	99	66.797	Taeniopygia_guttata
ENSXMAG00000028567	scrt2	81	63.424	ENSTRUG00000019558	-	79	63.813	Takifugu_rubripes
ENSXMAG00000028567	scrt2	97	59.502	ENSTRUG00000012719	-	97	59.813	Takifugu_rubripes
ENSXMAG00000028567	scrt2	96	63.636	ENSTRUG00000011637	scrt1b	97	63.636	Takifugu_rubripes
ENSXMAG00000028567	scrt2	99	88.365	ENSTRUG00000007620	scrt2	99	88.365	Takifugu_rubripes
ENSXMAG00000028567	scrt2	99	93.082	ENSTNIG00000012473	scrt2	99	92.767	Tetraodon_nigroviridis
ENSXMAG00000028567	scrt2	96	63.636	ENSTNIG00000018384	scrt1b	96	63.636	Tetraodon_nigroviridis
ENSXMAG00000028567	scrt2	100	94.044	ENSXCOG00000014367	scrt2	100	94.044	Xiphophorus_couchianus
ENSXMAG00000028567	scrt2	97	65.372	ENSXCOG00000019675	scrt1b	96	65.372	Xiphophorus_couchianus
ENSXMAG00000028567	scrt2	99	57.053	ENSXCOG00000019861	-	100	57.053	Xiphophorus_couchianus
ENSXMAG00000028567	scrt2	97	65.372	ENSXMAG00000027885	scrt1b	96	65.372	Xiphophorus_maculatus
ENSXMAG00000028567	scrt2	99	57.927	ENSXMAG00000015353	-	100	57.927	Xiphophorus_maculatus