EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000028625 (Gene tree)
Gene ID: 102236797
Gene Symbol: -
Alias: -
Full Name: gastrula zinc finger protein XlCGF52.1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 2784 bases
Position: chr6:29955992-29958775
Accession: 102236797
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	1	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	2	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	3	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	4	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	5	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	6	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	7	8
ENSXMAP00000031695	zf-C2H2	PF00096.26	8.5e-47	8	8
ENSXMAP00000031695	zf-met	PF12874.7	1e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000028188	-	1497	XM_014474587	ENSXMAP00000031695	498 (aa)	XP_014330073	UPI0006D8E7E8

Gene Model

Click here to download ENSXMAG00000028625's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000028625's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000028625	-	98	79.276	ENSAPOG00000004328	-	99	79.276	Acanthochromis_polyacanthus
ENSXMAG00000028625	-	87	39.672	ENSAPOG00000013511	-	59	39.672	Acanthochromis_polyacanthus
ENSXMAG00000028625	-	96	36.646	ENSACIG00000010739	-	79	36.646	Amphilophus_citrinellus
ENSXMAG00000028625	-	97	79.466	ENSAOCG00000007045	-	93	79.466	Amphiprion_ocellaris
ENSXMAG00000028625	-	96	35.526	ENSAPEG00000016483	-	66	34.744	Amphiprion_percula
ENSXMAG00000028625	-	96	79.039	ENSAPEG00000001596	-	81	79.039	Amphiprion_percula
ENSXMAG00000028625	-	100	78.330	ENSATEG00000006085	-	100	78.330	Anabas_testudineus
ENSXMAG00000028625	-	89	42.647	ENSACAG00000000082	-	99	41.176	Anolis_carolinensis
ENSXMAG00000028625	-	89	46.040	ENSACAG00000025537	-	100	46.040	Anolis_carolinensis
ENSXMAG00000028625	-	90	46.032	ENSAMXG00000036257	-	98	46.032	Astyanax_mexicanus
ENSXMAG00000028625	-	90	32.857	ENSAMXG00000017199	-	50	34.375	Astyanax_mexicanus
ENSXMAG00000028625	-	90	49.048	ENSAMXG00000035145	-	70	49.048	Astyanax_mexicanus
ENSXMAG00000028625	-	89	47.015	ENSAMXG00000035949	-	81	47.015	Astyanax_mexicanus
ENSXMAG00000028625	-	90	46.725	ENSAMXG00000012873	-	97	46.725	Astyanax_mexicanus
ENSXMAG00000028625	-	89	39.607	ENSAMXG00000026143	-	98	39.607	Astyanax_mexicanus
ENSXMAG00000028625	-	89	42.532	ENSAMXG00000032237	-	95	42.532	Astyanax_mexicanus
ENSXMAG00000028625	-	90	47.586	ENSAMXG00000033013	-	84	47.586	Astyanax_mexicanus
ENSXMAG00000028625	-	100	83.597	ENSCVAG00000011235	-	100	83.794	Cyprinodon_variegatus
ENSXMAG00000028625	-	89	41.438	ENSELUG00000013357	-	91	36.905	Esox_lucius
ENSXMAG00000028625	-	90	38.728	ENSELUG00000013844	-	90	33.073	Esox_lucius
ENSXMAG00000028625	-	89	37.371	ENSELUG00000021287	-	79	41.270	Esox_lucius
ENSXMAG00000028625	-	87	37.717	ENSFHEG00000019915	-	75	37.717	Fundulus_heteroclitus
ENSXMAG00000028625	-	89	41.991	ENSGMOG00000003238	-	98	41.631	Gadus_morhua
ENSXMAG00000028625	-	100	97.390	ENSGAFG00000012977	-	100	97.390	Gambusia_affinis
ENSXMAG00000028625	-	89	38.416	ENSGAFG00000003150	-	83	38.172	Gambusia_affinis
ENSXMAG00000028625	-	89	47.264	ENSIPUG00000021556	-	93	47.264	Ictalurus_punctatus
ENSXMAG00000028625	-	89	45.283	ENSIPUG00000004428	-	76	45.283	Ictalurus_punctatus
ENSXMAG00000028625	-	92	40.288	ENSIPUG00000006916	-	83	40.288	Ictalurus_punctatus
ENSXMAG00000028625	-	100	78.082	ENSKMAG00000004988	-	100	78.082	Kryptolebias_marmoratus
ENSXMAG00000028625	-	91	43.590	ENSLOCG00000014366	-	94	43.590	Lepisosteus_oculatus
ENSXMAG00000028625	-	90	39.423	ENSLOCG00000014144	-	100	37.941	Lepisosteus_oculatus
ENSXMAG00000028625	-	88	39.104	ENSMAMG00000016542	-	66	37.297	Mastacembelus_armatus
ENSXMAG00000028625	-	100	79.125	ENSMAMG00000019301	-	100	79.125	Mastacembelus_armatus
ENSXMAG00000028625	-	90	38.298	ENSMMOG00000009852	-	92	38.298	Mola_mola
ENSXMAG00000028625	-	91	42.802	ENSMALG00000005554	-	98	43.750	Monopterus_albus
ENSXMAG00000028625	-	89	44.275	ENSOCUG00000005876	-	100	44.286	Oryctolagus_cuniculus
ENSXMAG00000028625	-	91	37.674	ENSPKIG00000006616	-	62	37.674	Paramormyrops_kingsleyae
ENSXMAG00000028625	-	87	36.010	ENSPMGG00000017633	-	91	36.010	Periophthalmus_magnuspinnatus
ENSXMAG00000028625	-	100	98.394	ENSPFOG00000010682	-	100	98.394	Poecilia_formosa
ENSXMAG00000028625	-	86	38.504	ENSPLAG00000002892	-	69	38.504	Poecilia_latipinna
ENSXMAG00000028625	-	100	97.791	ENSPMEG00000001399	-	100	97.791	Poecilia_mexicana
ENSXMAG00000028625	-	94	37.500	ENSPREG00000002582	-	68	35.714	Poecilia_reticulata
ENSXMAG00000028625	-	100	98.394	ENSPREG00000001386	-	100	98.394	Poecilia_reticulata
ENSXMAG00000028625	-	90	39.273	ENSPNAG00000025570	-	82	39.273	Pygocentrus_nattereri
ENSXMAG00000028625	-	89	43.465	ENSPNAG00000000219	-	88	43.465	Pygocentrus_nattereri
ENSXMAG00000028625	-	89	47.807	ENSPNAG00000015116	-	78	47.807	Pygocentrus_nattereri
ENSXMAG00000028625	-	89	41.818	ENSSFOG00015006108	-	59	41.818	Scleropages_formosus
ENSXMAG00000028625	-	93	45.374	ENSSMAG00000009115	-	81	50.877	Scophthalmus_maximus
ENSXMAG00000028625	-	100	79.125	ENSSDUG00000006463	-	100	79.125	Seriola_dumerili
ENSXMAG00000028625	-	79	51.613	ENSSDUG00000002195	-	86	51.613	Seriola_dumerili
ENSXMAG00000028625	-	100	78.529	ENSSLDG00000006724	-	100	74.854	Seriola_lalandi_dorsalis
ENSXMAG00000028625	-	91	40.308	ENSSLDG00000020727	-	97	40.308	Seriola_lalandi_dorsalis
ENSXMAG00000028625	-	87	38.647	ENSSPAG00000012960	-	82	38.647	Stegastes_partitus
ENSXMAG00000028625	-	87	49.524	ENSSPAG00000021008	-	92	45.318	Stegastes_partitus
ENSXMAG00000028625	-	90	41.502	ENSTRUG00000005321	-	97	39.925	Takifugu_rubripes
ENSXMAG00000028625	-	91	40.893	ENSTRUG00000021675	-	92	40.893	Takifugu_rubripes
ENSXMAG00000028625	-	92	41.048	ENSTNIG00000008200	-	100	41.048	Tetraodon_nigroviridis
ENSXMAG00000028625	-	89	45.946	ENSTNIG00000000320	-	100	45.763	Tetraodon_nigroviridis
ENSXMAG00000028625	-	90	41.368	ENSXETG00000006575	znf420	81	41.368	Xenopus_tropicalis
ENSXMAG00000028625	-	90	40.418	ENSXCOG00000009665	-	92	46.591	Xiphophorus_couchianus