EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000028711 (Gene tree)
Gene ID: 102221261
Gene Symbol: -
Alias: -
Full Name: poly(rC)-binding protein 3
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 24576 bases
Position: chr7:29834216-29858791
Accession: 102221261
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000034137	KH_1	PF00013.29	1.1e-54	1	3
ENSXMAP00000034137	KH_1	PF00013.29	1.1e-54	2	3
ENSXMAP00000034137	KH_1	PF00013.29	1.1e-54	3	3
ENSXMAP00000037792	KH_1	PF00013.29	1.3e-50	1	3
ENSXMAP00000037792	KH_1	PF00013.29	1.3e-50	2	3
ENSXMAP00000037792	KH_1	PF00013.29	1.3e-50	3	3
ENSXMAP00000034137	KH_2	PF07650.17	2.3e-14	1	1
ENSXMAP00000037792	KH_2	PF07650.17	1.2e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000031511	-	1005	XM_023337613	ENSXMAP00000037792	334 (aa)	XP_023193381	-
ENSXMAT00000036668	-	3975	XM_023337611	ENSXMAP00000034137	327 (aa)	XP_023193379	UPI000C6CB5C0

Gene Model

Click here to download ENSXMAG00000028711's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000028711's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000028711	-	95	94.839	ENSAPOG00000020003	pcbp3	86	94.839	Acanthochromis_polyacanthus
ENSXMAG00000028711	-	100	99.694	ENSAPOG00000016582	-	100	99.694	Acanthochromis_polyacanthus
ENSXMAG00000028711	-	93	91.641	ENSAMEG00000001697	-	99	84.900	Ailuropoda_melanoleuca
ENSXMAG00000028711	-	100	88.286	ENSACIG00000010933	pcbp3	100	88.286	Amphilophus_citrinellus
ENSXMAG00000028711	-	100	92.941	ENSACIG00000002739	-	100	92.941	Amphilophus_citrinellus
ENSXMAG00000028711	-	91	95.053	ENSAOCG00000007806	-	97	95.053	Amphiprion_ocellaris
ENSXMAG00000028711	-	97	95.584	ENSAOCG00000008592	-	100	95.584	Amphiprion_ocellaris
ENSXMAG00000028711	-	95	97.428	ENSAPEG00000005209	-	97	97.428	Amphiprion_percula
ENSXMAG00000028711	-	100	90.625	ENSAPEG00000008011	pcbp3	100	90.625	Amphiprion_percula
ENSXMAG00000028711	-	97	90.606	ENSATEG00000015787	-	100	89.697	Anabas_testudineus
ENSXMAG00000028711	-	95	96.785	ENSATEG00000009833	-	97	96.785	Anabas_testudineus
ENSXMAG00000028711	-	93	93.082	ENSAPLG00000002975	-	95	93.082	Anas_platyrhynchos
ENSXMAG00000028711	-	98	75.477	ENSAPLG00000008951	-	82	75.477	Anas_platyrhynchos
ENSXMAG00000028711	-	98	85.154	ENSACAG00000004607	-	99	85.154	Anolis_carolinensis
ENSXMAG00000028711	-	99	82.133	ENSACAG00000009819	-	99	81.268	Anolis_carolinensis
ENSXMAG00000028711	-	91	96.930	ENSANAG00000030702	-	96	96.930	Aotus_nancymaae
ENSXMAG00000028711	-	100	89.773	ENSACLG00000011835	pcbp3	100	89.773	Astatotilapia_calliptera
ENSXMAG00000028711	-	100	99.083	ENSACLG00000003801	-	100	99.083	Astatotilapia_calliptera
ENSXMAG00000028711	-	100	92.286	ENSAMXG00000003440	pcbp3	100	92.286	Astyanax_mexicanus
ENSXMAG00000028711	-	95	92.581	ENSAMXG00000013588	-	100	92.581	Astyanax_mexicanus
ENSXMAG00000028711	-	95	66.962	ENSAMXG00000001760	zgc:110045	73	67.674	Astyanax_mexicanus
ENSXMAG00000028711	-	89	97.380	ENSCAFG00020019472	-	81	97.380	Canis_lupus_dingo
ENSXMAG00000028711	-	93	97.368	ENSCSAG00000007440	-	87	97.368	Chlorocebus_sabaeus
ENSXMAG00000028711	-	99	80.460	ENSCPBG00000000733	-	77	79.545	Chrysemys_picta_bellii
ENSXMAG00000028711	-	98	93.438	ENSCPBG00000012151	-	95	93.438	Chrysemys_picta_bellii
ENSXMAG00000028711	-	100	76.389	ENSCSEG00000016984	-	94	82.128	Cynoglossus_semilaevis
ENSXMAG00000028711	-	95	93.548	ENSCSEG00000000822	pcbp3	99	93.548	Cynoglossus_semilaevis
ENSXMAG00000028711	-	100	90.341	ENSCVAG00000014482	pcbp3	100	90.341	Cyprinodon_variegatus
ENSXMAG00000028711	-	100	99.388	ENSCVAG00000005262	-	100	99.388	Cyprinodon_variegatus
ENSXMAG00000028711	-	100	92.571	ENSDARG00000054378	pcbp3	100	92.571	Danio_rerio
ENSXMAG00000028711	-	93	83.224	ENSETEG00000015988	-	95	83.224	Echinops_telfairi
ENSXMAG00000028711	-	90	70.445	ENSEBUG00000005495	pcbp3	74	70.445	Eptatretus_burgeri
ENSXMAG00000028711	-	95	80.000	ENSEBUG00000007485	-	92	82.192	Eptatretus_burgeri
ENSXMAG00000028711	-	91	73.704	ENSEBUG00000016192	pcbp3	99	73.978	Eptatretus_burgeri
ENSXMAG00000028711	-	100	90.652	ENSELUG00000003521	pcbp3	100	90.652	Esox_lucius
ENSXMAG00000028711	-	100	98.471	ENSELUG00000001560	-	91	98.471	Esox_lucius
ENSXMAG00000028711	-	93	97.039	ENSFALG00000003949	-	95	97.039	Ficedula_albicollis
ENSXMAG00000028711	-	98	75.749	ENSFALG00000004411	-	77	75.749	Ficedula_albicollis
ENSXMAG00000028711	-	97	92.744	ENSFHEG00000016615	pcbp3	97	92.744	Fundulus_heteroclitus
ENSXMAG00000028711	-	95	96.785	ENSFHEG00000006539	-	97	96.785	Fundulus_heteroclitus
ENSXMAG00000028711	-	94	71.125	ENSGMOG00000008611	-	99	71.125	Gadus_morhua
ENSXMAG00000028711	-	94	81.381	ENSGMOG00000011992	pcbp3	96	81.381	Gadus_morhua
ENSXMAG00000028711	-	98	85.876	ENSGALG00000004394	-	98	89.674	Gallus_gallus
ENSXMAG00000028711	-	97	83.636	ENSGALG00000013155	-	99	82.727	Gallus_gallus
ENSXMAG00000028711	-	98	87.059	ENSGAFG00000011430	pcbp3	97	86.176	Gambusia_affinis
ENSXMAG00000028711	-	100	99.694	ENSGAFG00000010274	-	100	99.694	Gambusia_affinis
ENSXMAG00000028711	-	95	92.145	ENSGACG00000002266	-	97	92.145	Gasterosteus_aculeatus
ENSXMAG00000028711	-	100	79.339	ENSGACG00000014955	-	100	79.339	Gasterosteus_aculeatus
ENSXMAG00000028711	-	89	89.513	ENSGAGG00000000271	-	100	89.513	Gopherus_agassizii
ENSXMAG00000028711	-	76	87.368	ENSGAGG00000006956	-	77	90.270	Gopherus_agassizii
ENSXMAG00000028711	-	100	99.083	ENSHBUG00000021782	-	100	99.083	Haplochromis_burtoni
ENSXMAG00000028711	-	100	89.773	ENSHBUG00000010697	pcbp3	98	94.194	Haplochromis_burtoni
ENSXMAG00000028711	-	100	90.598	ENSHCOG00000017868	pcbp3	100	90.598	Hippocampus_comes
ENSXMAG00000028711	-	95	93.569	ENSHCOG00000006067	-	97	93.569	Hippocampus_comes
ENSXMAG00000028711	-	100	91.343	ENSIPUG00000006238	pcbp3	97	95.498	Ictalurus_punctatus
ENSXMAG00000028711	-	100	98.471	ENSKMAG00000018530	-	100	98.471	Kryptolebias_marmoratus
ENSXMAG00000028711	-	100	90.625	ENSKMAG00000003046	pcbp3	100	90.625	Kryptolebias_marmoratus
ENSXMAG00000028711	-	96	93.610	ENSLBEG00000006201	pcbp3	96	93.610	Labrus_bergylta
ENSXMAG00000028711	-	100	83.133	ENSLBEG00000006542	-	100	83.133	Labrus_bergylta
ENSXMAG00000028711	-	97	81.267	ENSLACG00000010386	pcbp3	77	81.267	Latimeria_chalumnae
ENSXMAG00000028711	-	99	75.135	ENSLACG00000010804	zgc:110045	78	75.135	Latimeria_chalumnae
ENSXMAG00000028711	-	95	81.571	ENSLOCG00000005058	zgc:110045	80	83.486	Lepisosteus_oculatus
ENSXMAG00000028711	-	98	89.181	ENSLOCG00000009369	pcbp3	99	89.181	Lepisosteus_oculatus
ENSXMAG00000028711	-	95	94.516	ENSMAMG00000022336	pcbp3	93	94.516	Mastacembelus_armatus
ENSXMAG00000028711	-	100	90.533	ENSMAMG00000011620	-	97	95.498	Mastacembelus_armatus
ENSXMAG00000028711	-	100	89.349	ENSMZEG00005014882	-	100	89.941	Maylandia_zebra
ENSXMAG00000028711	-	100	88.000	ENSMZEG00005008993	pcbp3	100	88.000	Maylandia_zebra
ENSXMAG00000028711	-	95	79.420	ENSMGAG00000001883	-	96	81.556	Meleagris_gallopavo
ENSXMAG00000028711	-	99	75.067	ENSMGAG00000006794	-	78	75.067	Meleagris_gallopavo
ENSXMAG00000028711	-	95	93.590	ENSMMOG00000000730	pcbp3	88	93.590	Mola_mola
ENSXMAG00000028711	-	100	91.642	ENSMMOG00000005216	-	97	96.141	Mola_mola
ENSXMAG00000028711	-	74	80.841	ENSMODG00000027884	-	93	79.439	Monodelphis_domestica
ENSXMAG00000028711	-	100	88.319	ENSMALG00000000691	pcbp3	100	88.319	Monopterus_albus
ENSXMAG00000028711	-	98	82.235	ENSMPUG00000001779	-	88	84.568	Mustela_putorius_furo
ENSXMAG00000028711	-	100	89.941	ENSNBRG00000016714	-	100	89.941	Neolamprologus_brichardi
ENSXMAG00000028711	-	100	88.000	ENSNBRG00000016409	-	100	88.000	Neolamprologus_brichardi
ENSXMAG00000028711	-	96	85.756	ENSOPRG00000003431	-	99	85.756	Ochotona_princeps
ENSXMAG00000028711	-	97	84.943	ENSONIG00000012122	-	98	84.986	Oreochromis_niloticus
ENSXMAG00000028711	-	95	98.714	ENSONIG00000004611	-	97	98.714	Oreochromis_niloticus
ENSXMAG00000028711	-	93	96.711	ENSOCUG00000002696	-	87	96.711	Oryctolagus_cuniculus
ENSXMAG00000028711	-	95	97.419	ENSORLG00000000059	pcbp3	100	97.419	Oryzias_latipes
ENSXMAG00000028711	-	99	98.773	ENSORLG00000022739	-	99	98.773	Oryzias_latipes
ENSXMAG00000028711	-	99	98.466	ENSORLG00020006124	-	99	98.466	Oryzias_latipes_hni
ENSXMAG00000028711	-	95	97.419	ENSORLG00020012671	pcbp3	97	97.419	Oryzias_latipes_hni
ENSXMAG00000028711	-	95	97.419	ENSORLG00015000429	pcbp3	97	97.419	Oryzias_latipes_hsok
ENSXMAG00000028711	-	99	98.773	ENSORLG00015008051	-	99	98.773	Oryzias_latipes_hsok
ENSXMAG00000028711	-	90	96.441	ENSOMEG00000020811	pcbp3	97	96.441	Oryzias_melastigma
ENSXMAG00000028711	-	95	98.714	ENSOMEG00000020162	-	97	98.714	Oryzias_melastigma
ENSXMAG00000028711	-	98	83.565	ENSOGAG00000008044	-	99	83.008	Otolemur_garnettii
ENSXMAG00000028711	-	77	84.211	ENSPKIG00000020913	-	81	88.333	Paramormyrops_kingsleyae
ENSXMAG00000028711	-	100	97.859	ENSPKIG00000019329	pcbp3	100	97.859	Paramormyrops_kingsleyae
ENSXMAG00000028711	-	94	77.778	ENSPSIG00000008350	-	72	77.778	Pelodiscus_sinensis
ENSXMAG00000028711	-	94	82.822	ENSPSIG00000014970	-	97	83.436	Pelodiscus_sinensis
ENSXMAG00000028711	-	100	90.571	ENSPMGG00000022383	pcbp3	100	90.571	Periophthalmus_magnuspinnatus
ENSXMAG00000028711	-	94	74.522	ENSPMAG00000004551	pcbp3	90	74.522	Petromyzon_marinus
ENSXMAG00000028711	-	76	88.830	ENSPMAG00000004637	-	97	88.830	Petromyzon_marinus
ENSXMAG00000028711	-	98	88.596	ENSPCIG00000028092	-	96	91.705	Phascolarctos_cinereus
ENSXMAG00000028711	-	98	85.960	ENSPLAG00000011449	pcbp3	100	76.250	Poecilia_latipinna
ENSXMAG00000028711	-	99	92.308	ENSPLAG00000004074	-	92	92.308	Poecilia_latipinna
ENSXMAG00000028711	-	100	89.831	ENSPMEG00000021239	pcbp3	100	89.831	Poecilia_mexicana
ENSXMAG00000028711	-	99	95.588	ENSPMEG00000006653	-	99	95.588	Poecilia_mexicana
ENSXMAG00000028711	-	100	92.836	ENSPREG00000020585	-	97	96.785	Poecilia_reticulata
ENSXMAG00000028711	-	95	92.628	ENSPREG00000015736	pcbp3	99	92.628	Poecilia_reticulata
ENSXMAG00000028711	-	95	94.516	ENSPNYG00000012326	pcbp3	95	94.516	Pundamilia_nyererei
ENSXMAG00000028711	-	100	91.940	ENSPNYG00000013205	-	97	96.141	Pundamilia_nyererei
ENSXMAG00000028711	-	95	98.392	ENSPNAG00000015104	pcbp3	97	98.392	Pygocentrus_nattereri
ENSXMAG00000028711	-	100	88.604	ENSPNAG00000008541	-	98	93.182	Pygocentrus_nattereri
ENSXMAG00000028711	-	93	97.368	ENSRNOG00000001245	Pcbp3	95	97.368	Rattus_norvegicus
ENSXMAG00000028711	-	93	85.443	ENSRBIG00000028177	-	99	77.174	Rhinopithecus_bieti
ENSXMAG00000028711	-	93	91.049	ENSSHAG00000007890	-	96	91.049	Sarcophilus_harrisii
ENSXMAG00000028711	-	100	90.000	ENSSFOG00015014706	pcbp3	100	90.000	Scleropages_formosus
ENSXMAG00000028711	-	100	98.471	ENSSFOG00015010205	pcbp3	100	98.471	Scleropages_formosus
ENSXMAG00000028711	-	92	85.430	ENSSFOG00015007118	-	93	85.430	Scleropages_formosus
ENSXMAG00000028711	-	100	98.777	ENSSMAG00000003135	-	100	98.777	Scophthalmus_maximus
ENSXMAG00000028711	-	95	94.839	ENSSMAG00000011929	pcbp3	97	94.839	Scophthalmus_maximus
ENSXMAG00000028711	-	97	90.881	ENSSDUG00000011608	pcbp3	99	89.970	Seriola_dumerili
ENSXMAG00000028711	-	100	93.333	ENSSDUG00000008502	-	100	93.333	Seriola_dumerili
ENSXMAG00000028711	-	97	90.881	ENSSLDG00000008518	pcbp3	99	89.970	Seriola_lalandi_dorsalis
ENSXMAG00000028711	-	100	99.694	ENSSLDG00000020161	-	100	99.694	Seriola_lalandi_dorsalis
ENSXMAG00000028711	-	95	77.937	ENSSPUG00000013214	-	90	84.080	Sphenodon_punctatus
ENSXMAG00000028711	-	100	78.286	ENSSPAG00000023341	-	100	78.286	Stegastes_partitus
ENSXMAG00000028711	-	91	95.053	ENSSPAG00000004190	-	97	95.053	Stegastes_partitus
ENSXMAG00000028711	-	93	90.461	ENSTGUG00000008158	-	96	90.461	Taeniopygia_guttata
ENSXMAG00000028711	-	93	87.963	ENSTGUG00000003316	-	96	87.963	Taeniopygia_guttata
ENSXMAG00000028711	-	91	99.281	ENSTRUG00000006280	-	89	99.281	Takifugu_rubripes
ENSXMAG00000028711	-	100	92.059	ENSTRUG00000013604	pcbp3	100	92.059	Takifugu_rubripes
ENSXMAG00000028711	-	98	84.270	ENSTTRG00000015075	-	99	84.831	Tursiops_truncatus
ENSXMAG00000028711	-	90	78.248	ENSXETG00000010491	pcbp2	77	74.504	Xenopus_tropicalis
ENSXMAG00000028711	-	93	89.506	ENSXETG00000011483	pcbp1	96	89.506	Xenopus_tropicalis
ENSXMAG00000028711	-	100	89.831	ENSXCOG00000020481	pcbp3	100	89.831	Xiphophorus_couchianus
ENSXMAG00000028711	-	100	90.625	ENSXMAG00000008175	pcbp3	100	90.625	Xiphophorus_maculatus