EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000029317 (Gene tree)
Gene ID: 102228872
Gene Symbol: si:dkey-34d22.5
Alias: -
Full Name: ras-related protein Rab-39B
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Plus strand
Length: 6278 bases
Position: chr3:6414964-6421241
Accession: 102228872
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000027280	MMR_HSR1	PF01926.23	0.00012	1	1
ENSXMAP00000034363	MMR_HSR1	PF01926.23	0.00012	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000039962	-	4178	-	ENSXMAP00000027280	222 (aa)	-	UPI0003B67006
ENSXMAT00000027630	-	3993	XM_023331098	ENSXMAP00000034363	222 (aa)	XP_023186866	UPI0003B67006

Gene Model

Click here to download ENSXMAG00000029317's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000029317's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000029317	si:dkey-34d22.5	100	86.036	ENSACIG00000016958	si:dkey-34d22.5	100	86.036	Amphilophus_citrinellus
ENSXMAG00000029317	si:dkey-34d22.5	100	85.135	ENSATEG00000010784	si:dkey-34d22.5	86	85.135	Anabas_testudineus
ENSXMAG00000029317	si:dkey-34d22.5	90	62.814	ENSCPBG00000011236	-	91	62.814	Chrysemys_picta_bellii
ENSXMAG00000029317	si:dkey-34d22.5	100	72.973	ENSCSEG00000019183	si:dkey-34d22.5	100	72.973	Cynoglossus_semilaevis
ENSXMAG00000029317	si:dkey-34d22.5	100	90.991	ENSCVAG00000017064	si:dkey-34d22.5	100	90.991	Cyprinodon_variegatus
ENSXMAG00000029317	si:dkey-34d22.5	83	48.649	ENSDARG00000100379	si:dkey-34d22.2	99	48.649	Danio_rerio
ENSXMAG00000029317	si:dkey-34d22.5	97	57.407	ENSFALG00000001373	-	97	57.407	Ficedula_albicollis
ENSXMAG00000029317	si:dkey-34d22.5	100	91.928	ENSFHEG00000012041	si:dkey-34d22.5	100	91.928	Fundulus_heteroclitus
ENSXMAG00000029317	si:dkey-34d22.5	86	60.938	ENSGALG00000000994	-	90	60.938	Gallus_gallus
ENSXMAG00000029317	si:dkey-34d22.5	100	98.198	ENSGAFG00000008183	si:dkey-34d22.5	100	98.198	Gambusia_affinis
ENSXMAG00000029317	si:dkey-34d22.5	94	58.173	ENSGAGG00000004918	-	100	58.173	Gopherus_agassizii
ENSXMAG00000029317	si:dkey-34d22.5	99	73.303	ENSHCOG00000015692	si:dkey-34d22.5	99	73.303	Hippocampus_comes
ENSXMAG00000029317	si:dkey-34d22.5	100	86.486	ENSKMAG00000012778	si:dkey-34d22.5	100	86.486	Kryptolebias_marmoratus
ENSXMAG00000029317	si:dkey-34d22.5	99	81.448	ENSLBEG00000002926	si:dkey-34d22.5	100	81.448	Labrus_bergylta
ENSXMAG00000029317	si:dkey-34d22.5	98	58.257	ENSLACG00000012674	si:dkey-34d22.5	99	58.257	Latimeria_chalumnae
ENSXMAG00000029317	si:dkey-34d22.5	98	66.359	ENSLOCG00000003467	si:dkey-34d22.5	98	69.124	Lepisosteus_oculatus
ENSXMAG00000029317	si:dkey-34d22.5	100	79.279	ENSMMOG00000006846	si:dkey-34d22.5	100	79.279	Mola_mola
ENSXMAG00000029317	si:dkey-34d22.5	100	81.081	ENSMALG00000013152	si:dkey-34d22.5	100	81.081	Monopterus_albus
ENSXMAG00000029317	si:dkey-34d22.5	99	84.615	ENSORLG00000014099	si:dkey-34d22.5	99	84.615	Oryzias_latipes
ENSXMAG00000029317	si:dkey-34d22.5	99	84.163	ENSORLG00020020277	si:dkey-34d22.5	99	84.163	Oryzias_latipes_hni
ENSXMAG00000029317	si:dkey-34d22.5	99	84.615	ENSORLG00015000142	si:dkey-34d22.5	99	84.615	Oryzias_latipes_hsok
ENSXMAG00000029317	si:dkey-34d22.5	91	89.604	ENSOMEG00000017958	si:dkey-34d22.5	99	86.425	Oryzias_melastigma
ENSXMAG00000029317	si:dkey-34d22.5	97	72.685	ENSPKIG00000021209	si:dkey-34d22.5	99	72.685	Paramormyrops_kingsleyae
ENSXMAG00000029317	si:dkey-34d22.5	91	61.692	ENSPSIG00000006606	-	99	61.692	Pelodiscus_sinensis
ENSXMAG00000029317	si:dkey-34d22.5	99	81.900	ENSPMGG00000001298	-	99	81.900	Periophthalmus_magnuspinnatus
ENSXMAG00000029317	si:dkey-34d22.5	89	59.898	ENSPCIG00000022399	-	88	59.898	Phascolarctos_cinereus
ENSXMAG00000029317	si:dkey-34d22.5	100	96.847	ENSPFOG00000014499	si:dkey-34d22.5	100	96.847	Poecilia_formosa
ENSXMAG00000029317	si:dkey-34d22.5	100	96.847	ENSPLAG00000007773	si:dkey-34d22.5	100	96.847	Poecilia_latipinna
ENSXMAG00000029317	si:dkey-34d22.5	100	96.847	ENSPMEG00000012932	si:dkey-34d22.5	100	96.847	Poecilia_mexicana
ENSXMAG00000029317	si:dkey-34d22.5	89	58.883	ENSSHAG00000008520	-	88	58.883	Sarcophilus_harrisii
ENSXMAG00000029317	si:dkey-34d22.5	97	68.837	ENSSFOG00015012088	rab42	96	68.837	Scleropages_formosus
ENSXMAG00000029317	si:dkey-34d22.5	100	86.937	ENSSLDG00000002646	si:dkey-34d22.5	100	86.937	Seriola_lalandi_dorsalis
ENSXMAG00000029317	si:dkey-34d22.5	99	86.425	ENSSPAG00000012955	si:dkey-34d22.5	99	86.425	Stegastes_partitus
ENSXMAG00000029317	si:dkey-34d22.5	93	49.515	ENSXETG00000020622	rab39a	98	49.515	Xenopus_tropicalis
ENSXMAG00000029317	si:dkey-34d22.5	100	100.000	ENSXCOG00000008410	si:dkey-34d22.5	100	100.000	Xiphophorus_couchianus