EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSXMAG00000029918 (Gene tree)
Gene ID: 102233218
Gene Symbol: trnau1apb
Alias: secp43|trnau1ap|trnau1apl|trspap1|wu:fa56b07|wu:fc12c07|wu:fc69f09|zgc:113964|zgc:77884
Full Name: tRNA selenocysteine 1-associated protein 1-like
Gene Type: protein_coding
Species: Xiphophorus_maculatus
Status: putative
Strand: Minus strand
Length: 9270 bases
Position: chr6:10101043-10110312
Accession: 102233218
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSXMAP00000035099	RRM_1	PF00076.22	1.8e-31	1	2
ENSXMAP00000035099	RRM_1	PF00076.22	1.8e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSXMAT00000037855	-	4847	XM_005797055	ENSXMAP00000035099	344 (aa)	XP_005797112	UPI0003B79151

Gene Model

Click here to download ENSXMAG00000029918's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000029918's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSXMAG00000029918	trnau1apb	99	74.636	ENSAPOG00000010086	trnau1apb	100	76.453	Acanthochromis_polyacanthus
ENSXMAG00000029918	trnau1apb	99	78.841	ENSACIG00000001863	trnau1apb	100	77.746	Amphilophus_citrinellus
ENSXMAG00000029918	trnau1apb	99	84.393	ENSAOCG00000011891	trnau1apb	100	82.759	Amphiprion_ocellaris
ENSXMAG00000029918	trnau1apb	99	73.333	ENSAPEG00000008029	trnau1apb	100	83.237	Amphiprion_percula
ENSXMAG00000029918	trnau1apb	99	83.815	ENSATEG00000002196	trnau1apb	100	81.897	Anabas_testudineus
ENSXMAG00000029918	trnau1apb	99	78.223	ENSACLG00000003016	trnau1apb	100	77.364	Astatotilapia_calliptera
ENSXMAG00000029918	trnau1apb	99	62.281	ENSAMXG00000001805	trnau1apb	99	62.573	Astyanax_mexicanus
ENSXMAG00000029918	trnau1apb	99	79.539	ENSCSEG00000018215	trnau1apb	98	80.826	Cynoglossus_semilaevis
ENSXMAG00000029918	trnau1apb	95	89.297	ENSCVAG00000017866	trnau1apb	100	89.297	Cyprinodon_variegatus
ENSXMAG00000029918	trnau1apb	99	60.234	ENSDARG00000056475	trnau1apb	98	61.290	Danio_rerio
ENSXMAG00000029918	trnau1apb	99	61.850	ENSELUG00000016683	trnau1apb	99	63.689	Esox_lucius
ENSXMAG00000029918	trnau1apb	100	92.442	ENSFHEG00000001267	trnau1apb	100	92.442	Fundulus_heteroclitus
ENSXMAG00000029918	trnau1apb	99	70.435	ENSGMOG00000001160	trnau1apb	100	70.725	Gadus_morhua
ENSXMAG00000029918	trnau1apb	99	70.231	ENSGAFG00000006770	trnau1apb	100	80.980	Gambusia_affinis
ENSXMAG00000029918	trnau1apb	99	74.855	ENSGACG00000014944	trnau1apb	100	75.434	Gasterosteus_aculeatus
ENSXMAG00000029918	trnau1apb	71	39.271	ENSGAGG00000022384	-	78	38.956	Gopherus_agassizii
ENSXMAG00000029918	trnau1apb	100	85.014	ENSHBUG00000018944	trnau1apb	100	83.381	Haplochromis_burtoni
ENSXMAG00000029918	trnau1apb	66	80.786	ENSHCOG00000011350	trnau1apb	78	78.947	Hippocampus_comes
ENSXMAG00000029918	trnau1apb	99	59.884	ENSIPUG00000008843	tsp1l	99	63.050	Ictalurus_punctatus
ENSXMAG00000029918	trnau1apb	63	91.818	ENSKMAG00000010082	trnau1apb	100	86.994	Kryptolebias_marmoratus
ENSXMAG00000029918	trnau1apb	99	79.130	ENSLBEG00000020480	trnau1apb	100	78.551	Labrus_bergylta
ENSXMAG00000029918	trnau1apb	99	51.282	ENSLOCG00000013175	trnau1apb	99	50.716	Lepisosteus_oculatus
ENSXMAG00000029918	trnau1apb	99	82.948	ENSMAMG00000012192	trnau1apb	100	84.104	Mastacembelus_armatus
ENSXMAG00000029918	trnau1apb	100	85.014	ENSMZEG00005014852	trnau1apb	100	83.381	Maylandia_zebra
ENSXMAG00000029918	trnau1apb	71	38.800	ENSMGAG00000003234	-	98	38.956	Meleagris_gallopavo
ENSXMAG00000029918	trnau1apb	97	72.779	ENSMMOG00000021521	trnau1apb	100	72.779	Mola_mola
ENSXMAG00000029918	trnau1apb	99	72.434	ENSMALG00000003772	trnau1apb	100	72.303	Monopterus_albus
ENSXMAG00000029918	trnau1apb	97	78.171	ENSNBRG00000000751	trnau1apb	99	77.286	Neolamprologus_brichardi
ENSXMAG00000029918	trnau1apb	99	73.684	ENSONIG00000016639	trnau1apb	100	72.595	Oreochromis_niloticus
ENSXMAG00000029918	trnau1apb	100	77.457	ENSORLG00000013265	trnau1apb	100	77.457	Oryzias_latipes
ENSXMAG00000029918	trnau1apb	100	76.945	ENSORLG00020004464	trnau1apb	100	81.556	Oryzias_latipes_hni
ENSXMAG00000029918	trnau1apb	100	76.945	ENSORLG00015021098	trnau1apb	100	81.556	Oryzias_latipes_hsok
ENSXMAG00000029918	trnau1apb	100	78.963	ENSOMEG00000016531	trnau1apb	100	84.438	Oryzias_melastigma
ENSXMAG00000029918	trnau1apb	99	55.460	ENSPKIG00000007995	trnau1apb	99	59.143	Paramormyrops_kingsleyae
ENSXMAG00000029918	trnau1apb	71	40.891	ENSPSIG00000004189	-	78	40.486	Pelodiscus_sinensis
ENSXMAG00000029918	trnau1apb	78	76.987	ENSPMGG00000018509	trnau1apb	97	78.243	Periophthalmus_magnuspinnatus
ENSXMAG00000029918	trnau1apb	100	98.256	ENSPFOG00000003938	trnau1apb	100	98.256	Poecilia_formosa
ENSXMAG00000029918	trnau1apb	100	98.256	ENSPLAG00000015480	trnau1apb	100	98.256	Poecilia_latipinna
ENSXMAG00000029918	trnau1apb	100	98.256	ENSPMEG00000012743	trnau1apb	100	98.256	Poecilia_mexicana
ENSXMAG00000029918	trnau1apb	100	97.093	ENSPREG00000015035	trnau1apb	100	97.093	Poecilia_reticulata
ENSXMAG00000029918	trnau1apb	99	75.931	ENSPNYG00000012127	trnau1apb	100	75.072	Pundamilia_nyererei
ENSXMAG00000029918	trnau1apb	99	59.885	ENSPNAG00000019138	trnau1apb	98	62.463	Pygocentrus_nattereri
ENSXMAG00000029918	trnau1apb	99	58.807	ENSSFOG00015014158	trnau1apb	99	60.571	Scleropages_formosus
ENSXMAG00000029918	trnau1apb	99	79.070	ENSSMAG00000001745	trnau1apb	99	79.360	Scophthalmus_maximus
ENSXMAG00000029918	trnau1apb	99	83.768	ENSSDUG00000011109	trnau1apb	99	82.133	Seriola_dumerili
ENSXMAG00000029918	trnau1apb	99	83.478	ENSSLDG00000012947	trnau1apb	99	81.556	Seriola_lalandi_dorsalis
ENSXMAG00000029918	trnau1apb	71	34.686	ENSSPUG00000016701	-	82	36.260	Sphenodon_punctatus
ENSXMAG00000029918	trnau1apb	99	85.260	ENSSPAG00000006917	trnau1apb	100	84.195	Stegastes_partitus
ENSXMAG00000029918	trnau1apb	100	75.723	ENSTRUG00000008608	trnau1apb	100	75.216	Takifugu_rubripes
ENSXMAG00000029918	trnau1apb	99	66.276	ENSTNIG00000000916	trnau1apb	100	64.223	Tetraodon_nigroviridis
ENSXMAG00000029918	trnau1apb	94	85.494	ENSXCOG00000007974	trnau1apb	94	85.494	Xiphophorus_couchianus