EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
Description
Ensembl ID
ENSXMAG00000029988 (Gene tree)
Gene ID
102229891
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Xiphophorus_maculatus
Status
putative
Strand
Plus strand
Length
5302 bases
Position
chr21:23781074-23786375
Accession
102229891
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSXMAP00000035325LSMPF01423.225.1e-2011
ENSXMAP00000004531LSMPF01423.228.4e-1211
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSXMAT00000004536-276-ENSXMAP0000000453191 (aa)-M3ZQN8
ENSXMAT00000038736-3964XM_005810772ENSXMAP0000003532591 (aa)XP_005810829UPI0001F3576F
Gene Model
Click here to download ENSXMAG00000029988's gene model file
Pathways
Pathway IDPathway NameSource
xma03018RNA degradationKEGG
xma03040SpliceosomeKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSXMAG00000029988's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSXMAG00000029988lsm510094.505ENSG00000106355LSM510096.774Homo_sapiens
ENSXMAG00000029988lsm510097.802ENSAPOG00000020779LSM510097.802Acanthochromis_polyacanthus
ENSXMAG00000029988lsm59096.341ENSAPOG00000011743LSM5100100.000Acanthochromis_polyacanthus
ENSXMAG00000029988lsm510094.505ENSAMEG00000006700LSM510094.505Ailuropoda_melanoleuca
ENSXMAG00000029988lsm59561.628ENSACIG00000019185lsm59661.628Amphilophus_citrinellus
ENSXMAG00000029988lsm510097.802ENSAOCG00000001636lsm510097.802Amphiprion_ocellaris
ENSXMAG00000029988lsm568100.000ENSAPEG00000008201lsm5100100.000Amphiprion_percula
ENSXMAG00000029988lsm510097.802ENSAPEG00000008151lsm510097.802Amphiprion_percula
ENSXMAG00000029988lsm59098.780ENSATEG00000020470lsm510063.736Anabas_testudineus
ENSXMAG00000029988lsm58197.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSXMAG00000029988lsm56292.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSXMAG00000029988lsm510073.626ENSANAG00000037758-10073.626Aotus_nancymaae
ENSXMAG00000029988lsm59992.222ENSANAG00000024192-9492.222Aotus_nancymaae
ENSXMAG00000029988lsm510095.604ENSANAG00000034409-10095.604Aotus_nancymaae
ENSXMAG00000029988lsm595100.000ENSACLG00000012891lsm598100.000Astatotilapia_calliptera
ENSXMAG00000029988lsm510084.043ENSAMXG00000035543lsm510084.043Astyanax_mexicanus
ENSXMAG00000029988lsm510094.505ENSBTAG00000002332LSM510094.505Bos_taurus
ENSXMAG00000029988lsm55377.083ENSBTAG00000052014-6377.083Bos_taurus
ENSXMAG00000029988lsm510072.527WBGene00003079lsm-510072.527Caenorhabditis_elegans
ENSXMAG00000029988lsm59982.222ENSCJAG00000005678-10082.222Callithrix_jacchus
ENSXMAG00000029988lsm510094.505ENSCJAG00000047379LSM57892.000Callithrix_jacchus
ENSXMAG00000029988lsm510093.407ENSCAFG00000019261-10093.407Canis_familiaris
ENSXMAG00000029988lsm55790.385ENSCAFG00000030781-6090.385Canis_familiaris
ENSXMAG00000029988lsm510094.505ENSCAFG00020004946LSM510094.505Canis_lupus_dingo
ENSXMAG00000029988lsm510092.308ENSCHIG00000004079-10092.308Capra_hircus
ENSXMAG00000029988lsm58172.973ENSCHIG00000021428-9570.455Capra_hircus
ENSXMAG00000029988lsm510094.505ENSCHIG00000024539LSM510094.505Capra_hircus
ENSXMAG00000029988lsm510094.505ENSTSYG00000006449-10094.505Carlito_syrichta
ENSXMAG00000029988lsm510082.418ENSTSYG00000028728-10082.418Carlito_syrichta
ENSXMAG00000029988lsm510076.923ENSTSYG00000026530-9176.923Carlito_syrichta
ENSXMAG00000029988lsm510069.231ENSTSYG00000036637-10069.231Carlito_syrichta
ENSXMAG00000029988lsm58290.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSXMAG00000029988lsm510094.505ENSCPOG00000036386LSM510094.505Cavia_porcellus
ENSXMAG00000029988lsm510092.308ENSCCAG00000032123-10092.308Cebus_capucinus
ENSXMAG00000029988lsm510063.736ENSCCAG00000037334-10063.736Cebus_capucinus
ENSXMAG00000029988lsm510075.824ENSCCAG00000032792-10075.824Cebus_capucinus
ENSXMAG00000029988lsm510094.505ENSCCAG00000037808-10094.505Cebus_capucinus
ENSXMAG00000029988lsm510093.407ENSCCAG00000000821-10093.407Cebus_capucinus
ENSXMAG00000029988lsm59983.333ENSCATG00000014790-9590.909Cercocebus_atys
ENSXMAG00000029988lsm510094.505ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSXMAG00000029988lsm510094.505ENSCLAG00000000202LSM510094.505Chinchilla_lanigera
ENSXMAG00000029988lsm510080.220ENSCLAG00000005062-9080.220Chinchilla_lanigera
ENSXMAG00000029988lsm58294.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSXMAG00000029988lsm510094.505ENSCPBG00000013685LSM510094.505Chrysemys_picta_bellii
ENSXMAG00000029988lsm59587.209ENSCING00000020625-9787.209Ciona_intestinalis
ENSXMAG00000029988lsm59587.209ENSCSAVG00000001439-9887.209Ciona_savignyi
ENSXMAG00000029988lsm510094.505ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSXMAG00000029988lsm510094.505ENSCGRG00001015461Lsm510094.505Cricetulus_griseus_chok1gshd
ENSXMAG00000029988lsm58297.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSXMAG00000029988lsm510060.440ENSCSEG00000015286lsm510060.440Cynoglossus_semilaevis
ENSXMAG00000029988lsm5100100.000ENSCVAG00000004262lsm5100100.000Cyprinodon_variegatus
ENSXMAG00000029988lsm510096.703ENSDARG00000071573lsm510098.387Danio_rerio
ENSXMAG00000029988lsm510094.505ENSDNOG00000034958LSM510094.505Dasypus_novemcinctus
ENSXMAG00000029988lsm59683.908ENSDNOG00000049495-9683.908Dasypus_novemcinctus
ENSXMAG00000029988lsm510094.505ENSDORG00000009422Lsm510094.505Dipodomys_ordii
ENSXMAG00000029988lsm59879.775FBgn0035675CG66109879.775Drosophila_melanogaster
ENSXMAG00000029988lsm59862.921ENSETEG00000000777-9962.921Echinops_telfairi
ENSXMAG00000029988lsm510094.505ENSETEG00000018068LSM510094.505Echinops_telfairi
ENSXMAG00000029988lsm58178.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSXMAG00000029988lsm59876.404ENSETEG00000010651-9976.404Echinops_telfairi
ENSXMAG00000029988lsm59973.333ENSETEG00000001469-9973.333Echinops_telfairi
ENSXMAG00000029988lsm510093.407ENSEBUG00000008540lsm510093.407Eptatretus_burgeri
ENSXMAG00000029988lsm510094.505ENSEASG00005003500LSM510094.505Equus_asinus_asinus
ENSXMAG00000029988lsm510082.418ENSECAG00000018445LSM510082.418Equus_caballus
ENSXMAG00000029988lsm56392.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSXMAG00000029988lsm510098.901ENSELUG00000007792lsm510098.901Esox_lucius
ENSXMAG00000029988lsm510094.505ENSFCAG00000000230LSM510094.505Felis_catus
ENSXMAG00000029988lsm58497.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSXMAG00000029988lsm510094.505ENSFDAG00000008767LSM510094.505Fukomys_damarensis
ENSXMAG00000029988lsm59067.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSXMAG00000029988lsm59585.057ENSFHEG00000004011lsm59485.057Fundulus_heteroclitus
ENSXMAG00000029988lsm599100.000ENSGMOG00000018235lsm5100100.000Gadus_morhua
ENSXMAG00000029988lsm510094.505ENSGALG00000041625LSM510094.505Gallus_gallus
ENSXMAG00000029988lsm568100.000ENSGAFG00000016824lsm5100100.000Gambusia_affinis
ENSXMAG00000029988lsm510098.901ENSGACG00000005528lsm510098.901Gasterosteus_aculeatus
ENSXMAG00000029988lsm510094.505ENSGAGG00000015593LSM510094.505Gopherus_agassizii
ENSXMAG00000029988lsm510094.505ENSGGOG00000043469LSM510094.505Gorilla_gorilla
ENSXMAG00000029988lsm595100.000ENSHBUG00000013773lsm598100.000Haplochromis_burtoni
ENSXMAG00000029988lsm510094.505ENSHGLG00000011765LSM510094.505Heterocephalus_glaber_female
ENSXMAG00000029988lsm510091.209ENSHGLG00100015610LSM510091.209Heterocephalus_glaber_male
ENSXMAG00000029988lsm510060.440ENSHCOG00000008288lsm510060.440Hippocampus_comes
ENSXMAG00000029988lsm510097.802ENSIPUG00000021095LSM510097.802Ictalurus_punctatus
ENSXMAG00000029988lsm510094.505ENSSTOG00000012662LSM510094.505Ictidomys_tridecemlineatus
ENSXMAG00000029988lsm59280.233ENSSTOG00000033886-9780.233Ictidomys_tridecemlineatus
ENSXMAG00000029988lsm58787.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSXMAG00000029988lsm510067.033ENSJJAG00000016144-9267.033Jaculus_jaculus
ENSXMAG00000029988lsm510092.308ENSJJAG00000012145-10092.308Jaculus_jaculus
ENSXMAG00000029988lsm510096.703ENSKMAG00000021861lsm510096.703Kryptolebias_marmoratus
ENSXMAG00000029988lsm59098.780ENSLBEG00000009235LSM56598.780Labrus_bergylta
ENSXMAG00000029988lsm56291.071ENSLBEG00000017379lsm59291.071Labrus_bergylta
ENSXMAG00000029988lsm510095.604ENSLACG00000022448LSM510095.604Latimeria_chalumnae
ENSXMAG00000029988lsm510097.802ENSLOCG00000012903lsm510097.802Lepisosteus_oculatus
ENSXMAG00000029988lsm510094.505ENSLAFG00000029579LSM510094.505Loxodonta_africana
ENSXMAG00000029988lsm510070.330ENSLAFG00000027938-10070.330Loxodonta_africana
ENSXMAG00000029988lsm510094.505ENSMFAG00000038508LSM510094.505Macaca_fascicularis
ENSXMAG00000029988lsm510092.308ENSMFAG00000030152-10092.308Macaca_fascicularis
ENSXMAG00000029988lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSXMAG00000029988lsm59984.444ENSMMUG00000039822-10084.444Macaca_mulatta
ENSXMAG00000029988lsm55592.000ENSMMUG00000045129-7892.000Macaca_mulatta
ENSXMAG00000029988lsm510092.308ENSMMUG00000030131-10092.308Macaca_mulatta
ENSXMAG00000029988lsm510094.505ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSXMAG00000029988lsm510092.308ENSMNEG00000037935-10092.308Macaca_nemestrina
ENSXMAG00000029988lsm510094.505ENSMLEG00000024945LSM510094.505Mandrillus_leucophaeus
ENSXMAG00000029988lsm59883.146ENSMLEG00000034037-10083.146Mandrillus_leucophaeus
ENSXMAG00000029988lsm510091.209ENSMAMG00000012869lsm510091.209Mastacembelus_armatus
ENSXMAG00000029988lsm595100.000ENSMZEG00005019554lsm598100.000Maylandia_zebra
ENSXMAG00000029988lsm510094.505ENSMGAG00000012117LSM510094.505Meleagris_gallopavo
ENSXMAG00000029988lsm510094.505ENSMAUG00000012222Lsm510094.505Mesocricetus_auratus
ENSXMAG00000029988lsm510093.407ENSMAUG00000008132-10093.407Mesocricetus_auratus
ENSXMAG00000029988lsm59973.333ENSMICG00000033928-9673.333Microcebus_murinus
ENSXMAG00000029988lsm510094.505ENSMICG00000005353LSM510094.505Microcebus_murinus
ENSXMAG00000029988lsm510094.505ENSMOCG00000012018Lsm510094.505Microtus_ochrogaster
ENSXMAG00000029988lsm584100.000ENSMMOG00000004026lsm587100.000Mola_mola
ENSXMAG00000029988lsm56896.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSXMAG00000029988lsm56893.548ENSMALG00000010343lsm510093.548Monopterus_albus
ENSXMAG00000029988lsm510094.505MGP_CAROLIEiJ_G0028421Lsm510094.505Mus_caroli
ENSXMAG00000029988lsm510094.505ENSMUSG00000091625Lsm510094.505Mus_musculus
ENSXMAG00000029988lsm510094.505MGP_PahariEiJ_G0022171Lsm510094.505Mus_pahari
ENSXMAG00000029988lsm510094.505MGP_SPRETEiJ_G0029423Lsm510094.505Mus_spretus
ENSXMAG00000029988lsm510094.505ENSMLUG00000017028LSM510094.505Myotis_lucifugus
ENSXMAG00000029988lsm510094.505ENSNGAG00000024142Lsm510094.505Nannospalax_galili
ENSXMAG00000029988lsm59974.444ENSNGAG00000022569-9674.444Nannospalax_galili
ENSXMAG00000029988lsm510082.796ENSNGAG00000017707-10082.796Nannospalax_galili
ENSXMAG00000029988lsm56398.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSXMAG00000029988lsm510094.505ENSNLEG00000015268LSM510094.505Nomascus_leucogenys
ENSXMAG00000029988lsm58297.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSXMAG00000029988lsm510094.505ENSODEG00000008258-10094.505Octodon_degus
ENSXMAG00000029988lsm510094.505ENSODEG00000019072-10094.505Octodon_degus
ENSXMAG00000029988lsm58260.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSXMAG00000029988lsm510094.505ENSOCUG00000029043LSM510094.505Oryctolagus_cuniculus
ENSXMAG00000029988lsm510096.703ENSORLG00000027725lsm55896.703Oryzias_latipes
ENSXMAG00000029988lsm59693.103ENSORLG00020003019lsm58693.103Oryzias_latipes_hni
ENSXMAG00000029988lsm510096.703ENSORLG00015003338lsm510096.703Oryzias_latipes_hsok
ENSXMAG00000029988lsm510095.604ENSOMEG00000001078lsm510095.604Oryzias_melastigma
ENSXMAG00000029988lsm510094.505ENSOGAG00000013892LSM510094.505Otolemur_garnettii
ENSXMAG00000029988lsm510094.505ENSOARG00000006944LSM510094.505Ovis_aries
ENSXMAG00000029988lsm510094.505ENSPPAG00000003697-10094.505Pan_paniscus
ENSXMAG00000029988lsm510094.505ENSPPRG00000002550LSM510094.505Panthera_pardus
ENSXMAG00000029988lsm510094.505ENSPTIG00000015604LSM510094.505Panthera_tigris_altaica
ENSXMAG00000029988lsm510094.505ENSPTRG00000019057LSM510094.505Pan_troglodytes
ENSXMAG00000029988lsm510082.418ENSPTRG00000049488-10082.418Pan_troglodytes
ENSXMAG00000029988lsm510094.505ENSPANG00000032179-10094.505Papio_anubis
ENSXMAG00000029988lsm59984.444ENSPANG00000032538-10084.444Papio_anubis
ENSXMAG00000029988lsm510091.209ENSPANG00000033477-10091.209Papio_anubis
ENSXMAG00000029988lsm510097.802ENSPKIG00000011910lsm510097.802Paramormyrops_kingsleyae
ENSXMAG00000029988lsm58197.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSXMAG00000029988lsm568100.000ENSPMGG00000011699lsm5100100.000Periophthalmus_magnuspinnatus
ENSXMAG00000029988lsm55291.489ENSPEMG00000019994-8884.615Peromyscus_maniculatus_bairdii
ENSXMAG00000029988lsm510067.033ENSPEMG00000022375-10067.033Peromyscus_maniculatus_bairdii
ENSXMAG00000029988lsm5100100.000ENSPFOG00000001433lsm5100100.000Poecilia_formosa
ENSXMAG00000029988lsm5100100.000ENSPLAG00000009665lsm5100100.000Poecilia_latipinna
ENSXMAG00000029988lsm5100100.000ENSPMEG00000022265lsm5100100.000Poecilia_mexicana
ENSXMAG00000029988lsm568100.000ENSPREG00000022452lsm5100100.000Poecilia_reticulata
ENSXMAG00000029988lsm510091.209ENSPPYG00000017661LSM510091.209Pongo_abelii
ENSXMAG00000029988lsm58995.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSXMAG00000029988lsm510094.505ENSPVAG00000009786LSM510094.505Pteropus_vampyrus
ENSXMAG00000029988lsm595100.000ENSPNYG00000022236lsm598100.000Pundamilia_nyererei
ENSXMAG00000029988lsm510097.802ENSPNAG00000001887lsm510097.802Pygocentrus_nattereri
ENSXMAG00000029988lsm510091.304ENSRNOG00000027305AABR07065089.110091.304Rattus_norvegicus
ENSXMAG00000029988lsm510094.505ENSRNOG00000042126Lsm510094.505Rattus_norvegicus
ENSXMAG00000029988lsm510094.505ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSXMAG00000029988lsm510094.505ENSRBIG00000030714-10094.505Rhinopithecus_bieti
ENSXMAG00000029988lsm510093.407ENSRBIG00000024431-10093.407Rhinopithecus_bieti
ENSXMAG00000029988lsm510094.505ENSRBIG00000030340-10094.505Rhinopithecus_bieti
ENSXMAG00000029988lsm510094.505ENSRROG00000023884-10094.505Rhinopithecus_roxellana
ENSXMAG00000029988lsm510094.505ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSXMAG00000029988lsm510094.505ENSRROG00000004655-10094.505Rhinopithecus_roxellana
ENSXMAG00000029988lsm58548.780YER146W-8848.780Saccharomyces_cerevisiae
ENSXMAG00000029988lsm510072.527ENSSBOG00000034794-10072.527Saimiri_boliviensis_boliviensis
ENSXMAG00000029988lsm510094.505ENSSBOG00000012312LSM510094.505Saimiri_boliviensis_boliviensis
ENSXMAG00000029988lsm510092.308ENSSBOG00000019124-10092.308Saimiri_boliviensis_boliviensis
ENSXMAG00000029988lsm510097.802ENSSFOG00015010099lsm510097.802Scleropages_formosus
ENSXMAG00000029988lsm510062.637ENSSMAG00000007895lsm510062.637Scophthalmus_maximus
ENSXMAG00000029988lsm568100.000ENSSDUG00000010762lsm5100100.000Seriola_dumerili
ENSXMAG00000029988lsm58676.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSXMAG00000029988lsm510098.901ENSSLDG00000025242lsm510098.901Seriola_lalandi_dorsalis
ENSXMAG00000029988lsm510065.934ENSSARG00000003330LSM510065.934Sorex_araneus
ENSXMAG00000029988lsm510092.308ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSXMAG00000029988lsm510061.538ENSSPAG00000005435lsm510061.538Stegastes_partitus
ENSXMAG00000029988lsm57684.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSXMAG00000029988lsm510094.505ENSSSCG00000026064-10094.505Sus_scrofa
ENSXMAG00000029988lsm510093.407ENSTGUG00000017539LSM510093.407Taeniopygia_guttata
ENSXMAG00000029988lsm58590.244ENSTRUG00000017749lsm56490.244Takifugu_rubripes
ENSXMAG00000029988lsm59598.837ENSTNIG00000008695lsm59898.837Tetraodon_nigroviridis
ENSXMAG00000029988lsm510094.505ENSTBEG00000004876LSM510094.505Tupaia_belangeri
ENSXMAG00000029988lsm510094.505ENSTTRG00000004237LSM510094.505Tursiops_truncatus
ENSXMAG00000029988lsm55592.000ENSUAMG00000009786LSM56592.000Ursus_americanus
ENSXMAG00000029988lsm510093.407ENSUMAG00000002625LSM56593.407Ursus_maritimus
ENSXMAG00000029988lsm510094.505ENSVPAG00000009985LSM510094.505Vicugna_pacos
ENSXMAG00000029988lsm510094.505ENSVVUG00000021311LSM510094.505Vulpes_vulpes
ENSXMAG00000029988lsm59093.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSXMAG00000029988lsm568100.000ENSXCOG00000015348lsm5100100.000Xiphophorus_couchianus

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