EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0000212 (Gene tree)
Gene ID: 39744
Gene Symbol: brm
Alias: -
Full Name: brahma
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 12788 bases
Position: chr3L:15970082-15982869
Accession: FBgn0000212
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0075278	ResIII	PF04851.15	4e-08	1	1
FBpp0075279	ResIII	PF04851.15	4e-08	1	1
FBpp0075280	ResIII	PF04851.15	4e-08	1	1
FBpp0075281	ResIII	PF04851.15	4e-08	1	1
FBpp0305757	ResIII	PF04851.15	4e-08	1	1
FBpp0303193	ResIII	PF04851.15	4e-08	1	1
FBpp0075278	BRK	PF07533.16	6.4e-18	1	1
FBpp0075279	BRK	PF07533.16	6.4e-18	1	1
FBpp0075280	BRK	PF07533.16	6.4e-18	1	1
FBpp0075281	BRK	PF07533.16	6.4e-18	1	1
FBpp0305757	BRK	PF07533.16	6.5e-18	1	1
FBpp0303193	BRK	PF07533.16	6.5e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0330160	-	5339	-	FBpp0303193	1658 (aa)	-	M9PFS6
FBtr0333580	-	5351	-	FBpp0305757	1642 (aa)	-	M9PFM5
FBtr0075523	-	5327	-	FBpp0075278	1634 (aa)	-	P25439-2
FBtr0075526	-	5553	-	FBpp0075281	1638 (aa)	-	P25439
FBtr0075524	-	5322	-	FBpp0075279	1634 (aa)	-	P25439-2
FBtr0075525	-	5339	-	FBpp0075280	1638 (aa)	-	P25439

Gene Model

Click here to download FBgn0000212's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0000212's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0000212	brm	71	56.866	ENSG00000080503	SMARCA2	97	92.000	Homo_sapiens
FBgn0000212	brm	76	59.719	ENSAPOG00000002641	SMARCA2	80	62.791	Acanthochromis_polyacanthus
FBgn0000212	brm	70	62.855	ENSAMEG00000012325	SMARCA2	96	59.123	Ailuropoda_melanoleuca
FBgn0000212	brm	72	60.591	ENSACIG00000015607	SMARCA2	78	61.582	Amphilophus_citrinellus
FBgn0000212	brm	83	56.774	ENSAOCG00000009647	-	79	61.645	Amphiprion_ocellaris
FBgn0000212	brm	76	59.767	ENSAPEG00000007646	SMARCA2	79	62.801	Amphiprion_percula
FBgn0000212	brm	90	53.160	ENSANAG00000026498	SMARCA2	81	59.938	Aotus_nancymaae
FBgn0000212	brm	72	61.589	ENSACLG00000004248	SMARCA2	77	62.231	Astatotilapia_calliptera
FBgn0000212	brm	91	53.407	ENSAMXG00000012404	smarca2	81	58.537	Astyanax_mexicanus
FBgn0000212	brm	90	53.567	ENSCJAG00000010710	SMARCA2	77	62.222	Callithrix_jacchus
FBgn0000212	brm	90	55.202	ENSCAFG00000002013	SMARCA2	81	60.325	Canis_familiaris
FBgn0000212	brm	70	63.731	ENSCAFG00020026802	SMARCA2	94	61.800	Canis_lupus_dingo
FBgn0000212	brm	90	51.158	ENSTSYG00000003858	SMARCA2	80	60.170	Carlito_syrichta
FBgn0000212	brm	71	62.773	ENSCPOG00000005475	SMARCA2	81	60.078	Cavia_porcellus
FBgn0000212	brm	90	53.516	ENSCCAG00000030636	SMARCA2	81	57.353	Cebus_capucinus
FBgn0000212	brm	93	49.686	ENSCATG00000031470	SMARCA2	81	60.154	Cercocebus_atys
FBgn0000212	brm	71	62.932	ENSCLAG00000014484	SMARCA2	79	58.960	Chinchilla_lanigera
FBgn0000212	brm	90	53.871	ENSCPBG00000025463	SMARCA2	85	59.626	Chrysemys_picta_bellii
FBgn0000212	brm	71	62.932	ENSCANG00000039597	SMARCA2	81	60.247	Colobus_angolensis_palliatus
FBgn0000212	brm	70	58.673	ENSCGRG00001002323	Smarca2	79	56.439	Cricetulus_griseus_chok1gshd
FBgn0000212	brm	72	58.716	ENSCSEG00000019311	SMARCA2	76	59.189	Cynoglossus_semilaevis
FBgn0000212	brm	62	64.951	ENSCVAG00000016571	SMARCA2	77	64.212	Cyprinodon_variegatus
FBgn0000212	brm	86	54.496	ENSDARG00000008904	smarca2	77	62.264	Danio_rerio
FBgn0000212	brm	71	62.848	ENSDORG00000014832	Smarca2	81	58.555	Dipodomys_ordii
FBgn0000212	brm	69	54.034	ENSEBUG00000002449	-	85	54.605	Eptatretus_burgeri
FBgn0000212	brm	92	52.510	ENSEBUG00000011442	-	82	58.327	Eptatretus_burgeri
FBgn0000212	brm	86	54.161	ENSELUG00000010318	smarca2	81	61.188	Esox_lucius
FBgn0000212	brm	86	56.126	ENSFCAG00000001568	SMARCA2	81	60.093	Felis_catus
FBgn0000212	brm	90	52.396	ENSFALG00000010416	SMARCA2	86	58.537	Ficedula_albicollis
FBgn0000212	brm	71	62.848	ENSFDAG00000010502	SMARCA2	78	60.395	Fukomys_damarensis
FBgn0000212	brm	93	53.026	ENSFHEG00000021250	SMARCA2	77	62.114	Fundulus_heteroclitus
FBgn0000212	brm	72	60.033	ENSGMOG00000014229	SMARCA2	79	60.746	Gadus_morhua
FBgn0000212	brm	85	55.112	ENSGALG00000010164	SMARCA2	80	60.962	Gallus_gallus
FBgn0000212	brm	73	59.950	ENSGAFG00000001164	SMARCA2	76	60.133	Gambusia_affinis
FBgn0000212	brm	83	55.884	ENSGACG00000014488	SMARCA2	78	60.714	Gasterosteus_aculeatus
FBgn0000212	brm	86	55.072	ENSGGOG00000000513	SMARCA2	84	59.859	Gorilla_gorilla
FBgn0000212	brm	83	56.770	ENSHBUG00000006691	SMARCA2	76	62.231	Haplochromis_burtoni
FBgn0000212	brm	72	61.576	ENSHGLG00000005215	SMARCA2	78	61.129	Heterocephalus_glaber_female
FBgn0000212	brm	81	57.876	ENSHGLG00100010496	SMARCA2	80	61.129	Heterocephalus_glaber_male
FBgn0000212	brm	60	63.591	ENSHCOG00000015348	-	74	62.316	Hippocampus_comes
FBgn0000212	brm	85	54.731	ENSIPUG00000011060	smarca2	79	61.218	Ictalurus_punctatus
FBgn0000212	brm	73	61.241	ENSSTOG00000006812	SMARCA2	81	60.247	Ictidomys_tridecemlineatus
FBgn0000212	brm	73	61.433	ENSJJAG00000010867	Smarca2	80	58.689	Jaculus_jaculus
FBgn0000212	brm	99	53.271	ENSKMAG00000015844	-	79	58.743	Kryptolebias_marmoratus
FBgn0000212	brm	85	53.691	ENSLOCG00000011499	smarca2	77	60.256	Lepisosteus_oculatus
FBgn0000212	brm	70	63.185	ENSLAFG00000014061	SMARCA2	80	60.247	Loxodonta_africana
FBgn0000212	brm	90	52.157	ENSMFAG00000003814	SMARCA2	81	59.433	Macaca_fascicularis
FBgn0000212	brm	90	51.161	ENSMMUG00000015279	SMARCA2	81	60.170	Macaca_mulatta
FBgn0000212	brm	90	53.050	ENSMNEG00000041069	SMARCA2	79	62.145	Macaca_nemestrina
FBgn0000212	brm	68	61.821	ENSMAMG00000003056	SMARCA2	80	62.719	Mastacembelus_armatus
FBgn0000212	brm	83	56.770	ENSMZEG00005020709	SMARCA2	76	62.231	Maylandia_zebra
FBgn0000212	brm	69	51.061	ENSMGAG00000005160	-	63	51.715	Meleagris_gallopavo
FBgn0000212	brm	90	51.849	ENSMICG00000005162	SMARCA2	81	60.170	Microcebus_murinus
FBgn0000212	brm	71	62.932	ENSMOCG00000001611	Smarca2	81	60.186	Microtus_ochrogaster
FBgn0000212	brm	71	61.636	ENSMMOG00000014196	SMARCA2	77	61.688	Mola_mola
FBgn0000212	brm	90	54.183	ENSMODG00000003578	SMARCA2	80	60.171	Monodelphis_domestica
FBgn0000212	brm	72	62.321	ENSMALG00000009611	SMARCA2	78	62.838	Monopterus_albus
FBgn0000212	brm	73	55.957	MGP_CAROLIEiJ_G0022841	Smarca2	78	53.236	Mus_caroli
FBgn0000212	brm	73	61.638	ENSMUSG00000024921	Smarca2	97	92.000	Mus_musculus
FBgn0000212	brm	71	63.131	MGP_PahariEiJ_G0014334	Smarca2	79	53.196	Mus_pahari
FBgn0000212	brm	63	80.556	MGP_SPRETEiJ_G0023759	Smarca2	91	81.818	Mus_spretus
FBgn0000212	brm	70	62.667	ENSMPUG00000005171	SMARCA2	91	59.062	Mustela_putorius_furo
FBgn0000212	brm	73	61.053	ENSNGAG00000000108	Smarca2	80	58.131	Nannospalax_galili
FBgn0000212	brm	79	51.753	ENSNBRG00000017998	SMARCA2	94	70.647	Neolamprologus_brichardi
FBgn0000212	brm	79	57.290	ENSNLEG00000008575	SMARCA2	80	60.870	Nomascus_leucogenys
FBgn0000212	brm	71	62.932	ENSODEG00000005452	SMARCA2	79	58.819	Octodon_degus
FBgn0000212	brm	70	62.975	ENSOCUG00000006320	SMARCA2	80	60.154	Oryctolagus_cuniculus
FBgn0000212	brm	76	59.657	ENSORLG00000020820	SMARCA2	75	63.585	Oryzias_latipes
FBgn0000212	brm	76	59.657	ENSORLG00015006289	SMARCA2	75	63.208	Oryzias_latipes_hsok
FBgn0000212	brm	93	52.441	ENSOMEG00000009736	-	80	61.398	Oryzias_melastigma
FBgn0000212	brm	71	62.710	ENSOARG00000013265	SMARCA2	81	60.154	Ovis_aries
FBgn0000212	brm	86	55.441	ENSPPAG00000038717	SMARCA2	84	60.202	Pan_paniscus
FBgn0000212	brm	86	56.194	ENSPPRG00000001879	SMARCA2	81	60.170	Panthera_pardus
FBgn0000212	brm	86	51.178	ENSPANG00000025121	SMARCA2	80	57.410	Papio_anubis
FBgn0000212	brm	93	54.509	ENSPKIG00000018469	-	77	61.457	Paramormyrops_kingsleyae
FBgn0000212	brm	90	53.831	ENSPSIG00000006284	SMARCA2	79	58.161	Pelodiscus_sinensis
FBgn0000212	brm	70	59.262	ENSPMGG00000013696	-	78	58.946	Periophthalmus_magnuspinnatus
FBgn0000212	brm	70	62.258	ENSPEMG00000019821	Smarca2	81	58.003	Peromyscus_maniculatus_bairdii
FBgn0000212	brm	88	51.761	ENSPMAG00000005337	-	80	58.846	Petromyzon_marinus
FBgn0000212	brm	90	54.970	ENSPCIG00000015658	SMARCA2	80	60.248	Phascolarctos_cinereus
FBgn0000212	brm	83	57.442	ENSPFOG00000001856	SMARCA2	76	62.264	Poecilia_formosa
FBgn0000212	brm	83	56.957	ENSPLAG00000017829	SMARCA2	76	61.070	Poecilia_latipinna
FBgn0000212	brm	83	57.442	ENSPMEG00000001815	-	77	60.974	Poecilia_mexicana
FBgn0000212	brm	83	56.597	ENSPREG00000013800	SMARCA2	76	60.770	Poecilia_reticulata
FBgn0000212	brm	90	50.414	ENSPCOG00000025709	SMARCA2	81	58.114	Propithecus_coquereli
FBgn0000212	brm	67	65.358	ENSPVAG00000000901	SMARCA2	80	64.179	Pteropus_vampyrus
FBgn0000212	brm	92	48.109	ENSPNYG00000004533	SMARCA2	76	59.471	Pundamilia_nyererei
FBgn0000212	brm	86	54.459	ENSPNAG00000014635	smarca2	77	61.935	Pygocentrus_nattereri
FBgn0000212	brm	71	61.678	ENSRNOG00000011931	Smarca2	79	58.289	Rattus_norvegicus
FBgn0000212	brm	71	63.224	ENSRBIG00000038618	SMARCA2	92	59.500	Rhinopithecus_bieti
FBgn0000212	brm	86	54.478	ENSRROG00000019271	SMARCA2	85	59.330	Rhinopithecus_roxellana
FBgn0000212	brm	90	53.151	ENSSBOG00000034827	SMARCA2	84	59.011	Saimiri_boliviensis_boliviensis
FBgn0000212	brm	90	54.756	ENSSHAG00000007884	SMARCA2	78	62.327	Sarcophilus_harrisii
FBgn0000212	brm	80	55.917	ENSSFOG00015014870	SMARCA2	78	61.812	Scleropages_formosus
FBgn0000212	brm	83	56.133	ENSSMAG00000013707	SMARCA2	77	62.052	Scophthalmus_maximus
FBgn0000212	brm	78	59.322	ENSSDUG00000008852	-	76	61.916	Seriola_dumerili
FBgn0000212	brm	74	61.330	ENSSLDG00000025449	SMARCA2	76	61.570	Seriola_lalandi_dorsalis
FBgn0000212	brm	62	67.110	ENSSARG00000007888	SMARCA2	78	57.581	Sorex_araneus
FBgn0000212	brm	81	55.794	ENSSPUG00000001629	SMARCA2	79	60.784	Sphenodon_punctatus
FBgn0000212	brm	93	53.733	ENSSPAG00000020091	-	79	62.386	Stegastes_partitus
FBgn0000212	brm	83	57.329	ENSTRUG00000015619	SMARCA2	76	62.914	Takifugu_rubripes
FBgn0000212	brm	85	53.841	ENSUAMG00000024701	SMARCA2	78	62.759	Ursus_americanus
FBgn0000212	brm	71	55.418	ENSVPAG00000001204	SMARCA2	83	55.868	Vicugna_pacos
FBgn0000212	brm	69	63.636	ENSVVUG00000004598	SMARCA2	96	61.702	Vulpes_vulpes
FBgn0000212	brm	92	52.769	ENSXETG00000015299	smarca2	76	60.870	Xenopus_tropicalis
FBgn0000212	brm	67	61.681	ENSXCOG00000011073	SMARCA2	79	61.901	Xiphophorus_couchianus
FBgn0000212	brm	99	53.898	ENSXMAG00000015611	SMARCA2	83	58.030	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001223	transcription coactivator binding	24137538.	IPI	Function
GO:0005515	protein binding	10809665.12093739.12381660.24618901.	IPI	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	12356740.15060132.	IDA	Component
GO:0006357	regulation of transcription by RNA polymerase II	25180232.	IMP	Process
GO:0007406	negative regulation of neuroblast proliferation	24550111.24618901.	IGI	Process
GO:0007406	negative regulation of neuroblast proliferation	24618901.	IMP	Process
GO:0007409	axonogenesis	17164414.	IMP	Process
GO:0007419	ventral cord development	26092715.	HMP	Process
GO:0007474	imaginal disc-derived wing vein specification	15013794.	IMP	Process
GO:0007480	imaginal disc-derived leg morphogenesis	18299390.	IGI	Process
GO:0008094	DNA-dependent ATPase activity	-	ISS	Function
GO:0008134	transcription factor binding	24137538.	IPI	Function
GO:0008586	imaginal disc-derived wing vein morphogenesis	19306864.	IMP	Process
GO:0008587	imaginal disc-derived wing margin morphogenesis	19306864.	IMP	Process
GO:0016514	SWI/SNF complex	-	IEA	Component
GO:0016586	RSC-type complex	18299390.	IDA	Component
GO:0016887	ATPase activity	7579694.	ISS	Function
GO:0035060	brahma complex	10809665.15060132.	IDA	Component
GO:0035172	hemocyte proliferation	14602069.	TAS	Process
GO:0036335	intestinal stem cell homeostasis	24137538.	IMP	Process
GO:0042393	histone binding	-	IEA	Function
GO:0043044	ATP-dependent chromatin remodeling	12356740.	IDA	Process
GO:0043044	ATP-dependent chromatin remodeling	7579694.	ISS	Process
GO:0043697	cell dedifferentiation	24618901.	IGI	Process
GO:0043974	histone H3-K27 acetylation	22493065.	IMP	Process
GO:0045088	regulation of innate immune response	25180232.	IGI	Process
GO:0045088	regulation of innate immune response	25180232.	IMP	Process
GO:0045893	positive regulation of transcription, DNA-templated	12356740.	IDA	Process
GO:0045893	positive regulation of transcription, DNA-templated	7579694.	ISS	Process
GO:0048477	oogenesis	11267889.	TAS	Process
GO:0048813	dendrite morphogenesis	17164414.	IMP	Process
GO:0070983	dendrite guidance	21284845.	IMP	Process
GO:1902692	regulation of neuroblast proliferation	24550111.	IGI	Process
GO:2000134	negative regulation of G1/S transition of mitotic cell cycle	12093739.	IGI	Process
GO:2000648	positive regulation of stem cell proliferation	24137538.	IMP	Process