EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0000426 (Gene tree)
Gene ID: 36314
Gene Symbol: SmF
Alias: -
Full Name: Small ribonucleoprotein particle protein SmF
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Minus strand
Length: 467 bases
Position: chr2R:12183844-12184310
Accession: FBgn0000426
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0087118	LSM	PF01423.22	2.9e-21	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0088010	-	467	-	FBpp0087118	88 (aa)	-	Q24297

Gene Model

Click here to download FBgn0000426's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0000426's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0000426	SmF	72	49.206	FBgn0034564	CG9344	80	49.206

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0000426	SmF	83	82.192	ENSG00000139343	SNRPF	98	78.571	Homo_sapiens
FBgn0000426	SmF	84	79.730	ENSAPOG00000003377	snrpf	66	76.471	Acanthochromis_polyacanthus
FBgn0000426	SmF	83	82.192	ENSAMEG00000002166	-	99	78.571	Ailuropoda_melanoleuca
FBgn0000426	SmF	82	72.222	ENSAMEG00000018718	-	95	69.512	Ailuropoda_melanoleuca
FBgn0000426	SmF	83	80.822	ENSACIG00000013216	snrpf	99	77.381	Amphilophus_citrinellus
FBgn0000426	SmF	83	80.822	ENSAOCG00000015108	snrpf	99	77.381	Amphiprion_ocellaris
FBgn0000426	SmF	83	80.822	ENSAPEG00000022022	snrpf	99	77.381	Amphiprion_percula
FBgn0000426	SmF	83	80.822	ENSATEG00000022625	snrpf	90	77.381	Anabas_testudineus
FBgn0000426	SmF	83	82.192	ENSACAG00000014073	SNRPF	97	78.571	Anolis_carolinensis
FBgn0000426	SmF	81	76.056	ENSANAG00000020297	-	75	73.171	Aotus_nancymaae
FBgn0000426	SmF	84	56.757	ENSANAG00000025860	-	99	55.294	Aotus_nancymaae
FBgn0000426	SmF	83	82.192	ENSANAG00000032845	SNRPF	98	78.571	Aotus_nancymaae
FBgn0000426	SmF	83	80.822	ENSACLG00000016066	snrpf	99	77.381	Astatotilapia_calliptera
FBgn0000426	SmF	83	78.082	ENSAMXG00000007421	snrpf	98	75.000	Astyanax_mexicanus
FBgn0000426	SmF	86	73.684	ENSBTAG00000050012	-	94	73.684	Bos_taurus
FBgn0000426	SmF	83	82.192	ENSBTAG00000016271	SNRPF	98	78.571	Bos_taurus
FBgn0000426	SmF	93	67.073	WBGene00004918	snr-5	96	67.073	Caenorhabditis_elegans
FBgn0000426	SmF	83	82.192	ENSCJAG00000002705	-	98	78.571	Callithrix_jacchus
FBgn0000426	SmF	81	78.873	ENSCAFG00000031151	-	95	75.610	Canis_familiaris
FBgn0000426	SmF	88	77.922	ENSCAFG00000006395	-	79	75.000	Canis_familiaris
FBgn0000426	SmF	81	78.873	ENSCAFG00020010823	-	95	75.610	Canis_lupus_dingo
FBgn0000426	SmF	97	70.588	ENSCAFG00020013161	-	90	70.588	Canis_lupus_dingo
FBgn0000426	SmF	95	71.429	ENSTSYG00000031636	-	71	71.429	Carlito_syrichta
FBgn0000426	SmF	84	71.622	ENSTSYG00000030635	-	99	69.412	Carlito_syrichta
FBgn0000426	SmF	83	78.378	ENSTSYG00000036502	-	98	75.294	Carlito_syrichta
FBgn0000426	SmF	83	82.192	ENSCAPG00000007242	SNRPF	99	78.571	Cavia_aperea
FBgn0000426	SmF	83	82.192	ENSCPOG00000013898	SNRPF	98	78.571	Cavia_porcellus
FBgn0000426	SmF	83	82.192	ENSCCAG00000037378	-	98	78.571	Cebus_capucinus
FBgn0000426	SmF	99	68.966	ENSCCAG00000033627	-	69	68.966	Cebus_capucinus
FBgn0000426	SmF	95	78.571	ENSCCAG00000017356	-	98	78.571	Cebus_capucinus
FBgn0000426	SmF	83	82.192	ENSCLAG00000007200	SNRPF	98	78.571	Chinchilla_lanigera
FBgn0000426	SmF	88	77.922	ENSCSAG00000003602	-	72	75.000	Chlorocebus_sabaeus
FBgn0000426	SmF	70	82.258	ENSCHOG00000009392	SNRPF	97	82.258	Choloepus_hoffmanni
FBgn0000426	SmF	95	70.238	ENSCPBG00000001985	-	98	70.238	Chrysemys_picta_bellii
FBgn0000426	SmF	95	75.000	ENSCPBG00000024287	-	66	75.000	Chrysemys_picta_bellii
FBgn0000426	SmF	84	74.324	ENSCPBG00000006227	-	99	72.941	Chrysemys_picta_bellii
FBgn0000426	SmF	95	70.238	ENSCPBG00000026463	-	98	70.238	Chrysemys_picta_bellii
FBgn0000426	SmF	98	77.907	ENSCSAVG00000007498	-	98	77.907	Ciona_savignyi
FBgn0000426	SmF	83	82.192	ENSCGRG00001017100	-	98	78.571	Cricetulus_griseus_chok1gshd
FBgn0000426	SmF	83	76.712	ENSCGRG00001008965	-	65	73.810	Cricetulus_griseus_chok1gshd
FBgn0000426	SmF	83	82.192	ENSCGRG00000000336	-	98	78.571	Cricetulus_griseus_crigri
FBgn0000426	SmF	89	74.359	ENSCGRG00000018878	-	97	74.359	Cricetulus_griseus_crigri
FBgn0000426	SmF	83	82.192	ENSCSEG00000004748	snrpf	98	78.571	Cynoglossus_semilaevis
FBgn0000426	SmF	84	79.730	ENSCVAG00000000397	snrpf	67	76.471	Cyprinodon_variegatus
FBgn0000426	SmF	83	78.667	ENSDARG00000105037	snrpf	98	75.581	Danio_rerio
FBgn0000426	SmF	83	82.192	ENSDNOG00000048989	-	75	78.571	Dasypus_novemcinctus
FBgn0000426	SmF	83	82.192	ENSDNOG00000043775	-	54	78.571	Dasypus_novemcinctus
FBgn0000426	SmF	80	71.429	ENSDNOG00000049373	-	72	65.060	Dasypus_novemcinctus
FBgn0000426	SmF	80	72.857	ENSDORG00000025351	-	97	72.857	Dipodomys_ordii
FBgn0000426	SmF	67	79.661	ENSDORG00000029740	-	85	75.714	Dipodomys_ordii
FBgn0000426	SmF	83	82.192	ENSETEG00000001558	-	98	78.571	Echinops_telfairi
FBgn0000426	SmF	93	65.854	ENSEBUG00000001793	-	86	65.854	Eptatretus_burgeri
FBgn0000426	SmF	83	82.192	ENSECAG00000019817	SNRPF	68	78.571	Equus_caballus
FBgn0000426	SmF	83	82.192	ENSEEUG00000013509	SNRPF	99	78.571	Erinaceus_europaeus
FBgn0000426	SmF	83	78.082	ENSELUG00000003121	RUXF	98	75.000	Esox_lucius
FBgn0000426	SmF	97	72.941	ENSELUG00000007737	RUXF	97	73.810	Esox_lucius
FBgn0000426	SmF	83	82.192	ENSFCAG00000029966	-	98	78.571	Felis_catus
FBgn0000426	SmF	83	63.014	ENSFCAG00000021942	-	98	61.905	Felis_catus
FBgn0000426	SmF	98	56.977	ENSFCAG00000031148	-	79	56.977	Felis_catus
FBgn0000426	SmF	83	82.192	ENSFALG00000010799	SNRPF	98	78.571	Ficedula_albicollis
FBgn0000426	SmF	83	82.192	ENSFDAG00000002831	-	98	78.571	Fukomys_damarensis
FBgn0000426	SmF	83	80.822	ENSFHEG00000003240	snrpf	74	77.381	Fundulus_heteroclitus
FBgn0000426	SmF	83	80.822	ENSGMOG00000007741	snrpf	99	77.381	Gadus_morhua
FBgn0000426	SmF	83	82.192	ENSGALG00000011409	SNRPF	98	78.571	Gallus_gallus
FBgn0000426	SmF	83	80.822	ENSGAFG00000016187	snrpf	97	77.381	Gambusia_affinis
FBgn0000426	SmF	83	79.452	ENSGACG00000020055	snrpf	99	76.190	Gasterosteus_aculeatus
FBgn0000426	SmF	76	70.149	ENSGAGG00000014132	-	82	69.118	Gopherus_agassizii
FBgn0000426	SmF	84	74.324	ENSGAGG00000012945	-	73	74.390	Gopherus_agassizii
FBgn0000426	SmF	73	73.438	ENSGAGG00000020974	-	54	73.438	Gopherus_agassizii
FBgn0000426	SmF	67	72.881	ENSGAGG00000011163	-	98	72.881	Gopherus_agassizii
FBgn0000426	SmF	90	74.684	ENSGAGG00000022991	-	89	74.684	Gopherus_agassizii
FBgn0000426	SmF	93	62.195	ENSGGOG00000039936	-	92	62.195	Gorilla_gorilla
FBgn0000426	SmF	88	59.740	ENSGGOG00000039564	-	93	59.740	Gorilla_gorilla
FBgn0000426	SmF	83	82.192	ENSGGOG00000001127	-	99	78.571	Gorilla_gorilla
FBgn0000426	SmF	83	80.822	ENSHGLG00000021172	-	98	77.381	Heterocephalus_glaber_female
FBgn0000426	SmF	83	82.192	ENSHGLG00000009108	SNRPF	98	78.571	Heterocephalus_glaber_female
FBgn0000426	SmF	83	82.192	ENSHGLG00100008103	-	99	78.571	Heterocephalus_glaber_male
FBgn0000426	SmF	83	80.822	ENSHGLG00100019596	-	98	77.381	Heterocephalus_glaber_male
FBgn0000426	SmF	72	71.429	ENSHCOG00000018663	snrpf	55	71.429	Hippocampus_comes
FBgn0000426	SmF	83	80.822	ENSIPUG00000018994	snrpf	99	77.381	Ictalurus_punctatus
FBgn0000426	SmF	83	82.192	ENSSTOG00000010434	-	98	78.571	Ictidomys_tridecemlineatus
FBgn0000426	SmF	95	70.238	ENSJJAG00000010502	-	98	70.238	Jaculus_jaculus
FBgn0000426	SmF	76	74.627	ENSJJAG00000004828	-	100	74.627	Jaculus_jaculus
FBgn0000426	SmF	97	62.353	ENSJJAG00000004558	-	99	62.353	Jaculus_jaculus
FBgn0000426	SmF	83	82.192	ENSJJAG00000011272	-	98	78.571	Jaculus_jaculus
FBgn0000426	SmF	83	80.822	ENSKMAG00000013566	snrpf	98	77.381	Kryptolebias_marmoratus
FBgn0000426	SmF	83	80.822	ENSLBEG00000008800	snrpf	98	77.381	Labrus_bergylta
FBgn0000426	SmF	83	82.192	ENSLACG00000002456	-	72	78.571	Latimeria_chalumnae
FBgn0000426	SmF	83	78.082	ENSLOCG00000015744	snrpf	98	75.000	Lepisosteus_oculatus
FBgn0000426	SmF	83	82.192	ENSLAFG00000017426	SNRPF	98	78.571	Loxodonta_africana
FBgn0000426	SmF	83	80.822	ENSMAMG00000016593	snrpf	99	77.381	Mastacembelus_armatus
FBgn0000426	SmF	83	80.822	ENSMZEG00005014701	snrpf	99	77.381	Maylandia_zebra
FBgn0000426	SmF	84	82.432	ENSMGAG00000011453	-	77	78.824	Meleagris_gallopavo
FBgn0000426	SmF	69	73.770	ENSMAUG00000010289	-	76	73.770	Mesocricetus_auratus
FBgn0000426	SmF	72	82.540	ENSMAUG00000016909	-	100	78.378	Mesocricetus_auratus
FBgn0000426	SmF	83	76.712	ENSMAUG00000008799	-	98	73.810	Mesocricetus_auratus
FBgn0000426	SmF	72	82.540	ENSMAUG00000019737	-	100	78.378	Mesocricetus_auratus
FBgn0000426	SmF	83	82.192	ENSMICG00000012153	-	98	78.571	Microcebus_murinus
FBgn0000426	SmF	88	71.429	ENSMICG00000030494	-	70	69.318	Microcebus_murinus
FBgn0000426	SmF	77	70.588	ENSMOCG00000020220	-	100	68.354	Microtus_ochrogaster
FBgn0000426	SmF	83	71.233	ENSMOCG00000022166	-	88	69.136	Microtus_ochrogaster
FBgn0000426	SmF	83	82.192	ENSMOCG00000020437	Snrpf	98	78.571	Microtus_ochrogaster
FBgn0000426	SmF	83	79.452	ENSMMOG00000007127	snrpf	99	76.190	Mola_mola
FBgn0000426	SmF	83	82.192	ENSMODG00000008091	SNRPF	74	78.571	Monodelphis_domestica
FBgn0000426	SmF	83	80.822	ENSMALG00000012328	snrpf	99	77.381	Monopterus_albus
FBgn0000426	SmF	83	82.192	MGP_CAROLIEiJ_G0015735	-	98	78.571	Mus_caroli
FBgn0000426	SmF	83	82.192	ENSMUSG00000020018	Snrpf	98	78.571	Mus_musculus
FBgn0000426	SmF	83	82.192	MGP_PahariEiJ_G0031350	Snrpf	98	78.571	Mus_pahari
FBgn0000426	SmF	83	82.192	MGP_SPRETEiJ_G0016553	Snrpf	98	78.571	Mus_spretus
FBgn0000426	SmF	83	82.192	ENSMPUG00000007176	-	75	78.571	Mustela_putorius_furo
FBgn0000426	SmF	98	63.953	ENSMLUG00000026269	-	81	63.953	Myotis_lucifugus
FBgn0000426	SmF	88	77.922	ENSMLUG00000026149	-	83	75.000	Myotis_lucifugus
FBgn0000426	SmF	83	82.192	ENSMLUG00000013577	-	99	78.571	Myotis_lucifugus
FBgn0000426	SmF	83	82.192	ENSMLUG00000027932	-	79	78.571	Myotis_lucifugus
FBgn0000426	SmF	88	77.922	ENSMLUG00000029201	-	83	75.000	Myotis_lucifugus
FBgn0000426	SmF	77	69.118	ENSNGAG00000005851	-	80	69.118	Nannospalax_galili
FBgn0000426	SmF	83	82.192	ENSNGAG00000024292	-	98	78.571	Nannospalax_galili
FBgn0000426	SmF	83	80.822	ENSNBRG00000011682	snrpf	86	77.381	Neolamprologus_brichardi
FBgn0000426	SmF	83	60.274	ENSMEUG00000000671	SNRPF	99	59.524	Notamacropus_eugenii
FBgn0000426	SmF	83	82.192	ENSODEG00000010328	-	99	78.571	Octodon_degus
FBgn0000426	SmF	83	82.192	ENSOCUG00000010925	SNRPF	74	78.571	Oryctolagus_cuniculus
FBgn0000426	SmF	83	78.082	ENSORLG00020008216	snrpf	99	75.000	Oryzias_latipes_hni
FBgn0000426	SmF	83	78.082	ENSORLG00015007418	snrpf	99	75.000	Oryzias_latipes_hsok
FBgn0000426	SmF	83	79.452	ENSOMEG00000003018	snrpf	99	76.190	Oryzias_melastigma
FBgn0000426	SmF	83	80.822	ENSOGAG00000030323	-	98	76.190	Otolemur_garnettii
FBgn0000426	SmF	88	77.922	ENSOARG00000011853	-	77	75.000	Ovis_aries
FBgn0000426	SmF	89	58.974	ENSPPAG00000037479	-	95	58.974	Pan_paniscus
FBgn0000426	SmF	93	60.976	ENSPPAG00000037544	-	92	60.976	Pan_paniscus
FBgn0000426	SmF	83	82.192	ENSPPRG00000005875	-	98	78.571	Panthera_pardus
FBgn0000426	SmF	93	58.537	ENSPPRG00000007449	-	84	58.537	Panthera_pardus
FBgn0000426	SmF	93	60.976	ENSPTIG00000005117	-	98	60.976	Panthera_tigris_altaica
FBgn0000426	SmF	83	82.192	ENSPTIG00000007520	SNRPF	98	78.571	Panthera_tigris_altaica
FBgn0000426	SmF	93	60.976	ENSPTRG00000043814	-	92	60.976	Pan_troglodytes
FBgn0000426	SmF	89	58.974	ENSPTRG00000047717	-	95	58.974	Pan_troglodytes
FBgn0000426	SmF	83	80.822	ENSPKIG00000014784	snrpf	92	77.381	Paramormyrops_kingsleyae
FBgn0000426	SmF	83	82.192	ENSPSIG00000016462	SNRPF	98	78.571	Pelodiscus_sinensis
FBgn0000426	SmF	83	79.452	ENSPMGG00000023548	snrpf	99	76.190	Periophthalmus_magnuspinnatus
FBgn0000426	SmF	83	82.192	ENSPEMG00000023326	Snrpf	98	78.571	Peromyscus_maniculatus_bairdii
FBgn0000426	SmF	83	80.822	ENSPLAG00000023932	snrpf	99	77.381	Poecilia_latipinna
FBgn0000426	SmF	83	80.822	ENSPMEG00000003377	snrpf	99	77.381	Poecilia_mexicana
FBgn0000426	SmF	83	80.822	ENSPREG00000022635	snrpf	97	77.381	Poecilia_reticulata
FBgn0000426	SmF	83	82.192	ENSPPYG00000004847	-	98	78.571	Pongo_abelii
FBgn0000426	SmF	83	82.192	ENSPCOG00000023833	-	98	78.571	Propithecus_coquereli
FBgn0000426	SmF	83	82.192	ENSPVAG00000009036	SNRPF	98	78.571	Pteropus_vampyrus
FBgn0000426	SmF	83	80.822	ENSPNYG00000021712	snrpf	99	77.381	Pundamilia_nyererei
FBgn0000426	SmF	83	79.452	ENSPNAG00000019117	snrpf	99	76.190	Pygocentrus_nattereri
FBgn0000426	SmF	83	82.192	ENSRNOG00000005556	Snrpf	98	78.571	Rattus_norvegicus
FBgn0000426	SmF	83	79.452	ENSRBIG00000030414	-	98	75.000	Rhinopithecus_bieti
FBgn0000426	SmF	83	79.452	ENSRROG00000021975	-	98	75.000	Rhinopithecus_roxellana
FBgn0000426	SmF	90	53.750	YPR182W	SMX3	93	53.750	Saccharomyces_cerevisiae
FBgn0000426	SmF	84	68.000	ENSSBOG00000027638	-	99	66.279	Saimiri_boliviensis_boliviensis
FBgn0000426	SmF	83	67.123	ENSSBOG00000032297	-	97	66.667	Saimiri_boliviensis_boliviensis
FBgn0000426	SmF	83	82.192	ENSSBOG00000012868	-	98	79.762	Saimiri_boliviensis_boliviensis
FBgn0000426	SmF	83	82.192	ENSSBOG00000036179	-	98	78.571	Saimiri_boliviensis_boliviensis
FBgn0000426	SmF	88	77.922	ENSSHAG00000012294	SNRPF	79	75.000	Sarcophilus_harrisii
FBgn0000426	SmF	76	77.612	ENSSFOG00015021523	snrpf	100	77.612	Scleropages_formosus
FBgn0000426	SmF	83	79.452	ENSSMAG00000005533	snrpf	97	76.190	Scophthalmus_maximus
FBgn0000426	SmF	72	80.952	ENSSDUG00000016283	snrpf	75	80.952	Seriola_dumerili
FBgn0000426	SmF	92	67.901	ENSSLDG00000003885	-	99	67.901	Seriola_lalandi_dorsalis
FBgn0000426	SmF	83	80.822	ENSSLDG00000005119	snrpf	98	77.381	Seriola_lalandi_dorsalis
FBgn0000426	SmF	83	82.192	ENSSPUG00000014590	-	99	78.571	Sphenodon_punctatus
FBgn0000426	SmF	88	77.922	ENSSPAG00000003283	snrpf	100	75.000	Stegastes_partitus
FBgn0000426	SmF	83	82.192	ENSSSCG00000000895	SNRPF	98	78.571	Sus_scrofa
FBgn0000426	SmF	66	79.310	ENSTRUG00000014956	snrpf	100	75.362	Takifugu_rubripes
FBgn0000426	SmF	83	80.822	ENSTNIG00000012672	snrpf	98	77.381	Tetraodon_nigroviridis
FBgn0000426	SmF	83	60.274	ENSTTRG00000006070	SNRPF	98	59.524	Tursiops_truncatus
FBgn0000426	SmF	83	82.192	ENSUAMG00000008176	-	98	78.571	Ursus_americanus
FBgn0000426	SmF	92	72.840	ENSUAMG00000001101	-	94	72.840	Ursus_americanus
FBgn0000426	SmF	81	74.648	ENSUMAG00000006177	-	94	71.605	Ursus_maritimus
FBgn0000426	SmF	83	82.192	ENSUMAG00000003528	-	98	78.571	Ursus_maritimus
FBgn0000426	SmF	83	82.192	ENSVPAG00000008712	-	98	78.571	Vicugna_pacos
FBgn0000426	SmF	86	75.000	ENSVVUG00000023821	-	97	75.000	Vulpes_vulpes
FBgn0000426	SmF	84	60.526	ENSXETG00000021630	snrpf	100	59.770	Xenopus_tropicalis
FBgn0000426	SmF	83	80.822	ENSXCOG00000013860	snrpf	97	77.381	Xiphophorus_couchianus
FBgn0000426	SmF	83	80.822	ENSXMAG00000015448	snrpf	99	77.381	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000387	spliceosomal snRNP assembly	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	18981222.	IC	Process
GO:0000398	mRNA splicing, via spliceosome	10908584.	ISS	Process
GO:0000398	mRNA splicing, via spliceosome	1694092.	NAS	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISS	Function
GO:0005681	spliceosomal complex	10908584.	ISS	Component
GO:0005685	U1 snRNP	21873635.	IBA	Component
GO:0005732	small nucleolar ribonucleoprotein complex	-	IEA	Component
GO:0030532	small nuclear ribonucleoprotein complex	10908584.	ISS	Component
GO:0030532	small nuclear ribonucleoprotein complex	1694092.	NAS	Component
GO:0071011	precatalytic spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	18981222.	HDA	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component