EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0001087 (Gene tree)
Gene ID: 44819
Gene Symbol: g
Alias: -
Full Name: garnet
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 9075
Position: chrX: 13727204-13736278
Accession: FBgn0001087
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0331710	-	3993	-	FBpp0304099	967 (aa)	-	M9PJM7
FBtr0073842	-	3853	-	FBpp0073673	1034 (aa)	-	P54362
FBtr0331709	-	4147	-	FBpp0304098	1033 (aa)	-	D3DMP9

Gene Model

Click here to download FBgn0001087's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0001087's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0001087	g	81	61.222	ENSG00000065000	AP3D1	100	80.093	Homo_sapiens
FBgn0001087	g	68	32.297	YPL195W	APL5	69	33.333	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005770	late endosome	21490149.	IDA	Component
GO:0005783	endoplasmic reticulum	11514618.	IDA	Component
GO:0005795	Golgi stack	11514618.	IDA	Component
GO:0005798	Golgi-associated vesicle	10659786.	NAS	Component
GO:0006623	protein targeting to vacuole	21873635.	IBA	Process
GO:0006726	eye pigment biosynthetic process	1909678.	IDA	Process
GO:0006726	eye pigment biosynthetic process	10659786.	IEP	Process
GO:0006726	eye pigment biosynthetic process	9303295.	IMP	Process
GO:0006727	ommochrome biosynthetic process	1909678.	IMP	Process
GO:0006886	intracellular protein transport	21873635.	IBA	Process
GO:0006887	exocytosis	21149569.	IMP	Process
GO:0006895	Golgi to endosome transport	10659786.	NAS	Process
GO:0006896	Golgi to vacuole transport	21873635.	IBA	Process
GO:0006897	endocytosis	19000840.	IMP	Process
GO:0007040	lysosome organization	11268039.	ISS	Process
GO:0007041	lysosomal transport	10751143.	TAS	Process
GO:0007220	Notch receptor processing	19000840.	IMP	Process
GO:0008055	ocellus pigment biosynthetic process	1909678.	IDA	Process
GO:0008057	eye pigment granule organization	9303295.	IMP	Process
GO:0008340	determination of adult lifespan	17435236.	IMP	Process
GO:0008565	protein transporter activity	-	ISS	Function
GO:0010008	endosome membrane	21873635.	IBA	Component
GO:0016182	synaptic vesicle budding from endosome	21873635.	IBA	Process
GO:0030123	AP-3 adaptor complex	21873635.	IBA	Component
GO:0030123	AP-3 adaptor complex	9303295.	NAS	Component
GO:0043195	terminal bouton	21873635.	IBA	Component
GO:0046907	intracellular transport	11697879.	TAS	Process
GO:0048072	compound eye pigmentation	17156100.	IGI	Process
GO:0048490	anterograde synaptic vesicle transport	21873635.	IBA	Process
GO:0048499	synaptic vesicle membrane organization	21873635.	IBA	Process
GO:0060967	negative regulation of gene silencing by RNA	21746852.	IMP	Process
GO:0098830	presynaptic endosome	21873635.	IBA	Component
GO:0098943	neurotransmitter receptor transport, postsynaptic endosome to lysosome	21873635.	IBA	Process