EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0001215 (Gene tree)
Gene ID: 43385
Gene Symbol: Hrb98DE
Alias: -
Full Name: Heterogeneous nuclear ribonucleoprotein at 98DE
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 5944 bases
Position: chr3R:28599834-28605777
Accession: FBgn0001215
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0084671	RRM_1	PF00076.22	7.3e-34	1	2
FBpp0084671	RRM_1	PF00076.22	7.3e-34	2	2
FBpp0084672	RRM_1	PF00076.22	7.3e-34	1	2
FBpp0084672	RRM_1	PF00076.22	7.3e-34	2	2
FBpp0084668	RRM_1	PF00076.22	7.4e-34	1	2
FBpp0084668	RRM_1	PF00076.22	7.4e-34	2	2
FBpp0084669	RRM_1	PF00076.22	7.5e-34	1	2
FBpp0084669	RRM_1	PF00076.22	7.5e-34	2	2
FBpp0084670	RRM_1	PF00076.22	7.5e-34	1	2
FBpp0084670	RRM_1	PF00076.22	7.5e-34	2	2
FBpp0084667	RRM_1	PF00076.22	7.7e-34	1	2
FBpp0084667	RRM_1	PF00076.22	7.7e-34	2	2

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0085301	-	2261	-	FBpp0084670	365 (aa)	-	P07909
FBtr0085300	-	1542	-	FBpp0084669	365 (aa)	-	P07909
FBtr0085303	-	1530	-	FBpp0084672	361 (aa)	-	A4V3J6
FBtr0085302	-	1913	-	FBpp0084671	361 (aa)	-	A4V3J6
FBtr0085299	-	2253	-	FBpp0084668	360 (aa)	-	C8VV67
FBtr0085298	-	2265	-	FBpp0084667	364 (aa)	-	E8NH29

Gene Model

Click here to download FBgn0001215's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0001215's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
FBgn0001215	Hrb98DE	79	32.404	FBgn0263396	sqd	60	35.533
FBgn0001215	Hrb98DE	53	32.828	FBgn0036496	CG7804	50	34.302

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0001215	Hrb98DE	52	40.994	ENSEBUG00000010003	-	81	40.994	Eptatretus_burgeri
FBgn0001215	Hrb98DE	56	48.750	ENSMMOG00000004242	-	97	48.447	Mola_mola
FBgn0001215	Hrb98DE	73	37.302	ENSORLG00000023542	-	60	44.767	Oryzias_latipes
FBgn0001215	Hrb98DE	52	45.665	ENSORLG00000023176	-	58	45.665	Oryzias_latipes
FBgn0001215	Hrb98DE	58	39.423	ENSORLG00000030284	-	64	39.695	Oryzias_latipes
FBgn0001215	Hrb98DE	55	43.195	ENSORLG00020006029	-	60	43.195	Oryzias_latipes_hni
FBgn0001215	Hrb98DE	50	44.295	ENSORLG00020007084	-	75	44.295	Oryzias_latipes_hni
FBgn0001215	Hrb98DE	81	32.770	ENSOMEG00000006327	-	67	35.789	Oryzias_melastigma
FBgn0001215	Hrb98DE	92	40.756	ENSOMEG00000012368	-	69	44.571	Oryzias_melastigma
FBgn0001215	Hrb98DE	85	38.007	ENSOMEG00000006903	-	57	43.605	Oryzias_melastigma
FBgn0001215	Hrb98DE	89	38.095	ENSOMEG00000021030	-	62	43.860	Oryzias_melastigma
FBgn0001215	Hrb98DE	92	41.589	ENSOMEG00000023475	-	73	44.571	Oryzias_melastigma
FBgn0001215	Hrb98DE	85	37.500	ENSOMEG00000002509	-	78	44.000	Oryzias_melastigma
FBgn0001215	Hrb98DE	79	34.831	ENSOMEG00000002084	-	70	49.398	Oryzias_melastigma
FBgn0001215	Hrb98DE	51	42.581	ENSOMEG00000009566	-	90	40.237	Oryzias_melastigma
FBgn0001215	Hrb98DE	75	39.394	ENSOMEG00000002000	-	59	46.512	Oryzias_melastigma
FBgn0001215	Hrb98DE	51	46.821	ENSSHAG00000015609	-	81	46.821	Sarcophilus_harrisii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000381	regulation of alternative mRNA splicing, via spliceosome	19196985.	IMP	Process
GO:0001745	compound eye morphogenesis	17698010.	IGI	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	10908586.	ISS	Function
GO:0005634	nucleus	25294944.	HDA	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	22453833.	IDA	Component
GO:0005703	polytene chromosome puff	19346337.	IDA	Component
GO:0033119	negative regulation of RNA splicing	19346337.	IMP	Process
GO:0036099	female germ-line stem cell population maintenance	22453833.	IMP	Process
GO:0043565	sequence-specific DNA binding	19196985.	IDA	Function
GO:0045727	positive regulation of translation	22453833.	IMP	Process
GO:0048027	mRNA 5'-UTR binding	22453833.	IDA	Function
GO:0048477	oogenesis	22453833.	IMP	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	1730753.	IDA	Component
GO:1990904	ribonucleoprotein complex	1730753.	IPI	Component
GO:1990904	ribonucleoprotein complex	1730753.	ISS	Component