EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0001978 (Gene tree)
Gene ID: 34888
Gene Symbol: stc
Alias: -
Full Name: shuttle craft
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4590 bases
Position: chr2L:15113480-15118069
Accession: FBgn0001978
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0080266	R3H	PF01424.22	1.8e-16	1	1
FBpp0304750	R3H	PF01424.22	1.8e-16	1	1
FBpp0304749	R3H	PF01424.22	1.8e-16	1	1
FBpp0080265	R3H	PF01424.22	1.8e-16	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0332474	-	4133	-	FBpp0304750	1102 (aa)	-	M9PD57
FBtr0080706	-	4124	-	FBpp0080266	1099 (aa)	-	P40798-2
FBtr0080705	-	4145	-	FBpp0080265	1106 (aa)	-	P40798
FBtr0332473	-	4112	-	FBpp0304749	1095 (aa)	-	M9PDG3

Gene Model

Click here to download FBgn0001978's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0001978's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0001978	stc	72	41.363	ENSG00000086102	NFX1	74	41.396	Homo_sapiens
FBgn0001978	stc	66	43.733	ENSAPOG00000016671	si:dkey-10f23.2	69	43.733	Acanthochromis_polyacanthus
FBgn0001978	stc	65	44.082	ENSAMEG00000007472	NFX1	66	44.086	Ailuropoda_melanoleuca
FBgn0001978	stc	66	43.925	ENSACIG00000021055	si:dkey-10f23.2	70	43.925	Amphilophus_citrinellus
FBgn0001978	stc	78	39.306	ENSAOCG00000017316	si:dkey-10f23.2	85	40.512	Amphiprion_ocellaris
FBgn0001978	stc	78	39.194	ENSAPEG00000012401	si:dkey-10f23.2	83	40.396	Amphiprion_percula
FBgn0001978	stc	89	36.769	ENSATEG00000002080	si:dkey-10f23.2	69	43.258	Anabas_testudineus
FBgn0001978	stc	66	43.373	ENSAPLG00000005524	NFX1	65	43.373	Anas_platyrhynchos
FBgn0001978	stc	67	43.316	ENSACAG00000002412	NFX1	67	43.426	Anolis_carolinensis
FBgn0001978	stc	72	41.484	ENSANAG00000001809	NFX1	74	41.516	Aotus_nancymaae
FBgn0001978	stc	66	44.192	ENSACLG00000003795	si:dkey-10f23.2	70	44.192	Astatotilapia_calliptera
FBgn0001978	stc	69	43.887	ENSAMXG00000006963	si:dkey-10f23.2	69	43.887	Astyanax_mexicanus
FBgn0001978	stc	73	41.516	ENSBTAG00000012385	NFX1	74	41.516	Bos_taurus
FBgn0001978	stc	75	37.028	WBGene00007048	nfx-1	75	37.412	Caenorhabditis_elegans
FBgn0001978	stc	72	41.727	ENSCJAG00000008142	NFX1	74	41.757	Callithrix_jacchus
FBgn0001978	stc	65	44.038	ENSCAFG00000001848	NFX1	66	44.043	Canis_familiaris
FBgn0001978	stc	65	44.005	ENSCAFG00020015630	NFX1	66	44.011	Canis_lupus_dingo
FBgn0001978	stc	73	41.396	ENSCHIG00000020037	NFX1	74	41.396	Capra_hircus
FBgn0001978	stc	69	42.239	ENSTSYG00000004125	NFX1	70	42.351	Carlito_syrichta
FBgn0001978	stc	72	37.985	ENSCAPG00000005611	NFX1	85	38.055	Cavia_aperea
FBgn0001978	stc	72	41.484	ENSCPOG00000003470	NFX1	74	41.516	Cavia_porcellus
FBgn0001978	stc	69	42.656	ENSCCAG00000025001	NFX1	74	41.516	Cebus_capucinus
FBgn0001978	stc	72	40.389	ENSCLAG00000002893	NFX1	73	40.433	Chinchilla_lanigera
FBgn0001978	stc	72	41.727	ENSCSAG00000009971	NFX1	74	41.757	Chlorocebus_sabaeus
FBgn0001978	stc	65	41.826	ENSCHOG00000009225	NFX1	68	41.700	Choloepus_hoffmanni
FBgn0001978	stc	66	43.432	ENSCPBG00000017928	NFX1	84	43.261	Chrysemys_picta_bellii
FBgn0001978	stc	76	37.166	ENSCING00000004746	nf-x-like	71	38.253	Ciona_intestinalis
FBgn0001978	stc	78	36.633	ENSCSAVG00000005762	-	74	37.648	Ciona_savignyi
FBgn0001978	stc	72	39.758	ENSCANG00000028364	NFX1	74	39.808	Colobus_angolensis_palliatus
FBgn0001978	stc	69	38.825	ENSCGRG00001002869	Nfx1	70	38.938	Cricetulus_griseus_chok1gshd
FBgn0001978	stc	69	42.018	ENSCGRG00000016032	Nfx1	71	42.099	Cricetulus_griseus_crigri
FBgn0001978	stc	66	43.364	ENSCSEG00000019832	si:dkey-10f23.2	75	43.364	Cynoglossus_semilaevis
FBgn0001978	stc	87	38.086	ENSCVAG00000010039	si:dkey-10f23.2	80	42.093	Cyprinodon_variegatus
FBgn0001978	stc	68	43.350	ENSDARG00000105669	NFX1	75	41.816	Danio_rerio
FBgn0001978	stc	76	39.205	ENSDNOG00000002079	NFX1	78	39.205	Dasypus_novemcinctus
FBgn0001978	stc	65	41.417	ENSDORG00000001989	Nfx1	65	41.454	Dipodomys_ordii
FBgn0001978	stc	66	45.455	ENSETEG00000001427	NFX1	61	45.455	Echinops_telfairi
FBgn0001978	stc	65	43.793	ENSEBUG00000006923	si:dkey-10f23.2	58	43.793	Eptatretus_burgeri
FBgn0001978	stc	66	44.173	ENSEASG00005004230	NFX1	61	44.280	Equus_asinus_asinus
FBgn0001978	stc	66	44.173	ENSECAG00000021305	NFX1	62	44.260	Equus_caballus
FBgn0001978	stc	67	41.091	ENSEEUG00000001694	NFX1	64	38.889	Erinaceus_europaeus
FBgn0001978	stc	67	40.873	ENSELUG00000007422	si:dkey-10f23.2	67	40.873	Esox_lucius
FBgn0001978	stc	73	41.446	ENSFCAG00000007905	NFX1	74	41.446	Felis_catus
FBgn0001978	stc	66	43.203	ENSFALG00000013143	NFX1	66	43.203	Ficedula_albicollis
FBgn0001978	stc	69	42.967	ENSFDAG00000012320	NFX1	71	42.984	Fukomys_damarensis
FBgn0001978	stc	66	44.667	ENSFHEG00000017330	si:dkey-10f23.2	69	44.667	Fundulus_heteroclitus
FBgn0001978	stc	65	43.673	ENSGMOG00000006198	si:dkey-10f23.2	99	43.673	Gadus_morhua
FBgn0001978	stc	66	43.203	ENSGALG00000043724	NFX1	65	43.203	Gallus_gallus
FBgn0001978	stc	66	44.133	ENSGAFG00000000226	si:dkey-10f23.2	71	44.133	Gambusia_affinis
FBgn0001978	stc	67	43.692	ENSGACG00000004560	si:dkey-10f23.2	99	43.692	Gasterosteus_aculeatus
FBgn0001978	stc	65	44.278	ENSGGOG00000006751	NFX1	66	44.280	Gorilla_gorilla
FBgn0001978	stc	66	44.326	ENSHBUG00000015403	si:dkey-10f23.2	70	44.326	Haplochromis_burtoni
FBgn0001978	stc	69	42.839	ENSHGLG00000008375	NFX1	71	42.857	Heterocephalus_glaber_female
FBgn0001978	stc	69	42.839	ENSHGLG00100016433	NFX1	71	42.857	Heterocephalus_glaber_male
FBgn0001978	stc	66	44.161	ENSHCOG00000001235	si:dkey-10f23.2	73	44.161	Hippocampus_comes
FBgn0001978	stc	76	40.984	ENSIPUG00000005961	si:dkey-10f23.2	77	41.667	Ictalurus_punctatus
FBgn0001978	stc	66	44.173	ENSSTOG00000006984	NFX1	66	44.280	Ictidomys_tridecemlineatus
FBgn0001978	stc	66	44.459	ENSJJAG00000023303	Nfx1	68	43.817	Jaculus_jaculus
FBgn0001978	stc	66	43.391	ENSKMAG00000016306	si:dkey-10f23.2	69	43.391	Kryptolebias_marmoratus
FBgn0001978	stc	68	41.321	ENSLBEG00000013253	si:dkey-10f23.2	70	41.321	Labrus_bergylta
FBgn0001978	stc	66	44.265	ENSLACG00000000769	NFX1	72	44.220	Latimeria_chalumnae
FBgn0001978	stc	66	44.341	ENSLOCG00000011211	si:dkey-10f23.2	86	44.341	Lepisosteus_oculatus
FBgn0001978	stc	72	41.606	ENSMFAG00000038715	NFX1	74	41.637	Macaca_fascicularis
FBgn0001978	stc	72	41.727	ENSMMUG00000043096	NFX1	74	41.757	Macaca_mulatta
FBgn0001978	stc	72	41.727	ENSMNEG00000036057	NFX1	74	41.757	Macaca_nemestrina
FBgn0001978	stc	72	41.727	ENSMLEG00000040882	NFX1	74	41.757	Mandrillus_leucophaeus
FBgn0001978	stc	66	44.000	ENSMAMG00000010139	si:dkey-10f23.2	69	44.000	Mastacembelus_armatus
FBgn0001978	stc	66	44.059	ENSMZEG00005018390	si:dkey-10f23.2	70	44.059	Maylandia_zebra
FBgn0001978	stc	65	42.507	ENSMICG00000012124	NFX1	66	42.530	Microcebus_murinus
FBgn0001978	stc	66	43.876	ENSMOCG00000007616	Nfx1	67	43.876	Microtus_ochrogaster
FBgn0001978	stc	76	40.231	ENSMMOG00000004171	si:dkey-10f23.2	95	40.440	Mola_mola
FBgn0001978	stc	66	43.280	ENSMODG00000003990	NFX1	73	41.091	Monodelphis_domestica
FBgn0001978	stc	79	40.223	ENSMALG00000017326	si:dkey-10f23.2	88	41.807	Monopterus_albus
FBgn0001978	stc	69	42.018	MGP_CAROLIEiJ_G0025904	Nfx1	71	42.099	Mus_caroli
FBgn0001978	stc	69	42.018	ENSMUSG00000028423	Nfx1	71	42.099	Mus_musculus
FBgn0001978	stc	73	41.312	MGP_PahariEiJ_G0024027	Nfx1	74	41.396	Mus_pahari
FBgn0001978	stc	69	42.401	MGP_SPRETEiJ_G0026852	Nfx1	71	42.478	Mus_spretus
FBgn0001978	stc	65	43.597	ENSMPUG00000004111	NFX1	66	43.607	Mustela_putorius_furo
FBgn0001978	stc	66	43.683	ENSMLUG00000011069	NFX1	67	43.792	Myotis_lucifugus
FBgn0001978	stc	69	42.347	ENSNGAG00000005385	Nfx1	71	42.371	Nannospalax_galili
FBgn0001978	stc	66	44.133	ENSNBRG00000013449	si:dkey-10f23.2	70	44.133	Neolamprologus_brichardi
FBgn0001978	stc	73	41.516	ENSNLEG00000005096	NFX1	74	41.516	Nomascus_leucogenys
FBgn0001978	stc	66	42.361	ENSMEUG00000012002	NFX1	60	42.361	Notamacropus_eugenii
FBgn0001978	stc	68	41.131	ENSOPRG00000009816	NFX1	74	41.131	Ochotona_princeps
FBgn0001978	stc	66	44.444	ENSODEG00000015229	NFX1	66	44.549	Octodon_degus
FBgn0001978	stc	66	44.326	ENSONIG00000006192	si:dkey-10f23.2	69	44.326	Oreochromis_niloticus
FBgn0001978	stc	74	38.147	ENSOANG00000002524	NFX1	76	38.095	Ornithorhynchus_anatinus
FBgn0001978	stc	70	36.273	ENSOCUG00000008957	NFX1	69	39.444	Oryctolagus_cuniculus
FBgn0001978	stc	80	40.284	ENSORLG00000026662	si:dkey-10f23.2	87	41.190	Oryzias_latipes
FBgn0001978	stc	80	40.066	ENSORLG00020000170	si:dkey-10f23.2	87	40.961	Oryzias_latipes_hni
FBgn0001978	stc	80	40.132	ENSORLG00015008191	si:dkey-10f23.2	82	40.618	Oryzias_latipes_hsok
FBgn0001978	stc	78	39.530	ENSOMEG00000001814	si:dkey-10f23.2	77	42.588	Oryzias_melastigma
FBgn0001978	stc	65	42.507	ENSOGAG00000000775	NFX1	66	42.530	Otolemur_garnettii
FBgn0001978	stc	73	41.587	ENSOARG00000009478	NFX1	74	41.587	Ovis_aries
FBgn0001978	stc	72	41.363	ENSPPAG00000027871	NFX1	74	41.396	Pan_paniscus
FBgn0001978	stc	72	41.413	ENSPPRG00000000665	NFX1	74	41.446	Panthera_pardus
FBgn0001978	stc	72	41.413	ENSPTIG00000012443	NFX1	75	41.291	Panthera_tigris_altaica
FBgn0001978	stc	72	41.363	ENSPTRG00000020858	NFX1	74	41.396	Pan_troglodytes
FBgn0001978	stc	72	41.606	ENSPANG00000025304	NFX1	74	41.637	Papio_anubis
FBgn0001978	stc	69	41.451	ENSPKIG00000016899	si:dkey-10f23.2	71	41.451	Paramormyrops_kingsleyae
FBgn0001978	stc	67	43.906	ENSPSIG00000008420	NFX1	67	43.906	Pelodiscus_sinensis
FBgn0001978	stc	70	42.390	ENSPEMG00000007625	Nfx1	72	42.466	Peromyscus_maniculatus_bairdii
FBgn0001978	stc	65	42.091	ENSPMAG00000003556	si:dkey-10f23.2	94	41.733	Petromyzon_marinus
FBgn0001978	stc	66	44.267	ENSPFOG00000012547	si:dkey-10f23.2	70	44.267	Poecilia_formosa
FBgn0001978	stc	66	44.400	ENSPLAG00000010574	si:dkey-10f23.2	70	44.400	Poecilia_latipinna
FBgn0001978	stc	66	44.133	ENSPMEG00000015322	si:dkey-10f23.2	70	44.133	Poecilia_mexicana
FBgn0001978	stc	66	44.667	ENSPREG00000006186	si:dkey-10f23.2	70	44.667	Poecilia_reticulata
FBgn0001978	stc	59	44.140	ENSPPYG00000019136	-	95	44.144	Pongo_abelii
FBgn0001978	stc	61	36.966	ENSPCAG00000006913	NFX1	62	37.064	Procavia_capensis
FBgn0001978	stc	65	43.733	ENSPCOG00000015789	NFX1	66	43.742	Propithecus_coquereli
FBgn0001978	stc	61	42.144	ENSPVAG00000011479	NFX1	62	42.174	Pteropus_vampyrus
FBgn0001978	stc	66	44.192	ENSPNYG00000002175	si:dkey-10f23.2	70	44.192	Pundamilia_nyererei
FBgn0001978	stc	66	45.296	ENSPNAG00000016667	si:dkey-10f23.2	67	45.296	Pygocentrus_nattereri
FBgn0001978	stc	65	43.810	ENSRNOG00000009015	Nfx1	67	43.876	Rattus_norvegicus
FBgn0001978	stc	72	30.972	ENSRBIG00000036482	NFX1	72	34.296	Rhinopithecus_bieti
FBgn0001978	stc	72	41.484	ENSRROG00000026461	NFX1	80	41.516	Rhinopithecus_roxellana
FBgn0001978	stc	72	36.630	ENSSBOG00000035261	NFX1	72	36.594	Saimiri_boliviensis_boliviensis
FBgn0001978	stc	74	40.453	ENSSHAG00000010272	NFX1	74	40.309	Sarcophilus_harrisii
FBgn0001978	stc	66	43.666	ENSSFOG00015019271	si:dkey-10f23.2	68	43.666	Scleropages_formosus
FBgn0001978	stc	79	38.951	ENSSMAG00000015963	si:dkey-10f23.2	72	43.307	Scophthalmus_maximus
FBgn0001978	stc	80	39.011	ENSSDUG00000009395	si:dkey-10f23.2	92	37.051	Seriola_dumerili
FBgn0001978	stc	80	39.030	ENSSLDG00000023817	si:dkey-10f23.2	68	43.733	Seriola_lalandi_dorsalis
FBgn0001978	stc	63	43.612	ENSSARG00000014320	NFX1	58	43.612	Sorex_araneus
FBgn0001978	stc	79	39.821	ENSSPAG00000012861	si:dkey-10f23.2	69	44.133	Stegastes_partitus
FBgn0001978	stc	72	38.929	ENSSSCG00000010994	NFX1	73	38.989	Sus_scrofa
FBgn0001978	stc	66	38.596	ENSTGUG00000007055	NFX1	94	38.596	Taeniopygia_guttata
FBgn0001978	stc	65	41.866	ENSTBEG00000004560	NFX1	58	41.866	Tupaia_belangeri
FBgn0001978	stc	65	50.735	ENSTTRG00000010576	NFX1	53	50.735	Tursiops_truncatus
FBgn0001978	stc	65	43.869	ENSUMAG00000006016	NFX1	67	43.597	Ursus_maritimus
FBgn0001978	stc	65	44.218	ENSVVUG00000021100	NFX1	66	44.220	Vulpes_vulpes
FBgn0001978	stc	70	41.646	ENSXETG00000014997	nfx1	69	41.646	Xenopus_tropicalis
FBgn0001978	stc	66	43.792	ENSXMAG00000001963	si:dkey-10f23.2	70	43.792	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	8524296.	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	8524296.	IDA	Component
GO:0008270	zinc ion binding	-	IEA	Function
GO:0008270	zinc ion binding	21912646.	ISM	Function