EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0002044 (Gene tree)
Gene ID: 35235
Gene Symbol: swm
Alias: -
Full Name: second mitotic wave missing
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4728 bases
Position: chr2L:19493251-19497978
Accession: FBgn0002044
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0080785	Nup35_RRM_2	PF14605.6	2.8e-18	1	1
FBpp0080786	Nup35_RRM_2	PF14605.6	2.8e-18	1	1
FBpp0303743	Nup35_RRM_2	PF14605.6	2.9e-18	1	1
FBpp0303744	Nup35_RRM_2	PF14605.6	2.9e-18	1	1
FBpp0080785	PWI	PF01480.17	1.6e-07	1	1
FBpp0080786	PWI	PF01480.17	1.6e-07	1	1
FBpp0303743	PWI	PF01480.17	1.6e-07	1	1
FBpp0303744	PWI	PF01480.17	1.6e-07	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0331325	-	4151	-	FBpp0303743	1063 (aa)	-	M9PDF2
FBtr0081244	-	4005	-	FBpp0080785	1062 (aa)	-	Q9VIV2
FBtr0081245	-	4114	-	FBpp0080786	1062 (aa)	-	Q9VIV2
FBtr0331326	-	3974	-	FBpp0303744	1063 (aa)	-	M9PDF2

Gene Model

Click here to download FBgn0002044's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0002044's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0002044	swm	52	62.857	ENSG00000139746	RBM26	56	61.905	Homo_sapiens
FBgn0002044	swm	59	55.128	ENSG00000091009	RBM27	51	53.750	Homo_sapiens
FBgn0002044	swm	53	60.714	ENSAPOG00000014508	rbm26	53	60.714	Acanthochromis_polyacanthus
FBgn0002044	swm	54	56.627	ENSAPOG00000000301	rbm27	56	58.824	Acanthochromis_polyacanthus
FBgn0002044	swm	59	55.128	ENSAMEG00000017593	-	58	55.128	Ailuropoda_melanoleuca
FBgn0002044	swm	53	56.627	ENSACIG00000014111	rbm27	53	56.627	Amphilophus_citrinellus
FBgn0002044	swm	53	56.627	ENSAOCG00000016767	rbm27	53	58.824	Amphiprion_ocellaris
FBgn0002044	swm	53	60.714	ENSAOCG00000009289	rbm26	55	60.714	Amphiprion_ocellaris
FBgn0002044	swm	53	60.714	ENSAPEG00000023027	rbm26	56	60.714	Amphiprion_percula
FBgn0002044	swm	53	56.627	ENSAPEG00000017681	rbm27	56	58.824	Amphiprion_percula
FBgn0002044	swm	54	56.627	ENSATEG00000010385	rbm27	53	56.627	Anabas_testudineus
FBgn0002044	swm	52	64.706	ENSATEG00000014718	rbm26	56	64.103	Anabas_testudineus
FBgn0002044	swm	55	46.914	ENSAPLG00000009309	-	52	46.914	Anas_platyrhynchos
FBgn0002044	swm	55	55.814	ENSACAG00000014177	-	53	50.000	Anolis_carolinensis
FBgn0002044	swm	52	55.128	ENSANAG00000034039	-	56	55.932	Aotus_nancymaae
FBgn0002044	swm	52	62.821	ENSACLG00000022597	rbm26	74	62.821	Astatotilapia_calliptera
FBgn0002044	swm	53	56.627	ENSACLG00000010782	rbm27	55	56.627	Astatotilapia_calliptera
FBgn0002044	swm	54	57.576	ENSAMXG00000029605	rbm27	52	57.576	Astyanax_mexicanus
FBgn0002044	swm	52	62.857	ENSCJAG00000021261	RBM26	56	61.905	Callithrix_jacchus
FBgn0002044	swm	59	55.128	ENSCJAG00000021308	-	66	55.128	Callithrix_jacchus
FBgn0002044	swm	54	55.128	ENSCAFG00000006456	-	51	55.128	Canis_familiaris
FBgn0002044	swm	52	62.857	ENSCAFG00020024152	RBM26	56	61.905	Canis_lupus_dingo
FBgn0002044	swm	52	62.857	ENSTSYG00000000856	RBM26	54	61.905	Carlito_syrichta
FBgn0002044	swm	59	55.128	ENSTSYG00000004303	-	62	55.128	Carlito_syrichta
FBgn0002044	swm	57	56.897	ENSCCAG00000015866	-	56	56.897	Cebus_capucinus
FBgn0002044	swm	52	62.857	ENSCCAG00000025299	RBM26	57	61.905	Cebus_capucinus
FBgn0002044	swm	59	55.128	ENSCATG00000035545	-	56	56.897	Cercocebus_atys
FBgn0002044	swm	52	56.757	ENSCLAG00000016106	-	61	55.128	Chinchilla_lanigera
FBgn0002044	swm	59	55.128	ENSCSAG00000012270	-	51	55.128	Chlorocebus_sabaeus
FBgn0002044	swm	51	60.714	ENSCPBG00000026731	RBM26	53	60.714	Chrysemys_picta_bellii
FBgn0002044	swm	55	57.692	ENSCPBG00000008390	-	59	57.692	Chrysemys_picta_bellii
FBgn0002044	swm	66	53.947	ENSCING00000003516	zf(c3h)-9	53	53.947	Ciona_intestinalis
FBgn0002044	swm	52	62.857	ENSCANG00000035909	RBM26	56	61.905	Colobus_angolensis_palliatus
FBgn0002044	swm	59	55.128	ENSCANG00000040932	-	60	55.128	Colobus_angolensis_palliatus
FBgn0002044	swm	59	55.128	ENSCGRG00001018200	Rbm27	75	55.128	Cricetulus_griseus_chok1gshd
FBgn0002044	swm	53	62.857	ENSCGRG00001018743	Rbm26	56	56.566	Cricetulus_griseus_chok1gshd
FBgn0002044	swm	57	56.897	ENSCGRG00000006403	Rbm27	60	56.897	Cricetulus_griseus_crigri
FBgn0002044	swm	51	62.857	ENSCGRG00000006579	Rbm26	87	31.088	Cricetulus_griseus_crigri
FBgn0002044	swm	56	57.831	ENSCSEG00000014910	rbm27	54	58.824	Cynoglossus_semilaevis
FBgn0002044	swm	52	64.103	ENSCSEG00000016514	rbm26	75	60.494	Cynoglossus_semilaevis
FBgn0002044	swm	53	55.422	ENSDARG00000060521	rbm27	52	56.098	Danio_rerio
FBgn0002044	swm	58	55.128	ENSDNOG00000019753	-	51	55.128	Dasypus_novemcinctus
FBgn0002044	swm	52	62.857	ENSDNOG00000004726	RBM26	56	55.000	Dasypus_novemcinctus
FBgn0002044	swm	52	62.857	ENSDORG00000006232	Rbm26	56	61.905	Dipodomys_ordii
FBgn0002044	swm	59	55.128	ENSDORG00000013392	Rbm27	57	55.128	Dipodomys_ordii
FBgn0002044	swm	53	50.000	ENSEASG00005020588	-	50	50.000	Equus_asinus_asinus
FBgn0002044	swm	53	55.128	ENSECAG00000000883	-	61	55.128	Equus_caballus
FBgn0002044	swm	53	52.564	ENSEEUG00000010335	-	51	52.564	Erinaceus_europaeus
FBgn0002044	swm	54	62.821	ENSELUG00000003110	rbm26	52	65.000	Esox_lucius
FBgn0002044	swm	54	55.128	ENSFCAG00000005792	-	61	55.128	Felis_catus
FBgn0002044	swm	64	54.545	ENSFALG00000003228	-	50	54.545	Ficedula_albicollis
FBgn0002044	swm	52	62.857	ENSFDAG00000011365	RBM26	56	61.905	Fukomys_damarensis
FBgn0002044	swm	59	55.128	ENSFDAG00000017029	-	58	55.128	Fukomys_damarensis
FBgn0002044	swm	52	57.576	ENSFHEG00000010494	rbm27	55	57.576	Fundulus_heteroclitus
FBgn0002044	swm	58	43.590	ENSGALG00000007516	-	55	43.590	Gallus_gallus
FBgn0002044	swm	51	62.857	ENSGALG00000016910	RBM26	53	62.857	Gallus_gallus
FBgn0002044	swm	52	54.545	ENSGAFG00000005005	rbm27	52	54.545	Gambusia_affinis
FBgn0002044	swm	54	61.905	ENSGACG00000015254	rbm26	75	61.905	Gasterosteus_aculeatus
FBgn0002044	swm	58	58.824	ENSGACG00000020719	rbm27	54	58.824	Gasterosteus_aculeatus
FBgn0002044	swm	53	62.857	ENSGAGG00000009442	RBM26	58	60.714	Gopherus_agassizii
FBgn0002044	swm	53	56.897	ENSGAGG00000002126	-	54	56.897	Gopherus_agassizii
FBgn0002044	swm	59	55.128	ENSGGOG00000013312	-	57	52.857	Gorilla_gorilla
FBgn0002044	swm	52	62.857	ENSGGOG00000005994	RBM26	57	61.905	Gorilla_gorilla
FBgn0002044	swm	53	56.627	ENSHBUG00000003077	rbm27	59	56.627	Haplochromis_burtoni
FBgn0002044	swm	52	64.103	ENSHBUG00000003761	rbm26	75	64.103	Haplochromis_burtoni
FBgn0002044	swm	52	62.857	ENSHGLG00000003995	RBM26	56	61.905	Heterocephalus_glaber_female
FBgn0002044	swm	52	55.128	ENSHGLG00000004076	RBM27	61	55.128	Heterocephalus_glaber_female
FBgn0002044	swm	52	62.857	ENSHGLG00100000439	-	56	61.905	Heterocephalus_glaber_male
FBgn0002044	swm	50	56.897	ENSHGLG00100003022	-	60	56.897	Heterocephalus_glaber_male
FBgn0002044	swm	55	58.824	ENSHCOG00000003684	rbm27	58	58.824	Hippocampus_comes
FBgn0002044	swm	54	62.821	ENSHCOG00000000066	rbm26	56	62.821	Hippocampus_comes
FBgn0002044	swm	54	56.410	ENSIPUG00000004579	rbm26	56	56.410	Ictalurus_punctatus
FBgn0002044	swm	54	58.025	ENSIPUG00000012280	rbm27	67	58.025	Ictalurus_punctatus
FBgn0002044	swm	52	55.128	ENSSTOG00000002378	-	61	55.128	Ictidomys_tridecemlineatus
FBgn0002044	swm	52	62.857	ENSSTOG00000016031	RBM26	95	30.144	Ictidomys_tridecemlineatus
FBgn0002044	swm	54	62.857	ENSJJAG00000022458	Rbm26	59	55.000	Jaculus_jaculus
FBgn0002044	swm	57	58.730	ENSJJAG00000010911	Rbm27	56	58.730	Jaculus_jaculus
FBgn0002044	swm	52	58.824	ENSKMAG00000009801	rbm27	52	58.824	Kryptolebias_marmoratus
FBgn0002044	swm	53	57.500	ENSKMAG00000021802	rbm26	77	56.818	Kryptolebias_marmoratus
FBgn0002044	swm	53	55.422	ENSLBEG00000025151	rbm27	67	58.824	Labrus_bergylta
FBgn0002044	swm	52	62.857	ENSLACG00000017450	RBM26	56	55.000	Latimeria_chalumnae
FBgn0002044	swm	52	54.430	ENSLACG00000008729	rbm27	52	54.430	Latimeria_chalumnae
FBgn0002044	swm	54	58.974	ENSLOCG00000010426	rbm27	54	54.545	Lepisosteus_oculatus
FBgn0002044	swm	52	64.706	ENSLOCG00000004557	rbm26	53	64.706	Lepisosteus_oculatus
FBgn0002044	swm	51	62.857	ENSLAFG00000010689	RBM26	54	57.534	Loxodonta_africana
FBgn0002044	swm	59	55.128	ENSLAFG00000022447	-	58	55.128	Loxodonta_africana
FBgn0002044	swm	52	62.857	ENSMFAG00000044633	RBM26	56	61.905	Macaca_fascicularis
FBgn0002044	swm	59	55.128	ENSMFAG00000042337	-	54	55.128	Macaca_fascicularis
FBgn0002044	swm	59	55.128	ENSMMUG00000004476	RBM27	57	55.128	Macaca_mulatta
FBgn0002044	swm	52	62.857	ENSMMUG00000007529	RBM26	91	30.000	Macaca_mulatta
FBgn0002044	swm	51	45.000	ENSMNEG00000037798	-	50	45.000	Macaca_nemestrina
FBgn0002044	swm	52	62.857	ENSMLEG00000041714	RBM26	55	61.905	Mandrillus_leucophaeus
FBgn0002044	swm	59	55.128	ENSMLEG00000032857	-	51	55.128	Mandrillus_leucophaeus
FBgn0002044	swm	66	56.627	ENSMAMG00000021382	rbm27	67	58.824	Mastacembelus_armatus
FBgn0002044	swm	52	62.821	ENSMZEG00005004751	rbm26	74	62.821	Maylandia_zebra
FBgn0002044	swm	53	56.627	ENSMZEG00005002635	rbm27	59	56.627	Maylandia_zebra
FBgn0002044	swm	53	55.738	ENSMGAG00000009467	-	50	55.738	Meleagris_gallopavo
FBgn0002044	swm	59	55.128	ENSMAUG00000007657	Rbm27	65	55.128	Mesocricetus_auratus
FBgn0002044	swm	54	62.857	ENSMAUG00000017566	Rbm26	95	30.144	Mesocricetus_auratus
FBgn0002044	swm	52	55.128	ENSMICG00000003262	-	58	55.128	Microcebus_murinus
FBgn0002044	swm	52	58.824	ENSMALG00000018514	rbm27	55	58.824	Monopterus_albus
FBgn0002044	swm	53	62.338	ENSMALG00000015030	rbm26	55	60.714	Monopterus_albus
FBgn0002044	swm	58	55.128	MGP_CAROLIEiJ_G0022226	Rbm27	60	55.128	Mus_caroli
FBgn0002044	swm	53	62.857	MGP_CAROLIEiJ_G0019580	Rbm26	56	56.566	Mus_caroli
FBgn0002044	swm	58	55.128	ENSMUSG00000024491	Rbm27	60	55.128	Mus_musculus
FBgn0002044	swm	53	62.857	ENSMUSG00000022119	Rbm26	55	62.857	Mus_musculus
FBgn0002044	swm	54	62.857	MGP_PahariEiJ_G0030597	Rbm26	90	30.808	Mus_pahari
FBgn0002044	swm	59	55.128	MGP_PahariEiJ_G0018959	Rbm27	61	55.128	Mus_pahari
FBgn0002044	swm	58	55.128	MGP_SPRETEiJ_G0023136	Rbm27	60	55.128	Mus_spretus
FBgn0002044	swm	52	62.857	MGP_SPRETEiJ_G0020476	Rbm26	55	61.905	Mus_spretus
FBgn0002044	swm	54	55.128	ENSMPUG00000007832	-	58	55.128	Mustela_putorius_furo
FBgn0002044	swm	53	55.128	ENSMLUG00000000643	-	57	55.128	Myotis_lucifugus
FBgn0002044	swm	52	62.857	ENSMLUG00000003386	RBM26	53	55.263	Myotis_lucifugus
FBgn0002044	swm	52	55.128	ENSNGAG00000016316	Rbm27	61	55.128	Nannospalax_galili
FBgn0002044	swm	59	56.627	ENSNBRG00000005739	rbm27	53	56.627	Neolamprologus_brichardi
FBgn0002044	swm	57	56.897	ENSNLEG00000009886	-	56	56.897	Nomascus_leucogenys
FBgn0002044	swm	50	56.897	ENSOPRG00000005424	-	56	56.897	Ochotona_princeps
FBgn0002044	swm	52	62.857	ENSODEG00000004663	RBM26	56	61.905	Octodon_degus
FBgn0002044	swm	50	55.128	ENSODEG00000005515	-	57	55.128	Octodon_degus
FBgn0002044	swm	52	62.821	ENSONIG00000003242	rbm26	54	62.821	Oreochromis_niloticus
FBgn0002044	swm	54	56.627	ENSONIG00000008506	rbm27	55	56.627	Oreochromis_niloticus
FBgn0002044	swm	52	55.128	ENSOCUG00000000186	-	58	55.128	Oryctolagus_cuniculus
FBgn0002044	swm	54	57.692	ENSORLG00000001645	rbm27	57	55.882	Oryzias_latipes
FBgn0002044	swm	54	57.692	ENSORLG00020019863	rbm27	56	55.882	Oryzias_latipes_hni
FBgn0002044	swm	54	57.692	ENSORLG00015003753	rbm27	57	55.882	Oryzias_latipes_hsok
FBgn0002044	swm	53	55.128	ENSOMEG00000005785	rbm27	52	55.882	Oryzias_melastigma
FBgn0002044	swm	59	55.128	ENSOGAG00000008758	-	58	55.128	Otolemur_garnettii
FBgn0002044	swm	52	62.857	ENSPPAG00000027293	RBM26	57	61.905	Pan_paniscus
FBgn0002044	swm	59	55.128	ENSPPAG00000039646	-	57	52.857	Pan_paniscus
FBgn0002044	swm	60	55.128	ENSPPRG00000021227	-	58	55.128	Panthera_pardus
FBgn0002044	swm	52	62.857	ENSPPRG00000023669	RBM26	56	61.905	Panthera_pardus
FBgn0002044	swm	60	55.128	ENSPTIG00000013051	-	58	55.128	Panthera_tigris_altaica
FBgn0002044	swm	52	62.857	ENSPTRG00000005949	RBM26	57	61.905	Pan_troglodytes
FBgn0002044	swm	59	55.128	ENSPTRG00000017373	-	57	52.857	Pan_troglodytes
FBgn0002044	swm	57	56.897	ENSPANG00000015776	-	56	56.897	Papio_anubis
FBgn0002044	swm	52	62.857	ENSPANG00000012979	RBM26	55	61.905	Papio_anubis
FBgn0002044	swm	51	53.846	ENSPKIG00000024548	-	50	53.846	Paramormyrops_kingsleyae
FBgn0002044	swm	55	57.692	ENSPSIG00000016084	-	55	57.692	Pelodiscus_sinensis
FBgn0002044	swm	50	58.824	ENSPMGG00000019541	rbm27	55	55.556	Periophthalmus_magnuspinnatus
FBgn0002044	swm	59	55.128	ENSPEMG00000014312	Rbm27	65	55.128	Peromyscus_maniculatus_bairdii
FBgn0002044	swm	54	62.857	ENSPEMG00000019529	Rbm26	95	31.100	Peromyscus_maniculatus_bairdii
FBgn0002044	swm	53	54.545	ENSPFOG00000003105	rbm27	57	54.545	Poecilia_formosa
FBgn0002044	swm	54	54.545	ENSPLAG00000000373	rbm27	56	54.545	Poecilia_latipinna
FBgn0002044	swm	54	54.545	ENSPMEG00000018569	rbm27	61	54.545	Poecilia_mexicana
FBgn0002044	swm	52	58.974	ENSPREG00000021003	rbm26	58	58.974	Poecilia_reticulata
FBgn0002044	swm	59	55.128	ENSPPYG00000015909	-	51	53.750	Pongo_abelii
FBgn0002044	swm	52	62.857	ENSPCOG00000017206	RBM26	57	61.905	Propithecus_coquereli
FBgn0002044	swm	59	55.128	ENSPVAG00000005218	-	50	55.128	Pteropus_vampyrus
FBgn0002044	swm	53	56.627	ENSPNYG00000015348	rbm27	55	56.627	Pundamilia_nyererei
FBgn0002044	swm	52	62.821	ENSPNYG00000001371	rbm26	74	62.821	Pundamilia_nyererei
FBgn0002044	swm	50	56.566	ENSRNOG00000009836	Rbm26	52	56.566	Rattus_norvegicus
FBgn0002044	swm	59	55.128	ENSRNOG00000027250	Rbm27	62	55.128	Rattus_norvegicus
FBgn0002044	swm	52	62.857	ENSRROG00000045798	RBM26	56	61.905	Rhinopithecus_roxellana
FBgn0002044	swm	59	55.128	ENSRROG00000043836	-	57	52.778	Rhinopithecus_roxellana
FBgn0002044	swm	57	56.897	ENSSBOG00000034172	-	56	56.897	Saimiri_boliviensis_boliviensis
FBgn0002044	swm	66	61.538	ENSSFOG00015003102	RBM26	55	61.538	Scleropages_formosus
FBgn0002044	swm	52	64.706	ENSSFOG00015005311	rbm26	52	64.706	Scleropages_formosus
FBgn0002044	swm	68	56.627	ENSSMAG00000004138	rbm27	52	56.627	Scophthalmus_maximus
FBgn0002044	swm	53	57.831	ENSSDUG00000021085	rbm27	56	58.824	Seriola_dumerili
FBgn0002044	swm	53	57.831	ENSSLDG00000006922	rbm27	53	58.824	Seriola_lalandi_dorsalis
FBgn0002044	swm	51	51.724	ENSSARG00000000313	-	51	30.075	Sorex_araneus
FBgn0002044	swm	54	51.948	ENSSPUG00000013753	-	50	51.948	Sphenodon_punctatus
FBgn0002044	swm	52	58.824	ENSSPAG00000012000	rbm27	52	58.824	Stegastes_partitus
FBgn0002044	swm	55	55.128	ENSSSCG00000014414	-	52	55.128	Sus_scrofa
FBgn0002044	swm	53	56.897	ENSTGUG00000000085	-	54	56.897	Taeniopygia_guttata
FBgn0002044	swm	52	58.824	ENSTRUG00000004518	rbm27	54	58.824	Takifugu_rubripes
FBgn0002044	swm	51	53.750	ENSTNIG00000018215	rbm27	51	53.750	Tetraodon_nigroviridis
FBgn0002044	swm	53	45.000	ENSUMAG00000010569	-	50	31.293	Ursus_maritimus
FBgn0002044	swm	52	62.857	ENSUMAG00000013370	RBM26	53	61.905	Ursus_maritimus
FBgn0002044	swm	54	55.128	ENSVVUG00000021131	-	58	55.128	Vulpes_vulpes
FBgn0002044	swm	52	58.974	ENSXCOG00000001827	rbm26	58	58.974	Xiphophorus_couchianus
FBgn0002044	swm	52	54.545	ENSXMAG00000001413	rbm27	52	54.545	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003729	mRNA binding	21203496.	IDA	Function
GO:0005515	protein binding	19364924.	IPI	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	18245841.	IDA	Component
GO:0010628	positive regulation of gene expression	21203496.	IMP	Process
GO:0046833	positive regulation of RNA export from nucleus	21873635.	IBA	Process
GO:0046833	positive regulation of RNA export from nucleus	21203496.	IMP	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:1900364	negative regulation of mRNA polyadenylation	21203496.	IMP	Process