EuRBPDB

Description

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0002183 (Gene tree)
Gene ID: 38248
Gene Symbol: dre4
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: putative
Strand: Minus strand
Length: 4739
Position: chr3L: 1871574-1876312
Accession
RBP type: non-canonical RBP
Summary: -

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0072864	-	3690	-	FBpp0072743	1122 (aa)	-	Q1WWE1
FBtr0072865	-	3573	-	FBpp0072744	1083 (aa)	-	Q8IRG6

Gene Model

Click here to download FBgn0002183's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0002183's network

Orthologs identified by RBPome

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0002183	dre4	93	60.555	ENSG00000092201	SUPT16H	96	60.255	Homo_sapiens
FBgn0002183	dre4	93	60.753	ENSMUSG00000035726	Supt16	96	60.750	Mus_musculus
FBgn0002183	dre4	93	33.833	YGL207W	SPT16	99	33.365	Saccharomyces_cerevisiae

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001672	regulation of chromatin assembly or disassembly	12815073.	IMP	Process
GO:0003682	chromatin binding	17174895.	IDA	Function
GO:0005634	nucleus	17174895.	IDA	Component
GO:0005703	polytene chromosome puff	12934007.	IDA	Component
GO:0005730	nucleolus	12934007.	IDA	Component
GO:0006368	transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0031491	nucleosome binding	21873635.	IBA	Function
GO:0031491	nucleosome binding	12815073.	IDA	Function
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	21873635.	IBA	Process
GO:0032968	positive regulation of transcription elongation from RNA polymerase II promoter	17174895.	IMP	Process
GO:0034724	DNA replication-independent nucleosome organization	21873635.	IBA	Process
GO:0035101	FACT complex	21873635.	IBA	Component
GO:0035101	FACT complex	19605348.	IDA	Component
GO:0035101	FACT complex	14698615.	TAS	Component
GO:0042393	histone binding	21873635.	IBA	Function