EuRBPDB

Description

RBDs

RBPome

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: FBgn0002542 (Gene tree)
Gene ID: 45894
Gene Symbol: lds
Alias: -
Full Name: lodestar
Gene Type: protein_coding
Species: Drosophila_melanogaster
Status: confidence
Strand: Plus strand
Length: 4061 bases
Position: chr3R:7920431-7924491
Accession: FBgn0002542
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
FBpp0081255	ResIII	PF04851.15	2.3e-06	1	1

RNA binding proteome (RBPome)

PID	Title	Method	Time	Author	Doi
27378189	Global changes of the RNA bound proteome during the maternal-to-zygotic transition in Drosophila	IC & embryos.MZT	2016 Jul 5	Sysoev VO	DOI: 10.1038/ncomms12128
27197210	The mRNA-bound proteome of the early fly embryo	IC & embryos	2016 Apr 28	Wessels HH	DOI: 10.1101/gr.200386.115

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
FBtr0081758	-	3543	-	FBpp0081255	1061 (aa)	-	P34739

Gene Model

Click here to download FBgn0002542's gene model file

Protein-Protein Interaction (PPI)

Clik here to download FBgn0002542's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
FBgn0002542	lds	77	37.382	ENSG00000116830	TTF2	100	52.083	Homo_sapiens
FBgn0002542	lds	62	40.444	ENSAPLG00000010324	-	58	40.177	Anas_platyrhynchos
FBgn0002542	lds	70	39.437	ENSANAG00000020654	TTF2	63	39.309	Aotus_nancymaae
FBgn0002542	lds	70	39.618	ENSBTAG00000015392	TTF2	62	39.363	Bos_taurus
FBgn0002542	lds	70	38.812	ENSCHIG00000020785	TTF2	60	38.812	Capra_hircus
FBgn0002542	lds	70	39.309	ENSCCAG00000032675	TTF2	63	39.181	Cebus_capucinus
FBgn0002542	lds	70	36.146	ENSCSAVG00000002857	-	98	36.146	Ciona_savignyi
FBgn0002542	lds	77	37.676	ENSCANG00000032079	TTF2	68	37.793	Colobus_angolensis_palliatus
FBgn0002542	lds	70	37.323	ENSDORG00000013781	Ttf2	62	37.838	Dipodomys_ordii
FBgn0002542	lds	96	34.198	ENSECAG00000012474	TTF2	66	38.323	Equus_caballus
FBgn0002542	lds	61	41.703	ENSFCAG00000001981	TTF2	63	39.340	Felis_catus
FBgn0002542	lds	64	40.429	ENSGAFG00000004358	TTF2	58	40.714	Gambusia_affinis
FBgn0002542	lds	70	38.996	ENSGGOG00000015790	TTF2	63	39.125	Gorilla_gorilla
FBgn0002542	lds	70	39.444	ENSJJAG00000015225	Ttf2	64	39.317	Jaculus_jaculus
FBgn0002542	lds	70	37.661	ENSMNEG00000042285	TTF2	62	37.532	Macaca_nemestrina
FBgn0002542	lds	77	37.253	ENSMLEG00000041549	TTF2	68	37.441	Mandrillus_leucophaeus
FBgn0002542	lds	62	39.439	ENSMGAG00000014354	TTF2	54	39.439	Meleagris_gallopavo
FBgn0002542	lds	70	39.974	ENSMOCG00000008415	Ttf2	65	39.591	Microtus_ochrogaster
FBgn0002542	lds	70	38.292	ENSMODG00000005145	TTF2	62	37.935	Monodelphis_domestica
FBgn0002542	lds	70	37.900	ENSMALG00000017262	TTF2	68	38.540	Monopterus_albus
FBgn0002542	lds	70	38.867	MGP_CAROLIEiJ_G0025427	Ttf2	64	38.996	Mus_caroli
FBgn0002542	lds	70	38.265	ENSMUSG00000033222	Ttf2	64	38.265	Mus_musculus
FBgn0002542	lds	70	39.046	MGP_PahariEiJ_G0026871	Ttf2	63	39.304	Mus_pahari
FBgn0002542	lds	70	38.138	MGP_SPRETEiJ_G0026377	Ttf2	64	38.138	Mus_spretus
FBgn0002542	lds	70	38.628	ENSMLUG00000013908	TTF2	63	38.374	Myotis_lucifugus
FBgn0002542	lds	70	40.874	ENSNGAG00000018882	Ttf2	64	40.541	Nannospalax_galili
FBgn0002542	lds	58	40.160	ENSNBRG00000011914	TTF2	55	40.635	Neolamprologus_brichardi
FBgn0002542	lds	75	37.799	ENSNLEG00000005209	TTF2	66	37.919	Nomascus_leucogenys
FBgn0002542	lds	70	39.570	ENSOCUG00000000613	TTF2	63	39.490	Oryctolagus_cuniculus
FBgn0002542	lds	62	41.778	ENSOGAG00000009039	TTF2	54	41.630	Otolemur_garnettii
FBgn0002542	lds	70	38.755	ENSOARG00000020266	TTF2	62	38.755	Ovis_aries
FBgn0002542	lds	77	37.500	ENSPPAG00000027542	TTF2	68	37.382	Pan_paniscus
FBgn0002542	lds	77	37.500	ENSPTRG00000001162	TTF2	63	39.203	Pan_troglodytes
FBgn0002542	lds	63	42.363	ENSPSIG00000005266	TTF2	82	42.363	Pelodiscus_sinensis
FBgn0002542	lds	70	36.247	ENSPPYG00000000976	TTF2	62	36.118	Pongo_abelii
FBgn0002542	lds	70	39.363	ENSPCOG00000000551	TTF2	62	39.618	Propithecus_coquereli
FBgn0002542	lds	70	40.409	ENSPVAG00000014881	TTF2	63	40.409	Pteropus_vampyrus
FBgn0002542	lds	77	37.646	ENSRBIG00000042651	TTF2	68	37.762	Rhinopithecus_bieti
FBgn0002542	lds	77	37.603	ENSRROG00000013287	TTF2	67	37.720	Rhinopithecus_roxellana
FBgn0002542	lds	70	39.024	ENSSBOG00000022555	TTF2	63	39.024	Saimiri_boliviensis_boliviensis
FBgn0002542	lds	70	39.317	ENSSHAG00000018195	TTF2	65	39.191	Sarcophilus_harrisii
FBgn0002542	lds	65	40.084	ENSSMAG00000007532	TTF2	59	40.309	Scophthalmus_maximus
FBgn0002542	lds	62	41.959	ENSSDUG00000013617	TTF2	75	37.212	Seriola_dumerili
FBgn0002542	lds	70	38.393	ENSSARG00000007562	TTF2	63	38.393	Sorex_araneus
FBgn0002542	lds	70	38.825	ENSSSCG00000006733	TTF2	65	38.570	Sus_scrofa
FBgn0002542	lds	66	33.154	ENSTRUG00000015592	-	63	33.378	Takifugu_rubripes
FBgn0002542	lds	64	41.785	ENSTNIG00000015679	-	59	41.135	Tetraodon_nigroviridis
FBgn0002542	lds	70	36.768	ENSTTRG00000012884	TTF2	62	36.641	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	1916263.	IDA	Component
GO:0005737	cytoplasm	1916263.	IDA	Component
GO:0006353	DNA-templated transcription, termination	8626643.	IDA	Process
GO:0007143	female meiotic nuclear division	19047413.	IMP	Process
GO:0007283	spermatogenesis	19047413.	IMP	Process
GO:0008094	DNA-dependent ATPase activity	9452510.	IDA	Function
GO:0034454	microtubule anchoring at centrosome	19047413.	IMP	Process